Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
03:41:16 (4261): wrapper (7.7.26015): starting
03:41:16 (4261): wrapper: running run_atlas (--nthreads 8)
[2025-12-03 03:41:16] Arguments: --nthreads 8
[2025-12-03 03:41:16] Threads: 8
[2025-12-03 03:41:16] Checking for CVMFS
[2025-12-03 03:41:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 03:41:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 03:41:16] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 03:41:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 03:41:16] 2.11.0.0 4400 75023 86648 153577 2 110 3948523 4096001 2802 130560 1 11807689 99.629 9605363 817 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-03 03:41:16] CVMFS is ok
[2025-12-03 03:41:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-03 03:41:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-03 03:41:16] Further information can be found at the LHC@home message board.
[2025-12-03 03:41:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 03:41:16] Checking for apptainer binary...
[2025-12-03 03:41:16] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-03 03:41:16] apptainer is not installed, using version from CVMFS
[2025-12-03 03:41:16] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 03:41:17] WARNING: Environment variable TMPDIR already has value [/tmp/job_10946805/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node344
[2025-12-03 03:41:17] apptainer works
[2025-12-03 03:41:17] Set ATHENA_PROC_NUMBER=8
[2025-12-03 03:41:17] Set ATHENA_CORE_NUMBER=8
[2025-12-03 03:41:17] Starting ATLAS job with PandaID=6895475307
[2025-12-03 03:41:17] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10946805/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 08:11:55]  *** The last 200 lines of the pilot log: ***
[2025-12-03 08:11:55] 2025-12-03 07:10:54,618 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 08:11:55] 2025-12-03 07:10:54,635 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2628.1621718750007
[2025-12-03 08:11:55] 2025-12-03 07:10:54,640 | INFO     | using path: /tmp/job_10946805/atlas/pilot/slots/0/PanDA_Pilot-6895475307/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 08:11:55] 2025-12-03 07:10:54,641 | INFO     | extracted standard info from prmon json
[2025-12-03 08:11:55] 2025-12-03 07:10:54,641 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 08:11:55] 2025-12-03 07:10:54,641 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 08:11:55] 2025-12-03 07:10:54,643 | INFO     | fitting pss+swap vs Time
[2025-12-03 08:11:55] 2025-12-03 07:10:54,644 | INFO     | sum of square deviations: 5770452380.0
[2025-12-03 08:11:55] 2025-12-03 07:10:54,645 | INFO     | sum of deviations: 133107615538.0
[2025-12-03 08:11:55] 2025-12-03 07:10:54,645 | INFO     | mean x: 1764737751.0
[2025-12-03 08:11:55] 2025-12-03 07:10:54,645 | INFO     | mean y: 2899890.3018867923
[2025-12-03 08:11:55] 2025-12-03 07:10:54,645 | INFO     | intersect: -40704486397.062775
[2025-12-03 08:11:55] 2025-12-03 07:10:54,645 | INFO     | chi2: 2.48702509997405
[2025-12-03 08:11:55] 2025-12-03 07:10:54,645 | INFO     | sum of square deviations: 5449944045.0
[2025-12-03 08:11:55] 2025-12-03 07:10:54,646 | INFO     | sum of deviations: 166156032180.0
[2025-12-03 08:11:55] 2025-12-03 07:10:54,646 | INFO     | mean x: 1764737598.5
