Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
03:42:16 (10997): wrapper (7.7.26015): starting
03:42:16 (10997): wrapper: running run_atlas (--nthreads 8)
[2025-12-03 03:42:16] Arguments: --nthreads 8
[2025-12-03 03:42:16] Threads: 8
[2025-12-03 03:42:16] Checking for CVMFS
[2025-12-03 03:42:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 03:42:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 03:42:16] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 03:42:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 03:42:16] 2.11.0.0 20755 75152 96364 153577 3 108 2626102 4096000 2322 130560 1 6333950 99.526 6174598 563 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-03 03:42:16] CVMFS is ok
[2025-12-03 03:42:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-03 03:42:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-03 03:42:16] Further information can be found at the LHC@home message board.
[2025-12-03 03:42:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 03:42:16] Checking for apptainer binary...
[2025-12-03 03:42:16] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-03 03:42:16] apptainer is not installed, using version from CVMFS
[2025-12-03 03:42:16] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 03:42:16] WARNING: Environment variable TMPDIR already has value [/tmp/job_10946819/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node357
[2025-12-03 03:42:16] apptainer works
[2025-12-03 03:42:16] Set ATHENA_PROC_NUMBER=8
[2025-12-03 03:42:16] Set ATHENA_CORE_NUMBER=8
[2025-12-03 03:42:16] Starting ATLAS job with PandaID=6895475311
[2025-12-03 03:42:16] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10946819/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 07:59:53]  *** The last 200 lines of the pilot log: ***
[2025-12-03 07:59:53] 2025-12-03 06:58:48,875 | INFO     | mean y: 2892674.75
[2025-12-03 07:59:53] 2025-12-03 06:58:48,876 | INFO     | intersect: -44487420724.784744
[2025-12-03 07:59:53] 2025-12-03 06:58:48,876 | INFO     | chi2: 3.3633599076957816
[2025-12-03 07:59:53] 2025-12-03 06:58:48,876 | INFO     | sum of square deviations: 4672638308.0
[2025-12-03 07:59:53] 2025-12-03 06:58:48,877 | INFO     | sum of deviations: 164471382186.99997
[2025-12-03 07:59:53] 2025-12-03 06:58:48,877 | INFO     | mean x: 1764737262.0
[2025-12-03 07:59:53] 2025-12-03 06:58:48,877 | INFO     | mean y: 2913204.809716599
[2025-12-03 07:59:53] 2025-12-03 06:58:48,877 | INFO     | intersect: -62113766398.04088
[2025-12-03 07:59:53] 2025-12-03 06:58:48,877 | INFO     | chi2: 2.075660092287993
[2025-12-03 07:59:53] 2025-12-03 06:58:48,877 | INFO     | current chi2=2.075660092287993 (change=38.286114205660034 %)
[2025-12-03 07:59:53] 2025-12-03 06:58:48,877 | INFO     | sum of square deviations: 4394577280.5
[2025-12-03 07:59:53] 2025-12-03 06:58:48,878 | INFO     | sum of deviations: 158589766029.99997
[2025-12-03 07:59:53] 2025-12-03 06:58:48,878 | INFO     | mean x: 1764737109.5
[2025-12-03 07:59:53] 2025-12-03 06:58:48,878 | INFO     | mean y: 2909979.2975206613
[2025-12-03 07:59:53] 2025-12-03 06:58:48,878 | INFO     | intersect: -63682224548.1856
[2025-12-03 07:59:53] 2025-12-03 06:58:48,878 | INFO     | chi2: 2.074133815097229
