Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
02:56:10 (6356): wrapper (7.7.26015): starting
02:56:10 (6356): wrapper: running run_atlas (--nthreads 8)
[2025-12-03 02:56:10] Arguments: --nthreads 8
[2025-12-03 02:56:10] Threads: 8
[2025-12-03 02:56:10] Checking for CVMFS
[2025-12-03 02:56:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 02:56:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 02:56:10] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 02:56:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 02:56:10] 2.11.0.0 4127 75535 96892 153576 1 1 3576942 4096000 0 130560 15 7346698 99.386 9312998 766 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-03 02:56:10] CVMFS is ok
[2025-12-03 02:56:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-03 02:56:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-03 02:56:10] Further information can be found at the LHC@home message board.
[2025-12-03 02:56:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 02:56:10] Checking for apptainer binary...
[2025-12-03 02:56:10] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-03 02:56:10] apptainer is not installed, using version from CVMFS
[2025-12-03 02:56:10] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 02:56:11] WARNING: Environment variable TMPDIR already has value [/tmp/job_10947017/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node399
[2025-12-03 02:56:11] apptainer works
[2025-12-03 02:56:11] Set ATHENA_PROC_NUMBER=8
[2025-12-03 02:56:11] Set ATHENA_CORE_NUMBER=8
[2025-12-03 02:56:11] Starting ATLAS job with PandaID=6908987264
[2025-12-03 02:56:11] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10947017/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 03:57:31]  *** The last 200 lines of the pilot log: ***
[2025-12-03 03:57:31]  protocol_id=None
[2025-12-03 03:57:31]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-03 03:57:31]  replicas=None
[2025-12-03 03:57:31]  scope=mc23_13p6TeV
[2025-12-03 03:57:31]  status=None
[2025-12-03 03:57:31]  status_code=0
[2025-12-03 03:57:31]  storage_token=
[2025-12-03 03:57:31]  surl=/tmp/job_10947017/atlas/pilot/slots/0/PanDA_Pilot-6908987264/log.46965017._001422.job.log.tgz.1
[2025-12-03 03:57:31]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7f/8c/log.46965017._001422.job.log.tgz.1
[2025-12-03 03:57:31]  workdir=None
[2025-12-03 03:57:31] ]
[2025-12-03 03:57:31] 2025-12-03 02:57:07,229 | INFO     | transferring file log.46965017._001422.job.log.tgz.1 from /tmp/job_10947017/atlas/pilot/slots/0/PanDA_Pilot-6908987264/log.46965017._001422.job.log.tgz.1 to /tmp/j
[2025-12-03 03:57:31] 2025-12-03 02:57:07,230 | INFO     | executing command: /usr/bin/env mv /tmp/job_10947017/atlas/pilot/slots/0/PanDA_Pilot-6908987264/log.46965017._001422.job.log.tgz.1 /tmp/job_10947017/atlas/pilot/sl
[2025-12-03 03:57:31] 2025-12-03 02:57:07,237 | INFO     | adding to output.list: log.46965017._001422.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7f/8c/log.46965017._001422.job.log.tg
[2025-12-03 03:57:31] 2025-12-03 02:57:07,238 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-03 03:57:31] 2025-12-03 02:57:07,238 | INFO     | summary of transferred files:
[2025-12-03 03:57:31] 2025-12-03 02:57:07,238 | INFO     |  -- lfn=log.46965017._001422.job.log.tgz.1, status_code=0, status=transferred
[2025-12-03 03:57:31] 2025-12-03 02:57:07,238 | INFO     | stage-out finished correctly
[2025-12-03 03:57:31] 2025-12-03 02:57:07,238 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 03:57:31] 2025-12-03 02:57:07,673 | INFO     | time since job start (3651s) is within the limit (172800.0s)
[2025-12-03 03:57:31] 2025-12-03 02:57:08,229 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-03 03:57:31] 2025-12-03 02:57:09,641 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 03:57:31] 2025-12-03 02:57:09,641 | INFO     | job 6908987264 has state=finished