[2025-12-03 08:11:55] 2025-12-03 07:10:54,646 | INFO     | mean y: 2915429.476923077
[2025-12-03 08:11:55] 2025-12-03 07:10:54,646 | INFO     | intersect: -53799801586.42263
[2025-12-03 08:11:55] 2025-12-03 07:10:54,646 | INFO     | chi2: 1.4391445298521697
[2025-12-03 08:11:55] 2025-12-03 07:10:54,646 | INFO     | current chi2=1.4391445298521697 (change=42.133896040406434 %)
[2025-12-03 08:11:55] 2025-12-03 07:10:54,647 | INFO     | sum of square deviations: 5141528960.0
[2025-12-03 08:11:55] 2025-12-03 07:10:54,647 | INFO     | sum of deviations: 160246925702.0
[2025-12-03 08:11:55] 2025-12-03 07:10:54,647 | INFO     | mean x: 1764737446.0
[2025-12-03 08:11:55] 2025-12-03 07:10:54,647 | INFO     | mean y: 2912507.6784313726
[2025-12-03 08:11:55] 2025-12-03 07:10:54,648 | INFO     | intersect: -54998965842.66723
[2025-12-03 08:11:55] 2025-12-03 07:10:54,648 | INFO     | chi2: 1.4371337300338534
[2025-12-03 08:11:55] 2025-12-03 07:10:54,648 | INFO     | current chi2=1.4371337300338534 (change=0.13972188175727301 %)
[2025-12-03 08:11:55] 2025-12-03 07:10:54,648 | INFO     | right removable region: 254
[2025-12-03 08:11:55] 2025-12-03 07:10:54,648 | INFO     | sum of square deviations: 5449944045.0
[2025-12-03 08:11:55] 2025-12-03 07:10:54,649 | INFO     | sum of deviations: 83505751567.00003
[2025-12-03 08:11:55] 2025-12-03 07:10:54,649 | INFO     | mean x: 1764737903.5
[2025-12-03 08:11:55] 2025-12-03 07:10:54,649 | INFO     | mean y: 2923313.0076923077
[2025-12-03 08:11:55] 2025-12-03 07:10:54,649 | INFO     | intersect: -27036944203.749443
[2025-12-03 08:11:55] 2025-12-03 07:10:54,649 | INFO     | chi2: 1.1073915895452637
[2025-12-03 08:11:55] 2025-12-03 07:10:54,649 | INFO     | current chi2=1.1073915895452637 (change=55.473244336906035 %)
[2025-12-03 08:11:55] 2025-12-03 07:10:54,649 | INFO     | sum of square deviations: 5141528960.0
[2025-12-03 08:11:55] 2025-12-03 07:10:54,650 | INFO     | sum of deviations: 70851323100.0
[2025-12-03 08:11:55] 2025-12-03 07:10:54,650 | INFO     | mean x: 1764738056.0
[2025-12-03 08:11:55] 2025-12-03 07:10:54,650 | INFO     | mean y: 2929564.466666667
[2025-12-03 08:11:55] 2025-12-03 07:10:54,650 | INFO     | intersect: -24315522624.611713
[2025-12-03 08:11:55] 2025-12-03 07:10:54,651 | INFO     | chi2: 1.0856628282970977
[2025-12-03 08:11:55] 2025-12-03 07:10:54,651 | INFO     | current chi2=1.0856628282970977 (change=1.9621569689804732 %)
[2025-12-03 08:11:55] 2025-12-03 07:10:54,651 | INFO     | left removable region: 20
[2025-12-03 08:11:55] 2025-12-03 07:10:54,651 | INFO     | sum of square deviations: 3972995422.5
[2025-12-03 08:11:55] 2025-12-03 07:10:54,652 | INFO     | sum of deviations: 80459706044.5
[2025-12-03 08:11:55] 2025-12-03 07:10:54,652 | INFO     | mean x: 1764738025.5
[2025-12-03 08:11:55] 2025-12-03 07:10:54,652 | INFO     | mean y: 2953746.5854700855
[2025-12-03 08:11:55] 2025-12-03 07:10:54,652 | INFO     | intersect: -35735900109.91714
[2025-12-03 08:11:55] 2025-12-03 07:10:54,652 | INFO     | chi2: 0.015968188945480417
[2025-12-03 08:11:55] 2025-12-03 07:10:54,652 | INFO     | current memory leak: 20.25 B/s (using 234 data points, chi2=0.02)
[2025-12-03 08:11:55] 2025-12-03 07:10:54,652 | INFO     | could have reported an average CPU frequency of 2905 MHz (12 samples)
[2025-12-03 08:11:55] 2025-12-03 07:10:54,652 | INFO     | ..............................