[2025-12-03 07:59:53] 2025-12-03 06:58:48,878 | INFO     | current chi2=2.074133815097229 (change=0.0735321354606478 %)
[2025-12-03 07:59:53] 2025-12-03 06:58:48,878 | INFO     | right removable region: 241
[2025-12-03 07:59:53] 2025-12-03 06:58:48,879 | INFO     | sum of square deviations: 4672638308.0
[2025-12-03 07:59:53] 2025-12-03 06:58:48,879 | INFO     | sum of deviations: 63679359608.00001
[2025-12-03 07:59:53] 2025-12-03 06:58:48,880 | INFO     | mean x: 1764737567.0
[2025-12-03 07:59:53] 2025-12-03 06:58:48,880 | INFO     | mean y: 2924815.068825911
[2025-12-03 07:59:53] 2025-12-03 06:58:48,880 | INFO     | intersect: -24047162252.517662
[2025-12-03 07:59:53] 2025-12-03 06:58:48,880 | INFO     | chi2: 1.3558848275199396
[2025-12-03 07:59:53] 2025-12-03 06:58:48,880 | INFO     | current chi2=1.3558848275199396 (change=59.68659719057994 %)
[2025-12-03 07:59:53] 2025-12-03 06:58:48,880 | INFO     | sum of square deviations: 4394577280.5
[2025-12-03 07:59:53] 2025-12-03 06:58:48,881 | INFO     | sum of deviations: 52113204263.99997
[2025-12-03 07:59:53] 2025-12-03 06:58:48,881 | INFO     | mean x: 1764737719.5
[2025-12-03 07:59:53] 2025-12-03 06:58:48,881 | INFO     | mean y: 2931150.041322314
[2025-12-03 07:59:53] 2025-12-03 06:58:48,881 | INFO     | intersect: -20924255102.153885
[2025-12-03 07:59:53] 2025-12-03 06:58:48,881 | INFO     | chi2: 1.334032992674436
[2025-12-03 07:59:53] 2025-12-03 06:58:48,881 | INFO     | current chi2=1.334032992674436 (change=1.6116291297007015 %)
[2025-12-03 07:59:53] 2025-12-03 06:58:48,881 | INFO     | left removable region: 20
[2025-12-03 07:59:53] 2025-12-03 06:58:48,881 | INFO     | sum of square deviations: 3346927870.0
[2025-12-03 07:59:53] 2025-12-03 06:58:48,882 | INFO     | sum of deviations: 70264444540.0
[2025-12-03 07:59:53] 2025-12-03 06:58:48,882 | INFO     | mean x: 1764737689.0
[2025-12-03 07:59:53] 2025-12-03 06:58:48,882 | INFO     | mean y: 2960661.773755656
[2025-12-03 07:59:53] 2025-12-03 06:58:48,882 | INFO     | intersect: -37045436642.464615
[2025-12-03 07:59:53] 2025-12-03 06:58:48,882 | INFO     | chi2: 0.013584641560224094
[2025-12-03 07:59:53] 2025-12-03 06:58:48,882 | INFO     | current memory leak: 20.99 B/s (using 221 data points, chi2=0.01)
[2025-12-03 07:59:53] 2025-12-03 06:58:48,883 | INFO     | could have reported an average CPU frequency of 2871 MHz (12 samples)
[2025-12-03 07:59:53] 2025-12-03 06:58:48,883 | INFO     | ..............................
[2025-12-03 07:59:53] 2025-12-03 06:58:48,883 | INFO     | . Timing measurements:
[2025-12-03 07:59:53] 2025-12-03 06:58:48,883 | INFO     | . get job = 0 s
[2025-12-03 07:59:53] 2025-12-03 06:58:48,883 | INFO     | . initial setup = 1 s
[2025-12-03 07:59:53] 2025-12-03 06:58:48,883 | INFO     | . payload setup = 2 s
[2025-12-03 07:59:53] 2025-12-03 06:58:48,883 | INFO     | . stage-in = 0 s
[2025-12-03 07:59:53] 2025-12-03 06:58:48,883 | INFO     | . payload execution = 15365 s
[2025-12-03 07:59:53] 2025-12-03 06:58:48,883 | INFO     | . stage-out = 1 s
[2025-12-03 07:59:53] 2025-12-03 06:58:48,883 | INFO     | . log creation = 0 s
[2025-12-03 07:59:53] 2025-12-03 06:58:48,883 | INFO     | ..............................
