Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:54:06 (3864005): wrapper (7.7.26015): starting
10:54:06 (3864005): wrapper: running run_atlas (--nthreads 3)
[2025-12-05 10:54:06] Arguments: --nthreads 3
[2025-12-05 10:54:06] Threads: 3
[2025-12-05 10:54:06] Checking for CVMFS
[2025-12-05 10:54:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-05 10:54:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-05 10:54:06] Running cvmfs_config stat atlas.cern.ch
[2025-12-05 10:54:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-05 10:54:07] 2.9.2.0 2507813 9732 91484 153646 2 81 18793740 36864000 0 130560 0 3654214 99.984 313788 664 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-05 10:54:07] CVMFS is ok
[2025-12-05 10:54:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-05 10:54:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-05 10:54:07] Further information can be found at the LHC@home message board.
[2025-12-05 10:54:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-05 10:54:07] Checking for apptainer binary...
[2025-12-05 10:54:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-05 10:54:07] Running /usr/bin/apptainer --version
[2025-12-05 10:54:07] apptainer version 1.4.1-1.1
[2025-12-05 10:54:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-05 10:54:07] magicA246a
[2025-12-05 10:54:07] apptainer works
[2025-12-05 10:54:07] Set ATHENA_PROC_NUMBER=3
[2025-12-05 10:54:07] Set ATHENA_CORE_NUMBER=3
[2025-12-05 10:54:07] Starting ATLAS job with PandaID=6895356905
[2025-12-05 10:54:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-05 18:45:56]  *** The last 200 lines of the pilot log: ***
[2025-12-05 18:45:56] 2025-12-05 17:45:24,926 | INFO     | 
[2025-12-05 18:45:56] 2025-12-05 17:45:24,926 | INFO     | architecture information:
[2025-12-05 18:45:56] 2025-12-05 17:45:24,926 | INFO     | executing command: cat /etc/os-release
[2025-12-05 18:45:56] 2025-12-05 17:45:24,935 | INFO     | cat /etc/os-release:
[2025-12-05 18:45:56] NAME="CentOS Linux"
[2025-12-05 18:45:56] VERSION="7 (Core)"
[2025-12-05 18:45:56] ID="centos"
[2025-12-05 18:45:56] ID_LIKE="rhel fedora"
[2025-12-05 18:45:56] VERSION_ID="7"
[2025-12-05 18:45:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-05 18:45:56] ANSI_COLOR="0;31"
[2025-12-05 18:45:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-05 18:45:56] HOME_URL="https://www.centos.org/"
[2025-12-05 18:45:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-05 18:45:56] 
[2025-12-05 18:45:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-05 18:45:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-05 18:45:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-05 18:45:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-05 18:45:56] 
[2025-12-05 18:45:56] 2025-12-05 17:45:24,935 | INFO     | ***************************************
[2025-12-05 18:45:56] 2025-12-05 17:45:25,439 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-05 18:45:56] 2025-12-05 17:45:25,452 | INFO     | sufficient remaining disk space (285997006848 B)
[2025-12-05 18:45:56] 2025-12-05 17:45:25,452 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-05 18:45:56] 2025-12-05 17:45:25,452 | INFO     | current server update state: UPDATING_FINAL
[2025-12-05 18:45:56] 2025-12-05 17:45:25,452 | INFO     | update_server=False
[2025-12-05 18:45:56] 2025-12-05 17:45:25,452 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-05 18:45:56] 2025-12-05 17:45:25,452 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-05 18:45:56] 2025-12-05 17:45:25,452 | INFO     | aborting loop
[2025-12-05 18:45:56] 2025-12-05 17:45:25,600 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-05 18:45:56] 2025-12-05 17:45:25,626 | INFO     | all data control threads have been joined
[2025-12-05 18:45:56] 2025-12-05 17:45:25,646 | INFO     | all job control threads have been joined
[2025-12-05 18:45:56] 2025-12-05 17:45:26,123 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-05 18:45:56] 2025-12-05 17:45:26,457 | INFO     | [job] retrieve thread has finished