[2025-12-03 08:11:55] 2025-12-03 07:10:54,652 | INFO     | . Timing measurements:
[2025-12-03 08:11:55] 2025-12-03 07:10:54,652 | INFO     | . get job = 0 s
[2025-12-03 08:11:55] 2025-12-03 07:10:54,652 | INFO     | . initial setup = 1 s
[2025-12-03 08:11:55] 2025-12-03 07:10:54,652 | INFO     | . payload setup = 2 s
[2025-12-03 08:11:55] 2025-12-03 07:10:54,652 | INFO     | . stage-in = 0 s
[2025-12-03 08:11:55] 2025-12-03 07:10:54,652 | INFO     | . payload execution = 16150 s
[2025-12-03 08:11:55] 2025-12-03 07:10:54,653 | INFO     | . stage-out = 1 s
[2025-12-03 08:11:55] 2025-12-03 07:10:54,653 | INFO     | . log creation = 0 s
[2025-12-03 08:11:55] 2025-12-03 07:10:54,653 | INFO     | ..............................
[2025-12-03 08:11:55] 2025-12-03 07:10:54,701 | INFO     | 
[2025-12-03 08:11:55] 2025-12-03 07:10:54,702 | INFO     | job summary report
[2025-12-03 08:11:55] 2025-12-03 07:10:54,702 | INFO     | --------------------------------------------------
[2025-12-03 08:11:55] 2025-12-03 07:10:54,702 | INFO     | PanDA job id: 6895475307
[2025-12-03 08:11:55] 2025-12-03 07:10:54,702 | INFO     | task id: 47556149
[2025-12-03 08:11:55] 2025-12-03 07:10:54,702 | INFO     | errors: (none)
[2025-12-03 08:11:55] 2025-12-03 07:10:54,702 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 08:11:55] 2025-12-03 07:10:54,702 | INFO     | pilot state: finished 
[2025-12-03 08:11:55] 2025-12-03 07:10:54,702 | INFO     | transexitcode: 0
[2025-12-03 08:11:55] 2025-12-03 07:10:54,702 | INFO     | exeerrorcode: 0
[2025-12-03 08:11:55] 2025-12-03 07:10:54,702 | INFO     | exeerrordiag: 
[2025-12-03 08:11:55] 2025-12-03 07:10:54,702 | INFO     | exitcode: 0
[2025-12-03 08:11:55] 2025-12-03 07:10:54,702 | INFO     | exitmsg: OK
[2025-12-03 08:11:55] 2025-12-03 07:10:54,702 | INFO     | cpuconsumptiontime: 124099 s
[2025-12-03 08:11:55] 2025-12-03 07:10:54,702 | INFO     | nevents: 1000
[2025-12-03 08:11:55] 2025-12-03 07:10:54,702 | INFO     | neventsw: 0
[2025-12-03 08:11:55] 2025-12-03 07:10:54,702 | INFO     | pid: 17187
[2025-12-03 08:11:55] 2025-12-03 07:10:54,702 | INFO     | pgrp: 17187
[2025-12-03 08:11:55] 2025-12-03 07:10:54,702 | INFO     | corecount: 8
[2025-12-03 08:11:55] 2025-12-03 07:10:54,702 | INFO     | event service: False
[2025-12-03 08:11:55] 2025-12-03 07:10:54,702 | INFO     | sizes: {0: 2284441, 2: 2284703, 11: 2284731, 16156: 2317176, 16157: 2326256, 16160: 2326446}
[2025-12-03 08:11:55] 2025-12-03 07:10:54,702 | INFO     | --------------------------------------------------
[2025-12-03 08:11:55] 2025-12-03 07:10:54,702 | INFO     | 
[2025-12-03 08:11:55] 2025-12-03 07:10:54,702 | INFO     | executing command: ls -lF /tmp/job_10946805/atlas/pilot/slots/0
[2025-12-03 08:11:55] 2025-12-03 07:10:54,711 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 08:11:55] 2025-12-03 07:10:54,711 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 08:11:55] 2025-12-03 07:10:54,711 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 08:11:55] 2025-12-03 07:10:54,711 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 08:11:55] 2025-12-03 07:10:54,711 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 08:11:55] 2025-12-03 07:10:54,711 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 08:11:55] 2025-12-03 07:10:54,711 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 08:11:55] 