Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
03:38:02 (27167): wrapper (7.7.26015): starting
03:38:02 (27167): wrapper: running run_atlas (--nthreads 8)
[2025-12-03 03:38:02] Arguments: --nthreads 8
[2025-12-03 03:38:02] Threads: 8
[2025-12-03 03:38:02] Checking for CVMFS
[2025-12-03 03:38:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 03:38:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 03:38:03] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 03:38:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 03:38:04] 2.11.0.0 11065 75159 77736 153577 1 76 3887158 4096000 891 130560 2 5782509 99.423 5692177 556 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-03 03:38:04] CVMFS is ok
[2025-12-03 03:38:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-03 03:38:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-03 03:38:04] Further information can be found at the LHC@home message board.
[2025-12-03 03:38:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 03:38:04] Checking for apptainer binary...
[2025-12-03 03:38:04] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-03 03:38:04] apptainer is not installed, using version from CVMFS
[2025-12-03 03:38:04] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 03:38:04] WARNING: Environment variable TMPDIR already has value [/tmp/job_10946921/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node384
[2025-12-03 03:38:04] apptainer works
[2025-12-03 03:38:04] Set ATHENA_PROC_NUMBER=8
[2025-12-03 03:38:04] Set ATHENA_CORE_NUMBER=8
[2025-12-03 03:38:04] Starting ATLAS job with PandaID=6901272536
[2025-12-03 03:38:04] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10946921/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 07:32:37]  *** The last 200 lines of the pilot log: ***
[2025-12-03 07:32:37] 2025-12-03 06:31:35,925 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 07:32:37] 2025-12-03 06:31:35,930 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2870.68478125
[2025-12-03 07:32:37] 2025-12-03 06:31:35,935 | INFO     | using path: /tmp/job_10946921/atlas/pilot/slots/0/PanDA_Pilot-6901272536/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 07:32:37] 2025-12-03 06:31:35,935 | INFO     | extracted standard info from prmon json
[2025-12-03 07:32:37] 2025-12-03 06:31:35,935 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 07:32:37] 2025-12-03 06:31:35,935 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 07:32:37] 2025-12-03 06:31:35,937 | INFO     | fitting pss+swap vs Time
[2025-12-03 07:32:37] 2025-12-03 06:31:35,938 | INFO     | sum of square deviations: 3772698873.495652
[2025-12-03 07:32:37] 2025-12-03 06:31:35,938 | INFO     | sum of deviations: 133942698317.80869
[2025-12-03 07:32:37] 2025-12-03 06:31:35,938 | INFO     | mean x: 1764736494.5043478
[2025-12-03 07:32:37] 2025-12-03 06:31:35,939 | INFO     | mean y: 3432748.191304348
[2025-12-03 07:32:37] 2025-12-03 06:31:35,939 | INFO     | intersect: -62650273741.45692
[2025-12-03 07:32:37] 2025-12-03 06:31:35,939 | INFO     | chi2: 3.531688283051911
[2025-12-03 07:32:37] 2025-12-03 06:31:35,939 | INFO     | sum of square deviations: 3531959780.9955525
[2025-12-03 07:32:37] 2025-12-03 06:31:35,940 | INFO     | sum of deviations: 185284686833.36887
[2025-12-03 07:32:37] 2025-12-03 06:31:35,940 | INFO     | mean x: 1764736342.0044444