[2025-12-05 18:45:56] 2025-12-05 17:45:26,458 | INFO     | [job] job monitor thread has finished
[2025-12-05 18:45:56] 2025-12-05 17:45:26,632 | INFO     | [data] control thread has finished
[2025-12-05 18:45:56] 2025-12-05 17:45:26,652 | INFO     | [job] control thread has finished
[2025-12-05 18:45:56] 2025-12-05 17:45:26,719 | INFO     | all payload control threads have been joined
[2025-12-05 18:45:56] 2025-12-05 17:45:26,785 | INFO     | [payload] validate_post thread has finished
[2025-12-05 18:45:56] 2025-12-05 17:45:26,948 | INFO     | [payload] failed_post thread has finished
[2025-12-05 18:45:56] 2025-12-05 17:45:27,598 | INFO     | [data] copytool_in thread has finished
[2025-12-05 18:45:56] 2025-12-05 17:45:27,605 | INFO     | [data] copytool_out thread has finished
[2025-12-05 18:45:56] 2025-12-05 17:45:27,724 | INFO     | [payload] control thread has finished
[2025-12-05 18:45:56] 2025-12-05 17:45:27,773 | INFO     | [payload] execute_payloads thread has finished
[2025-12-05 18:45:56] 2025-12-05 17:45:27,816 | INFO     | [payload] validate_pre thread has finished
[2025-12-05 18:45:56] 2025-12-05 17:45:27,817 | INFO     | [job] create_data_payload thread has finished
[2025-12-05 18:45:56] 2025-12-05 17:45:27,885 | INFO     | [job] validate thread has finished
[2025-12-05 18:45:56] 2025-12-05 17:45:28,454 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-05 18:45:56] 2025-12-05 17:45:29,459 | INFO     | [job] queue monitor thread has finished
[2025-12-05 18:45:56] 2025-12-05 17:45:30,130 | INFO     | [data] queue_monitor thread has finished
[2025-12-05 18:45:56] 2025-12-05 17:45:36,065 | INFO     | job.realtimelogging is not enabled
[2025-12-05 18:45:56] 2025-12-05 17:45:37,071 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-05 18:45:56] 2025-12-05 17:45:44,642 | INFO     | [monitor] cgroup control has ended
[2025-12-05 18:45:56] 2025-12-05 17:45:45,024 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140125351913280)>', '<ExcThread(monitor, started 140124490811136)>']
[2025-12-05 18:45:56] 2025-12-05 17:45:50,050 | INFO     | all workflow threads have been joined
[2025-12-05 18:45:56] 2025-12-05 17:45:50,050 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-05 18:45:56] 2025-12-05 17:45:50,050 | INFO     | traces error code: 0
[2025-12-05 18:45:56] 2025-12-05 17:45:50,051 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-05 18:45:56] 2025-12-05 17:45:55,937 | INFO     | PID=3867724 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-05 18:45:56] 2025-12-05 17:45:55,937 | INFO     | found 0 job(s) in 20 queues
[2025-12-05 18:45:56] 2025-12-05 17:45:55,937 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-05 18:45:56] 2025-12-05 17:45:55,937 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-05 18:45:56] 2025-12-05 17:45:55,937 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-05 18:45:56] 2025-12-05 17:45:55,937 | INFO     | [monitor] control thread has ended
[2025-12-05 18:45:56] 2025-12-05 17:45:55,986 [wrapper] ==== pilot stdout END ====
[2025-12-05 18:45:56] 2025-12-05 17:45:55,989 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-05 18:45:56] 2025-12-05 17:45:55,991 [wrapper] pilotpid: 3867724
[2025-12-05 18:45:56] 2025-12-05 17:45:55,994 [wrapper] Pilot exit status: 0
[2025-12-05 18:45:56] 2025-12-05 17:45:56,001 [wrapper] pandaids: 6895356905
[2025-12-05 18:45:56] 2025-12-05 17:45:56,017 [wrapper] cleanup supervisor_pilot 3931453 3867725
[2025-12-05 18:45:56] 2025-12-05 17:45:56,020 [wrapper] Test setup, not cleaning
[2025-12-05 18:45:56] 2025-12-05 17:45:56,022 [wrapper] apfmon messages muted
[2025-12-05 18:45:56] 2025-12-05 17:45:56,024 [wrapper] ==== wrapper stdout END ====
[2025-12-05 18:45:56] 2025-12-05 17:45:56,027 [wrapper] ==== wrapper stderr END ====
[2025-12-05 18:45:56]  *** Error codes and diagnostics ***
[2025-12-05 18:45:56]     "exeErrorCode": 0,
[2025-12-05 18:45:56]     "exeErrorDiag": "",
[2025-12-05 18:45:56]     "pilotErrorCode": 0,