2025-12-03 07:10:54,711 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 08:11:55] 2025-12-03 07:10:54,711 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 08:11:55] 2025-12-03 07:10:54,711 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 08:11:55] 2025-12-03 07:10:54,711 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 08:11:55] 2025-12-03 07:10:54,711 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 08:11:55] 2025-12-03 07:10:54,711 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 08:11:55] 2025-12-03 07:10:54,711 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 08:11:55] 2025-12-03 07:10:54,711 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 08:11:55] 2025-12-03 07:10:54,711 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 08:11:55] 2025-12-03 07:10:54,711 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 08:11:55] 2025-12-03 07:10:54,711 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 08:11:55] 2025-12-03 07:10:54,711 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 08:11:55] 2025-12-03 07:10:54,712 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 08:11:55] 2025-12-03 07:10:54,712 | INFO     | job 6895475307 has completed (purged errors)
[2025-12-03 08:11:55] 2025-12-03 07:10:54,712 | INFO     | overall cleanup function is called
[2025-12-03 08:11:55] 2025-12-03 07:10:55,719 | INFO     | --- collectZombieJob: --- 10, [17187]
[2025-12-03 08:11:55] 2025-12-03 07:10:55,719 | INFO     | zombie collector waiting for pid 17187
[2025-12-03 08:11:55] 2025-12-03 07:10:55,719 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 08:11:55] 2025-12-03 07:10:55,719 | INFO     | collected zombie processes
[2025-12-03 08:11:55] 2025-12-03 07:10:55,719 | INFO     | will attempt to kill all subprocesses of pid=17187
[2025-12-03 08:11:55] 2025-12-03 07:10:55,818 | INFO     | process IDs to be killed: [17187] (in reverse order)
[2025-12-03 08:11:55] 2025-12-03 07:10:55,852 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 08:11:55] 2025-12-03 07:10:55,852 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 08:11:55] 2025-12-03 07:10:55,857 | INFO     | did not find any defunct processes belonging to 17187
[2025-12-03 08:11:55] 2025-12-03 07:10:55,860 | INFO     | did not find any defunct processes belonging to 17187
[2025-12-03 08:11:55] 2025-12-03 07:10:55,860 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 08:11:55] 2025-12-03 07:10:55,861 | INFO     | ready for new job
[2025-12-03 08:11:55] 2025-12-03 07:10:55,861 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 08:11:55] 2025-12-03 07:10:55,861 | INFO     | ***************************************
[2025-12-03 08:11:55] 2025-12-03 07:10:55,862 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 08:11:55] 2025-12-03 07:10:55,862 | INFO     | ***************************************
[2025-12-03 08:11:55] 2025-12-03 07:10:55,862 | INFO     | 
[2025-12-03 08:11:55] 2025-12-03 07:10:55,876 | INFO     | architecture information:
[2025-12-03 08:11:55] 2025-12-03 07:10:55,876 | INFO     | executing command: cat /etc/os-release
[2025-12-03 08:11:55] 2025-12-03 07:10:55,883 | INFO     | cat /etc/os-release:
[2025-12-03 08:11:55] NAME="CentOS Linux"
[2025-12-03 08:11:55] VERSION="7 (Core)"
[2025-12-03 08:11:55] ID="centos"
[2025-12-03 08:11:55] ID_LIKE="rhel fedora"
[2025-12-03 08:11:55] VERSION_ID="7"