[2025-12-03 07:32:37] 2025-12-03 06:31:35,940 | INFO     | mean y: 3464902.631111111
[2025-12-03 07:32:37] 2025-12-03 06:31:35,940 | INFO     | intersect: -92573642637.2495
[2025-12-03 07:32:37] 2025-12-03 06:31:35,940 | INFO     | chi2: 1.7084031479847475
[2025-12-03 07:32:37] 2025-12-03 06:31:35,940 | INFO     | current chi2=1.7084031479847475 (change=51.62644573749217 %)
[2025-12-03 07:32:37] 2025-12-03 06:31:35,940 | INFO     | sum of square deviations: 3301686000.995469
[2025-12-03 07:32:37] 2025-12-03 06:31:35,941 | INFO     | sum of deviations: 161739804899.75912
[2025-12-03 07:32:37] 2025-12-03 06:31:35,941 | INFO     | mean x: 1764736189.5045455
[2025-12-03 07:32:37] 2025-12-03 06:31:35,941 | INFO     | mean y: 3449319.7409090907
[2025-12-03 07:32:37] 2025-12-03 06:31:35,941 | INFO     | intersect: -86445742670.03401
[2025-12-03 07:32:37] 2025-12-03 06:31:35,941 | INFO     | chi2: 1.6539151400105847
[2025-12-03 07:32:37] 2025-12-03 06:31:35,941 | INFO     | current chi2=1.6539151400105847 (change=3.1894115881510436 %)
[2025-12-03 07:32:37] 2025-12-03 06:31:35,941 | INFO     | right removable region: 219
[2025-12-03 07:32:37] 2025-12-03 06:31:35,941 | INFO     | sum of square deviations: 3531973200.0
[2025-12-03 07:32:37] 2025-12-03 06:31:35,942 | INFO     | sum of deviations: 81117738695.0
[2025-12-03 07:32:37] 2025-12-03 06:31:35,942 | INFO     | mean x: 1764736647.0
[2025-12-03 07:32:37] 2025-12-03 06:31:35,942 | INFO     | mean y: 3465900.031111111
[2025-12-03 07:32:37] 2025-12-03 06:31:35,942 | INFO     | intersect: -40526696162.59056
[2025-12-03 07:32:37] 2025-12-03 06:31:35,942 | INFO     | chi2: 2.003798458740444
[2025-12-03 07:32:37] 2025-12-03 06:31:35,943 | INFO     | current chi2=2.003798458740444 (change=43.262306915465935 %)
[2025-12-03 07:32:37] 2025-12-03 06:31:35,943 | INFO     | sum of square deviations: 3301699115.0
[2025-12-03 07:32:37] 2025-12-03 06:31:35,943 | INFO     | sum of deviations: 71970764173.0
[2025-12-03 07:32:37] 2025-12-03 06:31:35,943 | INFO     | mean x: 1764736799.5
[2025-12-03 07:32:37] 2025-12-03 06:31:35,943 | INFO     | mean y: 3471951.3181818184
[2025-12-03 07:32:37] 2025-12-03 06:31:35,944 | INFO     | intersect: -38464435510.997406
[2025-12-03 07:32:37] 2025-12-03 06:31:35,944 | INFO     | chi2: 2.003227527907521
[2025-12-03 07:32:37] 2025-12-03 06:31:35,944 | INFO     | current chi2=2.003227527907521 (change=0.028492427990078423 %)
[2025-12-03 07:32:37] 2025-12-03 06:31:35,944 | INFO     | left removable region: 20
[2025-12-03 07:32:37] 2025-12-03 06:31:35,944 | INFO     | sum of square deviations: 2443580700.0
[2025-12-03 07:32:37] 2025-12-03 06:31:35,944 | INFO     | sum of deviations: 84465087159.99994
[2025-12-03 07:32:37] 2025-12-03 06:31:35,945 | INFO     | mean x: 1764736769.0
[2025-12-03 07:32:37] 2025-12-03 06:31:35,945 | INFO     | mean y: 3498439.1005025124
[2025-12-03 07:32:37] 2025-12-03 06:31:35,945 | INFO     | intersect: -60996592537.24486
[2025-12-03 07:32:37] 2025-12-03 06:31:35,945 | INFO     | chi2: 0.06330468242271635
[2025-12-03 07:32:37] 2025-12-03 06:31:35,945 | INFO     | current memory leak: 34.57 B/s (using 199 data points, chi2=0.06)
[2025-12-03 07:32:37] 2025-12-03 06:31:35,945 | INFO     | could have reported an average CPU frequency of 2854 MHz (11 samples)
[2025-12-03 07:32:37] 2025-12-03 06:31:35,945 | INFO     | ..............................