[2025-12-03 03:57:31] 2025-12-03 02:57:09,641 | INFO     | preparing for final server update for job 6908987264 in state='finished'
[2025-12-03 03:57:31] 2025-12-03 02:57:09,642 | INFO     | this job has now completed (state=finished)
[2025-12-03 03:57:31] 2025-12-03 02:57:09,642 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-03 03:57:31] 2025-12-03 02:57:09,642 | INFO     | log transfer has been attempted: DONE
[2025-12-03 03:57:31] 2025-12-03 02:57:09,642 | INFO     | job 6908987264 has finished - writing final server update
[2025-12-03 03:57:31] 2025-12-03 02:57:09,642 | INFO     | total number of processed events: 400 (read)
[2025-12-03 03:57:31] 2025-12-03 02:57:09,642 | INFO     | executing command: lscpu
[2025-12-03 03:57:31] 2025-12-03 02:57:09,673 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-03 03:57:31] 2025-12-03 02:57:09,679 | INFO     | time since job start (3653s) is within the limit (172800.0s)
[2025-12-03 03:57:31] 2025-12-03 02:57:10,360 | WARNING  | process 19520 can no longer be monitored (due to stat problems) - aborting
[2025-12-03 03:57:31] 2025-12-03 02:57:10,361 | INFO     | using path: /tmp/job_10947017/atlas/pilot/slots/0/PanDA_Pilot-6908987264/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 03:57:31] 2025-12-03 02:57:10,466 | INFO     | number of running child processes to parent process 19520: 1
[2025-12-03 03:57:31] 2025-12-03 02:57:10,466 | INFO     | maximum number of monitored processes: 6
[2025-12-03 03:57:31] 2025-12-03 02:57:11,417 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 03:57:31] 2025-12-03 02:57:11,421 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2738.26084375
[2025-12-03 03:57:31] 2025-12-03 02:57:11,426 | INFO     | using path: /tmp/job_10947017/atlas/pilot/slots/0/PanDA_Pilot-6908987264/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 03:57:31] 2025-12-03 02:57:11,427 | INFO     | extracted standard info from prmon json
[2025-12-03 03:57:31] 2025-12-03 02:57:11,427 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 03:57:31] 2025-12-03 02:57:11,427 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 03:57:31] 2025-12-03 02:57:11,427 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-03 03:57:31] 2025-12-03 02:57:11,427 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-03 03:57:31] 2025-12-03 02:57:11,428 | INFO     | fitting pss+swap vs Time
[2025-12-03 03:57:31] 2025-12-03 02:57:11,428 | INFO     | sum of square deviations: 46147842.0
[2025-12-03 03:57:31] 2025-12-03 02:57:11,428 | INFO     | sum of deviations: -6058123256.000001
[2025-12-03 03:57:31] 2025-12-03 02:57:11,428 | INFO     | mean x: 1764728886.0
[2025-12-03 03:57:31] 2025-12-03 02:57:11,428 | INFO     | mean y: 2696592.4905660376
[2025-12-03 03:57:31] 2025-12-03 02:57:11,428 | INFO     | intersect: 231669978126.72946
[2025-12-03 03:57:31] 2025-12-03 02:57:11,428 | INFO     | chi2: 0.10687073092426705
[2025-12-03 03:57:31] 2025-12-03 02:57:11,428 | INFO     | current memory leak: -131.28 B/s (using 53 data points, chi2=0.11)
[2025-12-03 03:57:31] 2025-12-03 02:57:11,428 | INFO     | could have reported an average CPU frequency of 2479 MHz (5 samples)
[2025-12-03 03:57:31] 2025-12-03 02:57:11,428 | INFO     | ..............................
[2025-12-03 03:57:31] 2025-12-03 02:57:11,428 | INFO     | . Timing measurements:
[2025-12-03 03:57:31] 2025-12-03 02:57:11,428 | INFO     | . get job = 0 s
[2025-12-03 03:57:31] 2025-12-03 02:57:11,428 | INFO     | . initial setup = 1 s
[2025-12-03 03:57:31] 2025-12-03 02:57:11,428 | INFO     | . payload setup = 2 s
[2025-12-03 03:57:31] 2025-12-03 02:57:11,428 | INFO     | . stage-in = 0 s
[2025-12-03 03:57:31] 2025-12-03 02:57:11,428 | INFO     | . payload execution = 3631 s
[2025-12-03 03:57:31] 2025-12-03 02:57:11,429 | INFO     | . stage-out = 0 s
[2025-12-03 03:57:31] 2025-12-03 02:57:11,429 | INFO     | . log creation = 0 s
[2025-12-03 03:57:31] 2025-12-03 02:57:11,429 | INFO     | ..............................