[2025-12-03 08:11:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 08:11:55] ANSI_COLOR="0;31"
[2025-12-03 08:11:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 08:11:55] HOME_URL="https://www.centos.org/"
[2025-12-03 08:11:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 08:11:55] 
[2025-12-03 08:11:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 08:11:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 08:11:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 08:11:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 08:11:55] 
[2025-12-03 08:11:55] 2025-12-03 07:10:55,883 | INFO     | ***************************************
[2025-12-03 08:11:55] 2025-12-03 07:10:56,386 | INFO     | executing command: df -mP /tmp/job_10946805/atlas/pilot/slots/0
[2025-12-03 08:11:55] 2025-12-03 07:10:56,392 | INFO     | sufficient remaining disk space (222313840640 B)
[2025-12-03 08:11:55] 2025-12-03 07:10:56,393 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 08:11:55] 2025-12-03 07:10:56,393 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 08:11:55] 2025-12-03 07:10:56,393 | INFO     | update_server=False
[2025-12-03 08:11:55] 2025-12-03 07:10:56,393 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 08:11:55] 2025-12-03 07:10:56,393 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 08:11:55] 2025-12-03 07:10:56,457 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-03 08:11:55] 2025-12-03 07:10:56,457 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-03 08:11:55] 2025-12-03 07:10:56,457 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 08:11:55] 2025-12-03 07:10:56,457 | INFO     | will abort loop
[2025-12-03 08:11:55] 2025-12-03 07:10:56,771 | INFO     | all data control threads have been joined
[2025-12-03 08:11:55] 2025-12-03 07:10:57,398 | INFO     | [job] retrieve thread has finished
[2025-12-03 08:11:55] 2025-12-03 07:10:57,398 | INFO     | [job] queue monitor thread has finished
[2025-12-03 08:11:55] 2025-12-03 07:10:57,418 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 08:11:55] 2025-12-03 07:10:57,463 | INFO     | [job] job monitor thread has finished
[2025-12-03 08:11:55] 2025-12-03 07:10:57,525 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 08:11:55] 2025-12-03 07:10:57,546 | INFO     | all payload control threads have been joined
[2025-12-03 08:11:55] 2025-12-03 07:10:57,712 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 08:11:55] 2025-12-03 07:10:57,776 | INFO     | [data] control thread has finished
[2025-12-03 08:11:55] 2025-12-03 07:10:57,824 | INFO     | all job control threads have been joined
[2025-12-03 08:11:55] 2025-12-03 07:10:57,852 | INFO     | [payload] failed_post thread has finished
[2025-12-03 08:11:55] 2025-12-03 07:10:57,980 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 08:11:55] 2025-12-03 07:10:58,068 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 08:11:55] 2025-12-03 07:10:58,162 | INFO     | [payload] validate_post thread has finished
[2025-12-03 08:11:55] 2025-12-03 07:10:58,302 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 08:11:55] 2025-12-03 07:10:58,469 | INFO     | [data] copytool_in thread has finished
[2025-12-03 08:11:55] 2025-12-03 07:10:58,551 | INFO     | [payload] control thread has finished
[2025-12-03 08:11:55] 2025-12-03 07:10:58,585 | INFO     | [job] validate thread has finished