[2025-12-03 07:59:53] 2025-12-03 06:58:49,090 | INFO     | 
[2025-12-03 07:59:53] 2025-12-03 06:58:49,090 | INFO     | job summary report
[2025-12-03 07:59:53] 2025-12-03 06:58:49,090 | INFO     | --------------------------------------------------
[2025-12-03 07:59:53] 2025-12-03 06:58:49,090 | INFO     | PanDA job id: 6895475311
[2025-12-03 07:59:53] 2025-12-03 06:58:49,090 | INFO     | task id: 47556149
[2025-12-03 07:59:53] 2025-12-03 06:58:49,090 | INFO     | errors: (none)
[2025-12-03 07:59:53] 2025-12-03 06:58:49,090 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 07:59:53] 2025-12-03 06:58:49,090 | INFO     | pilot state: finished 
[2025-12-03 07:59:53] 2025-12-03 06:58:49,090 | INFO     | transexitcode: 0
[2025-12-03 07:59:53] 2025-12-03 06:58:49,090 | INFO     | exeerrorcode: 0
[2025-12-03 07:59:53] 2025-12-03 06:58:49,090 | INFO     | exeerrordiag: 
[2025-12-03 07:59:53] 2025-12-03 06:58:49,090 | INFO     | exitcode: 0
[2025-12-03 07:59:53] 2025-12-03 06:58:49,090 | INFO     | exitmsg: OK
[2025-12-03 07:59:53] 2025-12-03 06:58:49,090 | INFO     | cpuconsumptiontime: 117607 s
[2025-12-03 07:59:53] 2025-12-03 06:58:49,090 | INFO     | nevents: 1000
[2025-12-03 07:59:53] 2025-12-03 06:58:49,090 | INFO     | neventsw: 0
[2025-12-03 07:59:53] 2025-12-03 06:58:49,090 | INFO     | pid: 21581
[2025-12-03 07:59:53] 2025-12-03 06:58:49,090 | INFO     | pgrp: 21581
[2025-12-03 07:59:53] 2025-12-03 06:58:49,090 | INFO     | corecount: 8
[2025-12-03 07:59:53] 2025-12-03 06:58:49,090 | INFO     | event service: False
[2025-12-03 07:59:53] 2025-12-03 06:58:49,090 | INFO     | sizes: {0: 2284441, 1: 2284441, 2: 2284731, 11: 2284759, 15371: 2316868, 15373: 2326076, 15375: 2326266}
[2025-12-03 07:59:53] 2025-12-03 06:58:49,090 | INFO     | --------------------------------------------------
[2025-12-03 07:59:53] 2025-12-03 06:58:49,090 | INFO     | 
[2025-12-03 07:59:53] 2025-12-03 06:58:49,091 | INFO     | executing command: ls -lF /tmp/job_10946819/atlas/pilot/slots/0
[2025-12-03 07:59:53] 2025-12-03 06:58:49,100 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 07:59:53] 2025-12-03 06:58:49,100 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 07:59:53] 2025-12-03 06:58:49,100 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 07:59:53] 2025-12-03 06:58:49,100 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 07:59:53] 2025-12-03 06:58:49,100 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 07:59:53] 2025-12-03 06:58:49,100 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 07:59:53] 2025-12-03 06:58:49,100 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 07:59:53] 2025-12-03 06:58:49,100 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 07:59:53] 2025-12-03 06:58:49,100 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 07:59:53] 2025-12-03 06:58:49,100 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 07:59:53] 2025-12-03 06:58:49,100 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 07:59:53] 2025-12-03 06:58:49,100 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 07:59:53] 2025-12-03 06:58:49,100 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 07:59:53] 2025-12-03 06:58:49,100 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 07:59:53] 2025-12-03 06:58:49,100 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 07:59:53] 2025-12-03 06:58:49,100 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 07:59:53] 2025-12-03 06:58:49,100 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 07:59:53] 2025-12-03 06:58:49,100 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 07:59:53] 2025-12-03 06:58:49,100 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 07:59:53] 2025-12-03 06:58:49,100 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 07:59:53] 2025-12-03 06:58:49,101 | INFO     | job 6895475311 has completed (purged errors)