[2025-12-03 03:57:31] 2025-12-03 02:57:11,684 | INFO     | time since job start (3655s) is within the limit (172800.0s)
[2025-12-03 03:57:31] 2025-12-03 02:57:11,787 | INFO     | 
[2025-12-03 03:57:31] 2025-12-03 02:57:11,787 | INFO     | job summary report
[2025-12-03 03:57:31] 2025-12-03 02:57:11,787 | INFO     | --------------------------------------------------
[2025-12-03 03:57:31] 2025-12-03 02:57:11,787 | INFO     | PanDA job id: 6908987264
[2025-12-03 03:57:31] 2025-12-03 02:57:11,787 | INFO     | task id: 46965017
[2025-12-03 03:57:31] 2025-12-03 02:57:11,787 | INFO     | errors: (none)
[2025-12-03 03:57:31] 2025-12-03 02:57:11,787 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 03:57:31] 2025-12-03 02:57:11,788 | INFO     | pilot state: finished 
[2025-12-03 03:57:31] 2025-12-03 02:57:11,788 | INFO     | transexitcode: 0
[2025-12-03 03:57:31] 2025-12-03 02:57:11,788 | INFO     | exeerrorcode: 0
[2025-12-03 03:57:31] 2025-12-03 02:57:11,788 | INFO     | exeerrordiag: 
[2025-12-03 03:57:31] 2025-12-03 02:57:11,788 | INFO     | exitcode: 0
[2025-12-03 03:57:31] 2025-12-03 02:57:11,788 | INFO     | exitmsg: OK
[2025-12-03 03:57:31] 2025-12-03 02:57:11,788 | INFO     | cpuconsumptiontime: 25429 s
[2025-12-03 03:57:31] 2025-12-03 02:57:11,788 | INFO     | nevents: 400
[2025-12-03 03:57:31] 2025-12-03 02:57:11,788 | INFO     | neventsw: 0
[2025-12-03 03:57:31] 2025-12-03 02:57:11,788 | INFO     | pid: 19520
[2025-12-03 03:57:31] 2025-12-03 02:57:11,788 | INFO     | pgrp: 19520
[2025-12-03 03:57:31] 2025-12-03 02:57:11,788 | INFO     | corecount: 8
[2025-12-03 03:57:31] 2025-12-03 02:57:11,788 | INFO     | event service: False
[2025-12-03 03:57:31] 2025-12-03 02:57:11,788 | INFO     | sizes: {0: 2284104, 2: 2284366, 10: 2284394, 3637: 2310239, 3638: 2319322, 3639: 2319322, 3642: 2319676}
[2025-12-03 03:57:31] 2025-12-03 02:57:11,788 | INFO     | --------------------------------------------------
[2025-12-03 03:57:31] 2025-12-03 02:57:11,788 | INFO     | 
[2025-12-03 03:57:31] 2025-12-03 02:57:11,788 | INFO     | executing command: ls -lF /tmp/job_10947017/atlas/pilot/slots/0
[2025-12-03 03:57:31] 2025-12-03 02:57:11,797 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 03:57:31] 2025-12-03 02:57:11,797 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 03:57:31] 2025-12-03 02:57:11,797 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 03:57:31] 2025-12-03 02:57:11,797 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 03:57:31] 2025-12-03 02:57:11,797 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 03:57:31] 2025-12-03 02:57:11,797 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 03:57:31] 2025-12-03 02:57:11,797 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 03:57:31] 2025-12-03 02:57:11,797 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 03:57:31] 2025-12-03 02:57:11,797 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 03:57:31] 2025-12-03 02:57:11,797 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 03:57:31] 2025-12-03 02:57:11,797 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 03:57:31] 2025-12-03 02:57:11,798 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 03:57:31] 2025-12-03 02:57:11,798 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 03:57:31] 2025-12-03 02:57:11,798 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 03:57:31] 2025-12-03 02:57:11,798 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 03:57:31] 2025-12-03 02:57:11,798 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 03:57:31] 2025-12-03 02:57:11,798 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 03:57:31] 2025-12-03 02:57:11,798 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 03:57:31] 2025-12-03 02:57:11,798 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 03:57:31] 2025-12-03 02:57:11,798 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 03:57:31] 2025-12-03 02:57:11,798 | INFO     | job 6908987264 has completed (purged errors)