[2025-12-03 08:11:55] 2025-12-03 07:10:58,829 | INFO     | [job] control thread has finished
[2025-12-03 08:11:55] 2025-12-03 07:10:59,530 | INFO     | [data] copytool_out thread has finished
[2025-12-03 08:11:55] 2025-12-03 07:11:02,073 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 08:11:55] 2025-12-03 07:11:25,715 [wrapper] supervise_pilot (15 min periods counter: 19)
[2025-12-03 08:11:55] 2025-12-03 07:11:27,505 | INFO     | PID=8946 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-03 08:11:55] 2025-12-03 07:11:27,505 | INFO     | .. there are 3 such processes running
[2025-12-03 08:11:55] 2025-12-03 07:11:27,505 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 08:11:55] 2025-12-03 07:11:27,505 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 08:11:55] 2025-12-03 07:11:27,505 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 08:11:55] 2025-12-03 07:11:48,629 | INFO     | [monitor] cgroup control has ended
[2025-12-03 08:11:55] 2025-12-03 07:11:49,928 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456065021696)>']
[2025-12-03 08:11:55] 2025-12-03 07:11:50,620 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 08:11:55] 2025-12-03 07:11:50,620 | INFO     | [monitor] control thread has ended
[2025-12-03 08:11:55] 2025-12-03 07:11:54,953 | INFO     | all workflow threads have been joined
[2025-12-03 08:11:55] 2025-12-03 07:11:54,953 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 08:11:55] 2025-12-03 07:11:54,953 | INFO     | traces error code: 0
[2025-12-03 08:11:55] 2025-12-03 07:11:54,953 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 08:11:55] 2025-12-03 07:11:55,004 [wrapper] ==== pilot stdout END ====
[2025-12-03 08:11:55] 2025-12-03 07:11:55,006 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 08:11:55] 2025-12-03 07:11:55,007 [wrapper] pilotpid: 8946
[2025-12-03 08:11:55] 2025-12-03 07:11:55,009 [wrapper] Pilot exit status: 0
[2025-12-03 08:11:55] 2025-12-03 07:11:55,014 [wrapper] pandaids: 6895475307
[2025-12-03 08:11:55] 2025-12-03 07:11:55,038 [wrapper] cleanup supervisor_pilot 25494 8947
[2025-12-03 08:11:55] 2025-12-03 07:11:55,039 [wrapper] Test setup, not cleaning
[2025-12-03 08:11:55] 2025-12-03 07:11:55,040 [wrapper] apfmon messages muted
[2025-12-03 08:11:55] 2025-12-03 07:11:55,042 [wrapper] ==== wrapper stdout END ====
[2025-12-03 08:11:55] 2025-12-03 07:11:55,043 [wrapper] ==== wrapper stderr END ====
[2025-12-03 08:11:55]  *** Error codes and diagnostics ***
[2025-12-03 08:11:55]     "exeErrorCode": 0,
[2025-12-03 08:11:55]     "exeErrorDiag": "",
[2025-12-03 08:11:55]     "pilotErrorCode": 0,
[2025-12-03 08:11:55]     "pilotErrorDiag": "",
[2025-12-03 08:11:55]  *** Listing of results directory ***
[2025-12-03 08:11:55] total 1301668
[2025-12-03 08:11:55] -rw------- 1 mf493845 unix-user      5112 Nov 24 10:01 queuedata.json
[2025-12-03 08:11:55] -rw------- 1 mf493845 unix-user    576529 Nov 24 10:01 pilot3.tar.gz
[2025-12-03 08:11:55] -rwx------ 1 mf493845 unix-user     36292 Nov 24 10:02 runpilot2-wrapper.sh
[2025-12-03 08:11:55] -rw------- 1 mf493845 unix-user       100 Dec  3 01:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 08:11:55] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  3 01:57 run_atlas
[2025-12-03 08:11:55] -rw------- 1 mf493845 unix-user       105 Dec  3 01:57 job.xml