[2025-12-03 07:59:53] 2025-12-03 06:58:49,101 | INFO     | overall cleanup function is called
[2025-12-03 07:59:53] 2025-12-03 06:58:50,108 | INFO     | --- collectZombieJob: --- 10, [21581]
[2025-12-03 07:59:53] 2025-12-03 06:58:50,108 | INFO     | zombie collector waiting for pid 21581
[2025-12-03 07:59:53] 2025-12-03 06:58:50,108 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 07:59:53] 2025-12-03 06:58:50,108 | INFO     | collected zombie processes
[2025-12-03 07:59:53] 2025-12-03 06:58:50,108 | INFO     | will attempt to kill all subprocesses of pid=21581
[2025-12-03 07:59:53] 2025-12-03 06:58:50,214 | INFO     | process IDs to be killed: [21581] (in reverse order)
[2025-12-03 07:59:53] 2025-12-03 06:58:50,253 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 07:59:53] 2025-12-03 06:58:50,253 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 07:59:53] 2025-12-03 06:58:50,259 | INFO     | did not find any defunct processes belonging to 21581
[2025-12-03 07:59:53] 2025-12-03 06:58:50,262 | INFO     | did not find any defunct processes belonging to 21581
[2025-12-03 07:59:53] 2025-12-03 06:58:50,263 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 07:59:53] 2025-12-03 06:58:50,263 | INFO     | ready for new job
[2025-12-03 07:59:53] 2025-12-03 06:58:50,263 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 07:59:53] 2025-12-03 06:58:50,264 | INFO     | ***************************************
[2025-12-03 07:59:53] 2025-12-03 06:58:50,264 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 07:59:53] 2025-12-03 06:58:50,264 | INFO     | ***************************************
[2025-12-03 07:59:53] 2025-12-03 06:58:50,264 | INFO     | 
[2025-12-03 07:59:53] 2025-12-03 06:58:50,277 | INFO     | architecture information:
[2025-12-03 07:59:53] 2025-12-03 06:58:50,277 | INFO     | executing command: cat /etc/os-release
[2025-12-03 07:59:53] 2025-12-03 06:58:50,284 | INFO     | cat /etc/os-release:
[2025-12-03 07:59:53] NAME="CentOS Linux"
[2025-12-03 07:59:53] VERSION="7 (Core)"
[2025-12-03 07:59:53] ID="centos"
[2025-12-03 07:59:53] ID_LIKE="rhel fedora"
[2025-12-03 07:59:53] VERSION_ID="7"
[2025-12-03 07:59:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 07:59:53] ANSI_COLOR="0;31"
[2025-12-03 07:59:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 07:59:53] HOME_URL="https://www.centos.org/"
[2025-12-03 07:59:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 07:59:53] 
[2025-12-03 07:59:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 07:59:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 07:59:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 07:59:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 07:59:53] 
[2025-12-03 07:59:53] 2025-12-03 06:58:50,284 | INFO     | ***************************************
[2025-12-03 07:59:53] 2025-12-03 06:58:50,787 | INFO     | executing command: df -mP /tmp/job_10946819/atlas/pilot/slots/0
[2025-12-03 07:59:53] 2025-12-03 06:58:50,794 | INFO     | sufficient remaining disk space (221742366720 B)
[2025-12-03 07:59:53] 2025-12-03 06:58:50,794 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 07:59:53] 2025-12-03 06:58:50,794 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 07:59:53] 2025-12-03 06:58:50,794 | INFO     | update_server=False
[2025-12-03 07:59:53] 2025-12-03 06:58:50,794 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 07:59:53] 2025-12-03 06:58:50,794 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 07:59:53] 2025-12-03 06:58:50,794 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 07:59:53] 2025-12-03 06:58:51,360 | INFO     | all job control threads have been joined
[2025-12-03 07:59:53] 2025-12-03 06:58:51,487 | INFO     | all data control threads have been joined