[2025-12-03 03:57:31] 2025-12-03 02:57:11,798 | INFO     | overall cleanup function is called
[2025-12-03 03:57:31] 2025-12-03 02:57:12,804 | INFO     | --- collectZombieJob: --- 10, [19520]
[2025-12-03 03:57:31] 2025-12-03 02:57:12,804 | INFO     | zombie collector waiting for pid 19520
[2025-12-03 03:57:31] 2025-12-03 02:57:12,804 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 03:57:31] 2025-12-03 02:57:12,804 | INFO     | collected zombie processes
[2025-12-03 03:57:31] 2025-12-03 02:57:12,804 | INFO     | will attempt to kill all subprocesses of pid=19520
[2025-12-03 03:57:31] 2025-12-03 02:57:12,907 | INFO     | process IDs to be killed: [19520] (in reverse order)
[2025-12-03 03:57:31] 2025-12-03 02:57:12,944 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 03:57:31] 2025-12-03 02:57:12,944 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 03:57:31] 2025-12-03 02:57:12,949 | INFO     | did not find any defunct processes belonging to 19520
[2025-12-03 03:57:31] 2025-12-03 02:57:12,952 | INFO     | did not find any defunct processes belonging to 19520
[2025-12-03 03:57:31] 2025-12-03 02:57:12,953 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 03:57:31] 2025-12-03 02:57:12,953 | INFO     | ready for new job
[2025-12-03 03:57:31] 2025-12-03 02:57:12,953 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 03:57:31] 2025-12-03 02:57:12,954 | INFO     | ***************************************
[2025-12-03 03:57:31] 2025-12-03 02:57:12,954 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 03:57:31] 2025-12-03 02:57:12,954 | INFO     | ***************************************
[2025-12-03 03:57:31] 2025-12-03 02:57:12,954 | INFO     | 
[2025-12-03 03:57:31] 2025-12-03 02:57:12,968 | INFO     | architecture information:
[2025-12-03 03:57:31] 2025-12-03 02:57:12,968 | INFO     | executing command: cat /etc/os-release
[2025-12-03 03:57:31] 2025-12-03 02:57:12,974 | INFO     | cat /etc/os-release:
[2025-12-03 03:57:31] NAME="CentOS Linux"
[2025-12-03 03:57:31] VERSION="7 (Core)"
[2025-12-03 03:57:31] ID="centos"
[2025-12-03 03:57:31] ID_LIKE="rhel fedora"
[2025-12-03 03:57:31] VERSION_ID="7"
[2025-12-03 03:57:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 03:57:31] ANSI_COLOR="0;31"
[2025-12-03 03:57:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 03:57:31] HOME_URL="https://www.centos.org/"
[2025-12-03 03:57:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 03:57:31] 
[2025-12-03 03:57:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 03:57:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 03:57:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 03:57:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 03:57:31] 
[2025-12-03 03:57:31] 2025-12-03 02:57:12,974 | INFO     | ***************************************
[2025-12-03 03:57:31] 2025-12-03 02:57:13,477 | INFO     | executing command: df -mP /tmp/job_10947017/atlas/pilot/slots/0
[2025-12-03 03:57:31] 2025-12-03 02:57:13,483 | INFO     | sufficient remaining disk space (223276433408 B)
[2025-12-03 03:57:31] 2025-12-03 02:57:13,483 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 03:57:31] 2025-12-03 02:57:13,483 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 03:57:31] 2025-12-03 02:57:13,483 | INFO     | update_server=False
[2025-12-03 03:57:31] 2025-12-03 02:57:13,483 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 03:57:31] 2025-12-03 02:57:13,483 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 03:57:31] 2025-12-03 02:57:13,483 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-12-03 03:57:31] 2025-12-03 02:57:13,483 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 03:57:31] 2025-12-03 02:57:13,483 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 03:57:31] 2025-12-03 02:57:13,484 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 03:57:31] 2025-12-03 02:57:13,628 | INFO     | all payload control threads have been joined