[2025-12-03 08:11:55] -rw-r--r-- 2 mf493845 unix-user 407655361 Dec  3 03:41 EVNT.47483658._001288.pool.root.1
[2025-12-03 08:11:55] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 03:41 start_atlas.sh
[2025-12-03 08:11:55] drwxrwx--x 2 mf493845 unix-user       100 Dec  3 03:41 shared
[2025-12-03 08:11:55] -rw-r--r-- 2 mf493845 unix-user    590105 Dec  3 03:41 input.tar.gz
[2025-12-03 08:11:55] -rw------- 1 mf493845 unix-user      6391 Dec  3 03:41 init_data.xml
[2025-12-03 08:11:55] -rw------- 1 mf493845 unix-user         0 Dec  3 03:41 boinc_setup_complete
[2025-12-03 08:11:55] -rw------- 1 mf493845 unix-user      8192 Dec  3 03:41 boinc_mmap_file
[2025-12-03 08:11:55] -rw------- 1 mf493845 unix-user         0 Dec  3 03:41 boinc_lockfile
[2025-12-03 08:11:55] -rw------- 1 mf493845 unix-user      2786 Dec  3 03:41 pandaJob.out
[2025-12-03 08:11:55] -rw------- 1 mf493845 unix-user    989292 Dec  3 03:41 agis_schedconf.cvmfs.json
[2025-12-03 08:11:55] drwx------ 5 mf493845 unix-user       440 Dec  3 03:41 pilot3
[2025-12-03 08:11:55] -rw------- 1 mf493845 unix-user 913598863 Dec  3 08:10 HITS.47556149._002746.pool.root.1
[2025-12-03 08:11:55] -rw------- 1 mf493845 unix-user        95 Dec  3 08:10 pilot_heartbeat.json
[2025-12-03 08:11:55] -rw------- 1 mf493845 unix-user      1030 Dec  3 08:10 memory_monitor_summary.json
[2025-12-03 08:11:55] -rw------- 1 mf493845 unix-user   1516240 Dec  3 08:10 agis_ddmendpoints.agis.ALL.json
[2025-12-03 08:11:55] -rw------- 1 mf493845 unix-user   1561649 Dec  3 08:10 log.47556149._002746.job.log.tgz.1
[2025-12-03 08:11:55] -rw------- 1 mf493845 unix-user      8587 Dec  3 08:10 heartbeat.json
[2025-12-03 08:11:55] -rw------- 1 mf493845 unix-user      5020 Dec  3 08:11 pilotlog.txt
[2025-12-03 08:11:55] -rw------- 1 mf493845 unix-user   2320269 Dec  3 08:11 log.47556149._002746.job.log.1
[2025-12-03 08:11:55] -rw------- 1 mf493845 unix-user       353 Dec  3 08:11 output.list
[2025-12-03 08:11:55] -rw------- 1 mf493845 unix-user       620 Dec  3 08:11 runtime_log
[2025-12-03 08:11:55] -rw------- 1 mf493845 unix-user   3901440 Dec  3 08:11 result.tar.gz
[2025-12-03 08:11:55] -rw------- 1 mf493845 unix-user      9221 Dec  3 08:11 runtime_log.err
[2025-12-03 08:11:55] -rw------- 1 mf493845 unix-user       650 Dec  3 08:11 dtPMDmldhh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmOZLKDmIsZK4m.diag
[2025-12-03 08:11:55] -rw------- 1 mf493845 unix-user     21641 Dec  3 08:11 stderr.txt
[2025-12-03 08:11:55] HITS file was successfully produced:
[2025-12-03 08:11:55] -rw------- 1 mf493845 unix-user 913598863 Dec  3 08:10 shared/HITS.pool.root.1
[2025-12-03 08:11:55]  *** Contents of shared directory: ***
[2025-12-03 08:11:55] total 1294700
[2025-12-03 08:11:55] -rw-r--r-- 2 mf493845 unix-user 407655361 Dec  3 03:41 ATLAS.root_0
[2025-12-03 08:11:55] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 03:41 start_atlas.sh
[2025-12-03 08:11:55] -rw-r--r-- 2 mf493845 unix-user    590105 Dec  3 03:41 input.tar.gz
[2025-12-03 08:11:55] -rw------- 1 mf493845 unix-user 913598863 Dec  3 08:10 HITS.pool.root.1
[2025-12-03 08:11:55] -rw------- 1 mf493845 unix-user   3901440 Dec  3 08:11 result.tar.gz
08:11:56 (4261): run_atlas exited; CPU time 124300.427967
08:11:56 (4261): called boinc_finish(0)

</stderr_txt>
]]>

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