[2025-12-03 07:32:37] 2025-12-03 06:31:35,945 | INFO     | . Timing measurements:
[2025-12-03 07:32:37] 2025-12-03 06:31:35,945 | INFO     | . get job = 0 s
[2025-12-03 07:32:37] 2025-12-03 06:31:35,945 | INFO     | . initial setup = 1 s
[2025-12-03 07:32:37] 2025-12-03 06:31:35,945 | INFO     | . payload setup = 4 s
[2025-12-03 07:32:37] 2025-12-03 06:31:35,945 | INFO     | . stage-in = 0 s
[2025-12-03 07:32:37] 2025-12-03 06:31:35,945 | INFO     | . payload execution = 13982 s
[2025-12-03 07:32:37] 2025-12-03 06:31:35,945 | INFO     | . stage-out = 1 s
[2025-12-03 07:32:37] 2025-12-03 06:31:35,945 | INFO     | . log creation = 0 s
[2025-12-03 07:32:37] 2025-12-03 06:31:35,945 | INFO     | ..............................
[2025-12-03 07:32:37] 2025-12-03 06:31:35,995 | INFO     | 
[2025-12-03 07:32:37] 2025-12-03 06:31:35,995 | INFO     | job summary report
[2025-12-03 07:32:37] 2025-12-03 06:31:35,995 | INFO     | --------------------------------------------------
[2025-12-03 07:32:37] 2025-12-03 06:31:35,995 | INFO     | PanDA job id: 6901272536
[2025-12-03 07:32:37] 2025-12-03 06:31:35,995 | INFO     | task id: 47531058
[2025-12-03 07:32:37] 2025-12-03 06:31:35,995 | INFO     | errors: (none)
[2025-12-03 07:32:37] 2025-12-03 06:31:35,995 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 07:32:37] 2025-12-03 06:31:35,995 | INFO     | pilot state: finished 
[2025-12-03 07:32:37] 2025-12-03 06:31:35,995 | INFO     | transexitcode: 0
[2025-12-03 07:32:37] 2025-12-03 06:31:35,995 | INFO     | exeerrorcode: 0
[2025-12-03 07:32:37] 2025-12-03 06:31:35,995 | INFO     | exeerrordiag: 
[2025-12-03 07:32:37] 2025-12-03 06:31:35,995 | INFO     | exitcode: 0
[2025-12-03 07:32:37] 2025-12-03 06:31:35,995 | INFO     | exitmsg: OK
[2025-12-03 07:32:37] 2025-12-03 06:31:35,995 | INFO     | cpuconsumptiontime: 106339 s
[2025-12-03 07:32:37] 2025-12-03 06:31:35,995 | INFO     | nevents: 1000
[2025-12-03 07:32:37] 2025-12-03 06:31:35,995 | INFO     | neventsw: 0
[2025-12-03 07:32:37] 2025-12-03 06:31:35,995 | INFO     | pid: 9137
[2025-12-03 07:32:37] 2025-12-03 06:31:35,995 | INFO     | pgrp: 9137
[2025-12-03 07:32:37] 2025-12-03 06:31:35,995 | INFO     | corecount: 8
[2025-12-03 07:32:37] 2025-12-03 06:31:35,995 | INFO     | event service: False
[2025-12-03 07:32:37] 2025-12-03 06:31:35,995 | INFO     | sizes: {0: 2284242, 1: 2284608, 3: 2284870, 11: 2284898, 13990: 2335434, 13991: 2335433, 13992: 2344697, 13994: 2344887}
[2025-12-03 07:32:37] 2025-12-03 06:31:35,995 | INFO     | --------------------------------------------------
[2025-12-03 07:32:37] 2025-12-03 06:31:35,995 | INFO     | 
[2025-12-03 07:32:37] 2025-12-03 06:31:35,995 | INFO     | executing command: ls -lF /tmp/job_10946921/atlas/pilot/slots/0
[2025-12-03 07:32:37] 2025-12-03 06:31:36,004 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 07:32:37] 2025-12-03 06:31:36,004 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 07:32:37] 2025-12-03 06:31:36,004 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 07:32:37] 2025-12-03 06:31:36,004 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 07:32:37] 2025-12-03 06:31:36,004 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 07:32:37] 2025-12-03 06:31:36,004 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 07:32:37] 2025-12-03 06:31:36,004 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 