[2025-12-03 03:57:31] 2025-12-03 02:57:13,670 | INFO     | all data control threads have been joined
[2025-12-03 03:57:31] 2025-12-03 02:57:13,978 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 03:57:31] 2025-12-03 02:57:13,979 | INFO     | aborting loop
[2025-12-03 03:57:31] 2025-12-03 02:57:14,282 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 03:57:31] 2025-12-03 02:57:14,331 | INFO     | all job control threads have been joined
[2025-12-03 03:57:31] 2025-12-03 02:57:14,488 | INFO     | [job] retrieve thread has finished
[2025-12-03 03:57:31] 2025-12-03 02:57:14,634 | INFO     | [payload] control thread has finished
[2025-12-03 03:57:31] 2025-12-03 02:57:14,675 | INFO     | [data] control thread has finished
[2025-12-03 03:57:31] 2025-12-03 02:57:14,814 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 03:57:31] 2025-12-03 02:57:14,818 | INFO     | [data] copytool_in thread has finished
[2025-12-03 03:57:31] 2025-12-03 02:57:14,983 | INFO     | [job] job monitor thread has finished
[2025-12-03 03:57:31] 2025-12-03 02:57:15,336 | INFO     | [job] control thread has finished
[2025-12-03 03:57:31] 2025-12-03 02:57:15,488 | INFO     | [data] copytool_out thread has finished
[2025-12-03 03:57:31] 2025-12-03 02:57:15,524 | INFO     | [payload] failed_post thread has finished
[2025-12-03 03:57:31] 2025-12-03 02:57:15,878 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 03:57:31] 2025-12-03 02:57:15,878 | INFO     | [job] validate thread has finished
[2025-12-03 03:57:31] 2025-12-03 02:57:15,885 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 03:57:31] 2025-12-03 02:57:15,885 | INFO     | [payload] validate_post thread has finished
[2025-12-03 03:57:31] 2025-12-03 02:57:16,487 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 03:57:31] 2025-12-03 02:57:17,493 | INFO     | [job] queue monitor thread has finished
[2025-12-03 03:57:31] 2025-12-03 02:57:18,288 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 03:57:31] 2025-12-03 02:57:21,635 | INFO     | [monitor] cgroup control has ended
[2025-12-03 03:57:31] 2025-12-03 02:57:24,112 | INFO     | job.realtimelogging is not enabled
[2025-12-03 03:57:31] 2025-12-03 02:57:25,117 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 03:57:31] 2025-12-03 02:57:25,917 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456065021696)>']
[2025-12-03 03:57:31] 2025-12-03 02:57:26,538 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 03:57:31] 2025-12-03 02:57:26,538 | INFO     | [monitor] control thread has ended
[2025-12-03 03:57:31] 2025-12-03 02:57:30,942 | INFO     | all workflow threads have been joined
[2025-12-03 03:57:31] 2025-12-03 02:57:30,942 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 03:57:31] 2025-12-03 02:57:30,942 | INFO     | traces error code: 0
[2025-12-03 03:57:31] 2025-12-03 02:57:30,942 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 03:57:31] 2025-12-03 02:57:30,994 [wrapper] ==== pilot stdout END ====
[2025-12-03 03:57:31] 2025-12-03 02:57:30,996 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 03:57:31] 2025-12-03 02:57:30,997 [wrapper] pilotpid: 11206
[2025-12-03 03:57:31] 2025-12-03 02:57:30,998 [wrapper] Pilot exit status: 0
[2025-12-03 03:57:31] 2025-12-03 02:57:31,002 [wrapper] pandaids: 6908987264
[2025-12-03 03:57:31] 2025-12-03 02:57:31,027 [wrapper] cleanup supervisor_pilot 16752 11207
[2025-12-03 03:57:31] 2025-12-03 02:57:31,028 [wrapper] Test setup, not cleaning
[2025-12-03 03:57:31] 2025-12-03 02:57:31,029 [wrapper] apfmon messages muted
[2025-12-03 03:57:31] 2025-12-03 02:57:31,030 [wrapper] ==== wrapper stdout END ====
[2025-12-03 03:57:31] 2025-12-03 02:57:31,031 [wrapper] ==== wrapper stderr END ====
[2025-12-03 03:57:31]  *** Error codes and diagnostics ***
[2025-12-03 03:57:31]     "exeErrorCode": 0,
[2025-12-03 03:57:31]     "exeErrorDiag": "",
[2025-12-03 03:57:31]     "pilotErrorCode": 0,
[2025-12-03 03:57:31]     "pilotErrorDiag": "",
[2025-12-03 03:57:31]  *** Listing of results directory ***