[2025-12-03 07:59:53] 2025-12-03 06:58:51,799 | INFO     | [job] retrieve thread has finished
[2025-12-03 07:59:53] 2025-12-03 06:58:51,800 | INFO     | [job] queue monitor thread has finished
[2025-12-03 07:59:53] 2025-12-03 06:58:51,825 | WARNING  | process 21581 can no longer be monitored (due to stat problems) - aborting
[2025-12-03 07:59:53] 2025-12-03 06:58:51,843 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 07:59:53] 2025-12-03 06:58:51,906 | INFO     | using path: /tmp/job_10946819/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 07:59:53] 2025-12-03 06:58:51,906 | INFO     | using path: /tmp/job_10946819/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 07:59:53] 2025-12-03 06:58:51,906 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-12-03 07:59:53] 2025-12-03 06:58:51,906 | WARNING  | maxPSS not found in memory monitor output
[2025-12-03 07:59:53] 2025-12-03 06:58:51,906 | INFO     | skipping file size check of payload stdout file (/tmp/job_10946819/atlas/pilot/slots/0/PanDA_Pilot-6895475311/payload.stdout) since it has not been created yet
[2025-12-03 07:59:53] 2025-12-03 06:58:51,907 | INFO     | executing command: df -mP /tmp/job_10946819/atlas/pilot/slots/0
[2025-12-03 07:59:53] 2025-12-03 06:58:51,914 | INFO     | sufficient remaining disk space (221742366720 B)
[2025-12-03 07:59:53] 2025-12-03 06:58:51,914 | WARNING  | skipping size check of workdir since it has not been created yet
[2025-12-03 07:59:53] 2025-12-03 06:58:51,914 | INFO     | output file size check: skipping output file /tmp/job_10946819/atlas/pilot/slots/0/PanDA_Pilot-6895475311/HITS.47556149._002750.pool.root.1 since it does not exist
[2025-12-03 07:59:53] 2025-12-03 06:58:52,020 | INFO     | number of running child processes to parent process 21581: 1
[2025-12-03 07:59:53] 2025-12-03 06:58:52,020 | INFO     | maximum number of monitored processes: 16
[2025-12-03 07:59:53] 2025-12-03 06:58:52,020 | INFO     | aborting job monitoring since job object (job id=6895475311) has expired
[2025-12-03 07:59:53] 2025-12-03 06:58:52,020 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 07:59:53] 2025-12-03 06:58:52,020 | INFO     | will abort loop
[2025-12-03 07:59:53] 2025-12-03 06:58:52,044 | INFO     | all payload control threads have been joined
[2025-12-03 07:59:53] 2025-12-03 06:58:52,314 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 07:59:53] 2025-12-03 06:58:52,315 | INFO     | [data] copytool_in thread has finished
[2025-12-03 07:59:53] 2025-12-03 06:58:52,365 | INFO     | [job] control thread has finished
[2025-12-03 07:59:53] 2025-12-03 06:58:52,492 | INFO     | [data] control thread has finished
[2025-12-03 07:59:53] 2025-12-03 06:58:52,633 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 07:59:53] 2025-12-03 06:58:52,744 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 07:59:53] 2025-12-03 06:58:52,759 | INFO     | [payload] validate_post thread has finished
[2025-12-03 07:59:53] 2025-12-03 06:58:52,799 | INFO     | [data] copytool_out thread has finished
[2025-12-03 07:59:53] 2025-12-03 06:58:53,025 | INFO     | [job] job monitor thread has finished
[2025-12-03 07:59:53] 2025-12-03 06:58:53,049 | INFO     | [payload] control thread has finished
[2025-12-03 07:59:53] 2025-12-03 06:58:53,130 | INFO     | [payload] failed_post thread has finished
[2025-12-03 07:59:53] 2025-12-03 06:58:53,223 | INFO     | [job] validate thread has finished
[2025-12-03 07:59:53] 2025-12-03 06:58:53,434 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 07:59:53] 2025-12-03 06:58:57,439 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 07:59:53] 2025-12-03 06:59:21,931 | INFO     | PID=14743 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-03 07:59:53] 2025-12-03 06:59:21,931 | INFO     | .. there are 4 such processes running