07:32:37] 2025-12-03 06:31:36,004 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 07:32:37] 2025-12-03 06:31:36,004 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 07:32:37] 2025-12-03 06:31:36,004 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 07:32:37] 2025-12-03 06:31:36,004 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 07:32:37] 2025-12-03 06:31:36,004 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 07:32:37] 2025-12-03 06:31:36,004 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 07:32:37] 2025-12-03 06:31:36,004 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 07:32:37] 2025-12-03 06:31:36,004 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 07:32:37] 2025-12-03 06:31:36,004 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 07:32:37] 2025-12-03 06:31:36,004 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 07:32:37] 2025-12-03 06:31:36,004 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 07:32:37] 2025-12-03 06:31:36,005 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 07:32:37] 2025-12-03 06:31:36,005 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 07:32:37] 2025-12-03 06:31:36,005 | INFO     | job 6901272536 has completed (purged errors)
[2025-12-03 07:32:37] 2025-12-03 06:31:36,005 | INFO     | overall cleanup function is called
[2025-12-03 07:32:37] 2025-12-03 06:31:36,694 | INFO     | PID=32001 has CPU usage=7.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-03 07:32:37] 2025-12-03 06:31:36,694 | INFO     | .. there are 5 such processes running
[2025-12-03 07:32:37] 2025-12-03 06:31:37,012 | INFO     | --- collectZombieJob: --- 10, [9137]
[2025-12-03 07:32:37] 2025-12-03 06:31:37,012 | INFO     | zombie collector waiting for pid 9137
[2025-12-03 07:32:37] 2025-12-03 06:31:37,012 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 07:32:37] 2025-12-03 06:31:37,012 | INFO     | collected zombie processes
[2025-12-03 07:32:37] 2025-12-03 06:31:37,012 | INFO     | will attempt to kill all subprocesses of pid=9137
[2025-12-03 07:32:37] 2025-12-03 06:31:37,118 | INFO     | process IDs to be killed: [9137] (in reverse order)
[2025-12-03 07:32:37] 2025-12-03 06:31:37,157 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 07:32:37] 2025-12-03 06:31:37,157 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 07:32:37] 2025-12-03 06:31:37,161 | INFO     | did not find any defunct processes belonging to 9137
[2025-12-03 07:32:37] 2025-12-03 06:31:37,164 | INFO     | did not find any defunct processes belonging to 9137
[2025-12-03 07:32:37] 2025-12-03 06:31:37,165 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 07:32:37] 2025-12-03 06:31:37,165 | INFO     | ready for new job
[2025-12-03 07:32:37] 2025-12-03 06:31:37,165 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 07:32:37] 2025-12-03 06:31:37,166 | INFO     | ***************************************
[2025-12-03 07:32:37] 2025-12-03 06:31:37,166 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 07:32:37] 2025-12-03 06:31:37,166 | INFO     | ***************************************
[2025-12-03 07:32:37] 2025-12-03 06:31:37,166 | INFO     | 
[2025-12-03 07:32:37] 2025-12-03 06:31:37,181 | INFO     | architecture information:
[2025-12-03 07:32:37] 2025-12-03 06:31:37,181 | INFO     | executing command: cat /etc/os-release
[2025-12-03 07:32:37] 2025-12-03 06:31:37,186 | INFO     | cat /etc/os-release:
[2025-12-03 07:32:37] NAME="CentOS Linux"
[2025-12-03 07:32:37] VERSION="7 (Core)"
[2025-12-03 07:32:37] ID="centos"
[2025-12-03 07:32:37] ID_LIKE="rhel fedora"
[2025-12-03 07:32:37] VERSION_ID="7"
[2025-12-03 07:32:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 07:32:37] ANSI_COLOR="0;31"
[2025-12-03 07:32:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 07:32:37] HOME_URL="https://www.centos.org/"
[2025-12-03 07:32:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 07:32:37] 
[2025-12-03 07:32:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 07:32:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 07:32:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 07:32:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 07:32:37] 
[2025-12-03 07:32:37] 2025-12-03 06:31:37,186 | INFO     | ***************************************
[2025-12-03 07:32:37] 2025-12-03 06:31:37,689 | INFO     | executing command: df -mP /tmp/job_10946921/atlas/pilot/slots/0
[2025-12-03 07:32:37] 2025-12-03 06:31:37,695 | INFO     | sufficient remaining disk space (219709177856 B)
[2025-12-03 07:32:37] 2025-12-03 06:31:37,695 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 07:32:37] 2025-12-03 06:31:37,695 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 07:32:37] 2025-12-03 06:31:37,695 | INFO     | update_server=False
[2025-12-03 07:32:37] 2025-12-03 06:31:37,695 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 07:32:37] 2025-12-03 06:31:37,695 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 07:32:37] 2025-12-03 06:31:37,695 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 07:32:37] 2025-12-03 06:31:37,695 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 07:32:37] 2025-12-03 06:31:37,696 | INFO     | aborting loop
[2025-12-03 07:32:37] 2025-12-03 06:31:37,760 | INFO     | job.realtimelogging is not enabled
[2025-12-03 07:32:37] 2025-12-03 06:31:37,772 | INFO     | all data control threads have been joined
[2025-12-03 07:32:37] 2025-12-03 06:31:38,614 | INFO     | all payload control threads have been joined
[2025-12-03 07:32:37] 2025-12-03 06:31:38,700 | INFO     | [job] retrieve thread has finished
[2025-12-03 07:32:37] 2025-12-03 06:31:38,700 | INFO     | [job] job monitor thread has finished
[2025-12-03 07:32:37] 2025-12-03 06:31:38,701 | INFO     | [job] queue monitor thread has finished
[2025-12-03 07:32:37] 2025-12-03 06:31:38,765 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 07:32:37] 2025-12-03 06:31:38,777 | INFO     | [data] control thread has finished
[2025-12-03 07:32:37] 2025-12-03 06:31:39,157 | INFO     | [data] copytool_in thread has finished
[2025-12-03 07:32:37] 2025-12-03 06:31:39,194 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 07:32:37] 2025-12-03 06:31:39,310 | INFO     | all job control threads have been joined
[2025-12-03 07:32:37] 2025-12-03 06:31:39,604 | INFO     | [payload] failed_post thread has finished
[2025-12-03 07:32:37] 2025-12-03 06:31:39,620 | INFO     | [payload] control thread has finished
[2025-12-03 07:32:37] 2025-12-03 06:31:39,700 | INFO     | [data] copytool_out thread has finished
[2025-12-03 07:32:37] 2025-12-03 06:31:39,807 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 07:32:37] 2025-12-03 06:31:40,049 | INFO     | [job] validate thread has finished