[2025-12-03 03:57:31] total 474828
[2025-12-03 03:57:31] -rw------- 1 mf493845 unix-user    576529 Nov 30 12:05 pilot3.tar.gz
[2025-12-03 03:57:31] -rwx------ 1 mf493845 unix-user     36292 Nov 30 12:08 runpilot2-wrapper.sh
[2025-12-03 03:57:31] -rw------- 1 mf493845 unix-user      5112 Nov 30 12:08 queuedata.json
[2025-12-03 03:57:31] -rw------- 1 mf493845 unix-user       100 Dec  3 01:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 03:57:31] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  3 01:45 run_atlas
[2025-12-03 03:57:31] -rw------- 1 mf493845 unix-user       105 Dec  3 01:45 job.xml
[2025-12-03 03:57:31] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 02:56 start_atlas.sh
[2025-12-03 03:57:31] drwxrwx--x 2 mf493845 unix-user       100 Dec  3 02:56 shared
[2025-12-03 03:57:31] -rw-r--r-- 2 mf493845 unix-user    589971 Dec  3 02:56 input.tar.gz
[2025-12-03 03:57:31] -rw------- 1 mf493845 unix-user      6392 Dec  3 02:56 init_data.xml
[2025-12-03 03:57:31] -rw-r--r-- 2 mf493845 unix-user 277926218 Dec  3 02:56 EVNT.46965009._000055.pool.root.1
[2025-12-03 03:57:31] -rw------- 1 mf493845 unix-user         0 Dec  3 02:56 boinc_setup_complete
[2025-12-03 03:57:31] -rw------- 1 mf493845 unix-user      8192 Dec  3 02:56 boinc_mmap_file
[2025-12-03 03:57:31] -rw------- 1 mf493845 unix-user         0 Dec  3 02:56 boinc_lockfile
[2025-12-03 03:57:31] -rw------- 1 mf493845 unix-user      2651 Dec  3 02:56 pandaJob.out
[2025-12-03 03:57:31] -rw------- 1 mf493845 unix-user    989300 Dec  3 02:56 agis_schedconf.cvmfs.json
[2025-12-03 03:57:31] -rw------- 1 mf493845 unix-user   1516240 Dec  3 02:56 agis_ddmendpoints.agis.ALL.json
[2025-12-03 03:57:31] drwx------ 5 mf493845 unix-user       440 Dec  3 02:56 pilot3
[2025-12-03 03:57:31] -rw------- 1 mf493845 unix-user 202706339 Dec  3 03:56 HITS.46965017._001422.pool.root.1
[2025-12-03 03:57:31] -rw------- 1 mf493845 unix-user        95 Dec  3 03:56 pilot_heartbeat.json
[2025-12-03 03:57:31] -rw------- 1 mf493845 unix-user      1014 Dec  3 03:57 memory_monitor_summary.json
[2025-12-03 03:57:31] -rw------- 1 mf493845 unix-user    296189 Dec  3 03:57 log.46965017._001422.job.log.tgz.1
[2025-12-03 03:57:31] -rw------- 1 mf493845 unix-user      7765 Dec  3 03:57 heartbeat.json
[2025-12-03 03:57:31] -rw------- 1 mf493845 unix-user      4638 Dec  3 03:57 pilotlog.txt
[2025-12-03 03:57:31] -rw------- 1 mf493845 unix-user    558439 Dec  3 03:57 log.46965017._001422.job.log.1
[2025-12-03 03:57:31] -rw------- 1 mf493845 unix-user       357 Dec  3 03:57 output.list
[2025-12-03 03:57:31] -rw------- 1 mf493845 unix-user       620 Dec  3 03:57 runtime_log
[2025-12-03 03:57:31] -rw------- 1 mf493845 unix-user    870400 Dec  3 03:57 result.tar.gz
[2025-12-03 03:57:31] -rw------- 1 mf493845 unix-user       644 Dec  3 03:57 XLNLDm8Suj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm2bPKDmiOMMXn.diag
[2025-12-03 03:57:31] -rw------- 1 mf493845 unix-user      9220 Dec  3 03:57 runtime_log.err
[2025-12-03 03:57:31] -rw------- 1 mf493845 unix-user     22551 Dec  3 03:57 stderr.txt
[2025-12-03 03:57:31] HITS file was successfully produced:
[2025-12-03 03:57:31] -rw------- 1 mf493845 unix-user 202706339 Dec  3 03:56 shared/HITS.pool.root.1
[2025-12-03 03:57:31]  *** Contents of shared directory: ***
[2025-12-03 03:57:31] total 470820
[2025-12-03 03:57:31] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 02:56 start_atlas.sh
[2025-12-03 03:57:31] -rw-r--r-- 2 mf493845 unix-user    589971 Dec  3 02:56 input.tar.gz
[2025-12-03 03:57:31] -rw-r--r-- 2 mf493845 unix-user 277926218 Dec  3 02:56 ATLAS.root_0
[2025-12-03 03:57:31] -rw------- 1 mf493845 unix-user 202706339 Dec  3 03:56 HITS.pool.root.1
[2025-12-03 03:57:31] -rw------- 1 mf493845 unix-user    870400 Dec  3 03:57 result.tar.gz
03:57:32 (6356): run_atlas exited; CPU time 25476.251421
03:57:32 (6356): called boinc_finish(0)

</stderr_txt>
]]>

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