[2025-12-05 18:45:56]     "pilotErrorDiag": "",
[2025-12-05 18:45:56]  *** Listing of results directory ***
[2025-12-05 18:45:56] total 1305580
[2025-12-05 18:45:56] -rw-r--r-- 1 boinc boinc    576529 Nov 23 12:12 pilot3.tar.gz
[2025-12-05 18:45:56] -rw-r--r-- 1 boinc boinc      5112 Nov 23 12:30 queuedata.json
[2025-12-05 18:45:56] -rwx------ 1 boinc boinc     36292 Nov 23 12:31 runpilot2-wrapper.sh
[2025-12-05 18:45:56] -rw-r--r-- 1 boinc boinc       100 Dec  5 10:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-05 18:45:56] -rwxr-xr-x 1 boinc boinc      7986 Dec  5 10:54 run_atlas
[2025-12-05 18:45:56] -rw-r--r-- 1 boinc boinc       105 Dec  5 10:54 job.xml
[2025-12-05 18:45:56] -rw-r--r-- 2 boinc boinc 408115466 Dec  5 10:54 EVNT.47483658._000708.pool.root.1
[2025-12-05 18:45:56] -rw-r--r-- 2 boinc boinc    590105 Dec  5 10:54 input.tar.gz
[2025-12-05 18:45:56] -rw-r--r-- 2 boinc boinc     15847 Dec  5 10:54 start_atlas.sh
[2025-12-05 18:45:56] drwxrwx--x 2 boinc boinc      4096 Dec  5 10:54 shared
[2025-12-05 18:45:56] -rw-r--r-- 1 boinc boinc         0 Dec  5 10:54 boinc_setup_complete
[2025-12-05 18:45:56] -rw-r--r-- 1 boinc boinc      6448 Dec  5 10:54 init_data.xml
[2025-12-05 18:45:56] -rw-r--r-- 1 boinc boinc         0 Dec  5 10:54 boinc_lockfile
[2025-12-05 18:45:56] -rw-r--r-- 1 boinc boinc      2786 Dec  5 10:54 pandaJob.out
[2025-12-05 18:45:56] -rw------- 1 boinc boinc    973673 Dec  5 10:54 agis_schedconf.cvmfs.json
[2025-12-05 18:45:56] drwx------ 5 boinc boinc      4096 Dec  5 10:54 pilot3
[2025-12-05 18:45:56] -rw-r--r-- 1 boinc boinc       531 Dec  5 18:41 boinc_task_state.xml
[2025-12-05 18:45:56] -rw------- 1 boinc boinc 914612491 Dec  5 18:44 HITS.47556137._007036.pool.root.1
[2025-12-05 18:45:56] -rw------- 1 boinc boinc      1022 Dec  5 18:45 memory_monitor_summary.json
[2025-12-05 18:45:56] -rw------- 1 boinc boinc   1516240 Dec  5 18:45 agis_ddmendpoints.agis.ALL.json
[2025-12-05 18:45:56] -rw------- 1 boinc boinc   1165652 Dec  5 18:45 log.47556137._007036.job.log.tgz.1
[2025-12-05 18:45:56] -rw------- 1 boinc boinc      8562 Dec  5 18:45 heartbeat.json
[2025-12-05 18:45:56] -rw-r--r-- 1 boinc boinc      8192 Dec  5 18:45 boinc_mmap_file
[2025-12-05 18:45:56] -rw-r--r-- 1 boinc boinc        28 Dec  5 18:45 wrapper_checkpoint.txt
[2025-12-05 18:45:56] -rw------- 1 boinc boinc       747 Dec  5 18:45 pilotlog.txt
[2025-12-05 18:45:56] -rw------- 1 boinc boinc        95 Dec  5 18:45 pilot_heartbeat.json
[2025-12-05 18:45:56] -rw------- 1 boinc boinc   3982895 Dec  5 18:45 log.47556137._007036.job.log.1
[2025-12-05 18:45:56] -rw------- 1 boinc boinc       353 Dec  5 18:45 output.list
[2025-12-05 18:45:56] -rw-r--r-- 1 boinc boinc       620 Dec  5 18:45 runtime_log
[2025-12-05 18:45:56] -rw------- 1 boinc boinc   5171200 Dec  5 18:45 result.tar.gz
[2025-12-05 18:45:56] -rw------- 1 boinc boinc       669 Dec  5 18:45 ua5NDmwUNh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmoqKKDmllneRn.diag
[2025-12-05 18:45:56] -rw-r--r-- 1 boinc boinc      8918 Dec  5 18:45 runtime_log.err
[2025-12-05 18:45:56] -rw-r--r-- 1 boinc boinc      9127 Dec  5 18:45 stderr.txt
[2025-12-05 18:45:56] HITS file was successfully produced:
[2025-12-05 18:45:56] -rw------- 1 boinc boinc 914612491 Dec  5 18:44 shared/HITS.pool.root.1
[2025-12-05 18:45:56]  *** Contents of shared directory: ***
[2025-12-05 18:45:56] total 1297388
[2025-12-05 18:45:56] -rw-r--r-- 2 boinc boinc 408115466 Dec  5 10:54 ATLAS.root_0
[2025-12-05 18:45:56] -rw-r--r-- 2 boinc boinc    590105 Dec  5 10:54 input.tar.gz
[2025-12-05 18:45:56] -rw-r--r-- 2 boinc boinc     15847 Dec  5 10:54 start_atlas.sh
[2025-12-05 18:45:56] -rw------- 1 boinc boinc 914612491 Dec  5 18:44 HITS.pool.root.1
[2025-12-05 18:45:56] -rw------- 1 boinc boinc   5171200 Dec  5 18:45 result.tar.gz
18:45:57 (3864005): run_atlas exited; CPU time 83456.818640
18:45:57 (3864005): called boinc_finish(0)

</stderr_txt>
]]>

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