[2025-12-03 07:32:37] 2025-12-03 06:31:40,050 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 07:32:37] 2025-12-03 06:31:40,064 | INFO     | [payload] validate_post thread has finished
[2025-12-03 07:32:37] 2025-12-03 06:31:40,081 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 07:32:37] 2025-12-03 06:31:40,315 | INFO     | [job] control thread has finished
[2025-12-03 07:32:37] 2025-12-03 06:31:43,812 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 07:32:37] 2025-12-03 06:32:08,891 | INFO     | PID=32001 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-03 07:32:37] 2025-12-03 06:32:08,891 | INFO     | .. there are 5 such processes running
[2025-12-03 07:32:37] 2025-12-03 06:32:08,891 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 07:32:37] 2025-12-03 06:32:08,891 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 07:32:37] 2025-12-03 06:32:08,891 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 07:32:37] 2025-12-03 06:32:32,324 | INFO     | [monitor] cgroup control has ended
[2025-12-03 07:32:37] 2025-12-03 06:32:32,601 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456062920448)>']
[2025-12-03 07:32:37] 2025-12-03 06:32:33,008 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 07:32:37] 2025-12-03 06:32:33,008 | INFO     | [monitor] control thread has ended
[2025-12-03 07:32:37] 2025-12-03 06:32:37,626 | INFO     | all workflow threads have been joined
[2025-12-03 07:32:37] 2025-12-03 06:32:37,626 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 07:32:37] 2025-12-03 06:32:37,626 | INFO     | traces error code: 0
[2025-12-03 07:32:37] 2025-12-03 06:32:37,626 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 07:32:37] 2025-12-03 06:32:37,680 [wrapper] ==== pilot stdout END ====
[2025-12-03 07:32:37] 2025-12-03 06:32:37,682 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 07:32:37] 2025-12-03 06:32:37,683 [wrapper] pilotpid: 32001
[2025-12-03 07:32:37] 2025-12-03 06:32:37,688 [wrapper] Pilot exit status: 0
[2025-12-03 07:32:37] 2025-12-03 06:32:37,692 [wrapper] pandaids: 6901272536
[2025-12-03 07:32:37] 2025-12-03 06:32:37,715 [wrapper] cleanup supervisor_pilot 23484 32002
[2025-12-03 07:32:37] 2025-12-03 06:32:37,717 [wrapper] Test setup, not cleaning
[2025-12-03 07:32:37] 2025-12-03 06:32:37,718 [wrapper] apfmon messages muted
[2025-12-03 07:32:37] 2025-12-03 06:32:37,719 [wrapper] ==== wrapper stdout END ====
[2025-12-03 07:32:37] 2025-12-03 06:32:37,720 [wrapper] ==== wrapper stderr END ====
[2025-12-03 07:32:37]  *** Error codes and diagnostics ***
[2025-12-03 07:32:37]     "exeErrorCode": 0,
[2025-12-03 07:32:37]     "exeErrorDiag": "",
[2025-12-03 07:32:37]     "pilotErrorCode": 0,
[2025-12-03 07:32:37]     "pilotErrorDiag": "",
[2025-12-03 07:32:37]  *** Listing of results directory ***
[2025-12-03 07:32:37] total 1070192
[2025-12-03 07:32:37] -rw------- 1 mf493845 unix-user    576529 Nov 29 10:19 pilot3.tar.gz
[2025-12-03 07:32:37] -rwx------ 1 mf493845 unix-user     36292 Nov 29 10:22 runpilot2-wrapper.sh
[2025-12-03 07:32:37] -rw------- 1 mf493845 unix-user      5112 Nov 29 10:26 queuedata.json
[2025-12-03 07:32:37] -rw------- 1 mf493845 unix-user       100 Dec  3 02:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 07:32:37] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  3 02:01 run_atlas
[2025-12-03 07:32:37] -rw------- 1 mf493845 unix-user       105 Dec  3 02:01 job.xml
[2025-12-03 07:32:37] -rw-r--r-- 2 mf493845 unix-user 379241750 Dec  3 03:38 EVNT.47531050._000598.pool.root.1
[2025-12-03 07:32:37] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 03:38 start_atlas.sh
[2025-12-03 07:32:37] drwxrwx--x 2 mf493845 unix-user       100 Dec  3 03:38 shared
[2025-12-03 07:32:37] -rw-r--r-- 2 mf493845 unix-user    590123 Dec  3 03:38 input.tar.gz
[2025-12-03 07:32:37] -rw------- 1 mf493845 unix-user      6392 Dec  3 03:38 init_data.xml
[2025-12-03 07:32:37] -rw------- 1 mf493845 unix-user         0 Dec  3 03:38 boinc_setup_complete
[2025-12-03 07:32:37] -rw------- 1 mf493845 unix-user      8192 Dec  3 03:38 boinc_mmap_file
[2025-12-03 07:32:37] -rw------- 1 mf493845 unix-user         0 Dec  3 03:38 boinc_lockfile
[2025-12-03 07:32:37] -rw------- 1 mf493845 unix-user      2881 Dec  3 03:38 pandaJob.out
[2025-12-03 07:32:37] -rw------- 1 mf493845 unix-user    989292 Dec  3 03:38 agis_schedconf.cvmfs.json
[2025-12-03 07:32:37] drwx------ 5 mf493845 unix-user       440 Dec  3 03:38 pilot3
[2025-12-03 07:32:37] -rw------- 1 mf493845 unix-user 705435540 Dec  3 07:31 HITS.47531058._002140.pool.root.1
[2025-12-03 07:32:37] -rw------- 1 mf493845 unix-user      1027 Dec  3 07:31 memory_monitor_summary.json
[2025-12-03 07:32:37] -rw------- 1 mf493845 unix-user   1516240 Dec  3 07:31 agis_ddmendpoints.agis.ALL.json
[2025-12-03 07:32:37] -rw------- 1 mf493845 unix-user   1628357 Dec  3 07:31 log.47531058._002140.job.log.tgz.1
[2025-12-03 07:32:37] -rw------- 1 mf493845 unix-user     27959 Dec  3 07:31 heartbeat.json
[2025-12-03 07:32:37] -rw------- 1 mf493845 unix-user        95 Dec  3 07:32 pilot_heartbeat.json
[2025-12-03 07:32:37] -rw------- 1 mf493845 unix-user      4907 Dec  3 07:32 pilotlog.txt
[2025-12-03 07:32:37] -rw------- 1 mf493845 unix-user   2010422 Dec  3 07:32 log.47531058._002140.job.log.1
[2025-12-03 07:32:37] -rw------- 1 mf493845 unix-user       353 Dec  3 07:32 output.list
[2025-12-03 07:32:37] -rw------- 1 mf493845 unix-user       620 Dec  3 07:32 runtime_log
[2025-12-03 07:32:37] -rw------- 1 mf493845 unix-user   3676160 Dec  3 07:32 result.tar.gz
[2025-12-03 07:32:37] -rw------- 1 mf493845 unix-user       650 Dec  3 07:32 WUBLDmJLWj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmHCPKDmphvP6n.diag
[2025-12-03 07:32:37] -rw------- 1 mf493845 unix-user      9221 Dec  3 07:32 runtime_log.err
[2025-12-03 07:32:37] -rw------- 1 mf493845 unix-user     21779 Dec  3 07:32 stderr.txt
[2025-12-03 07:32:37] HITS file was successfully produced:
[2025-12-03 07:32:37] -rw------- 1 mf493845 unix-user 705435540 Dec  3 07:31 shared/HITS.pool.root.1
[2025-12-03 07:32:37]  *** Contents of shared directory: ***
[2025-12-03 07:32:37] total 1063448
[2025-12-03 07:32:37] -rw-r--r-- 2 mf493845 unix-user 379241750 Dec  3 03:38 ATLAS.root_0
[2025-12-03 07:32:37] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 03:38 start_atlas.sh
[2025-12-03 07:32:37] -rw-r--r-- 2 mf493845 unix-user    590123 Dec  3 03:38 input.tar.gz
[2025-12-03 07:32:37] -rw------- 1 mf493845 unix-user 705435540 Dec  3 07:31 HITS.pool.root.1
[2025-12-03 07:32:37] -rw------- 1 mf493845 unix-user   3676160 Dec  3 07:32 result.tar.gz
07:32:39 (27167): run_atlas exited; CPU time 106502.003049
07:32:39 (27167): called boinc_finish(0)

</stderr_txt>
]]>

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