[2025-12-03 07:59:53] 2025-12-03 06:59:21,931 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 07:59:53] 2025-12-03 06:59:21,931 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 07:59:53] 2025-12-03 06:59:21,931 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 07:59:53] 2025-12-03 06:59:46,799 | INFO     | [monitor] cgroup control has ended
[2025-12-03 07:59:53] 2025-12-03 06:59:48,376 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456060819200)>']
[2025-12-03 07:59:53] 2025-12-03 06:59:49,063 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 07:59:53] 2025-12-03 06:59:49,064 | INFO     | [monitor] control thread has ended
[2025-12-03 07:59:53] 2025-12-03 06:59:53,401 | INFO     | all workflow threads have been joined
[2025-12-03 07:59:53] 2025-12-03 06:59:53,401 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 07:59:53] 2025-12-03 06:59:53,402 | INFO     | traces error code: 0
[2025-12-03 07:59:53] 2025-12-03 06:59:53,402 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 07:59:53] 2025-12-03 06:59:53,458 [wrapper] ==== pilot stdout END ====
[2025-12-03 07:59:53] 2025-12-03 06:59:53,459 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 07:59:53] 2025-12-03 06:59:53,460 [wrapper] pilotpid: 14743
[2025-12-03 07:59:53] 2025-12-03 06:59:53,461 [wrapper] Pilot exit status: 0
[2025-12-03 07:59:53] 2025-12-03 06:59:53,464 [wrapper] pandaids: 6895475311
[2025-12-03 07:59:53] 2025-12-03 06:59:53,486 [wrapper] cleanup supervisor_pilot 11970 14744
[2025-12-03 07:59:53] 2025-12-03 06:59:53,488 [wrapper] Test setup, not cleaning
[2025-12-03 07:59:53] 2025-12-03 06:59:53,489 [wrapper] apfmon messages muted
[2025-12-03 07:59:53] 2025-12-03 06:59:53,490 [wrapper] ==== wrapper stdout END ====
[2025-12-03 07:59:53] 2025-12-03 06:59:53,490 [wrapper] ==== wrapper stderr END ====
[2025-12-03 07:59:53]  *** Error codes and diagnostics ***
[2025-12-03 07:59:53]     "exeErrorCode": 0,
[2025-12-03 07:59:53]     "exeErrorDiag": "",
[2025-12-03 07:59:53]     "pilotErrorCode": 0,
[2025-12-03 07:59:53]     "pilotErrorDiag": "",
[2025-12-03 07:59:53]  *** Listing of results directory ***
[2025-12-03 07:59:53] total 1296404
[2025-12-03 07:59:53] -rw------- 1 mf493845 unix-user      5112 Nov 24 10:01 queuedata.json
[2025-12-03 07:59:53] -rw------- 1 mf493845 unix-user    576529 Nov 24 10:01 pilot3.tar.gz
[2025-12-03 07:59:53] -rwx------ 1 mf493845 unix-user     36292 Nov 24 10:02 runpilot2-wrapper.sh
[2025-12-03 07:59:53] -rw------- 1 mf493845 unix-user       100 Dec  3 01:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 07:59:53] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  3 01:58 run_atlas
[2025-12-03 07:59:53] -rw------- 1 mf493845 unix-user       105 Dec  3 01:58 job.xml
[2025-12-03 07:59:53] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 03:42 start_atlas.sh
[2025-12-03 07:59:53] drwxrwx--x 2 mf493845 unix-user       100 Dec  3 03:42 shared
[2025-12-03 07:59:53] -rw-r--r-- 2 mf493845 unix-user    590107 Dec  3 03:42 input.tar.gz
[2025-12-03 07:59:53] -rw------- 1 mf493845 unix-user      6392 Dec  3 03:42 init_data.xml
[2025-12-03 07:59:53] -rw-r--r-- 2 mf493845 unix-user 407655361 Dec  3 03:42 EVNT.47483658._001288.pool.root.1
[2025-12-03 07:59:53] -rw------- 1 mf493845 unix-user         0 Dec  3 03:42 boinc_setup_complete
[2025-12-03 07:59:53] -rw------- 1 mf493845 unix-user      8192 Dec  3 03:42 boinc_mmap_file
[2025-12-03 07:59:53] -rw------- 1 mf493845 unix-user         0 Dec  3 03:42 boinc_lockfile
[2025-12-03 07:59:53] -rw------- 1 mf493845 unix-user      2786 Dec  3 03:42 pandaJob.out
[2025-12-03 07:59:53] -rw------- 1 mf493845 unix-user    989292 Dec  3 03:42 agis_schedconf.cvmfs.json
[2025-12-03 07:59:53] drwx------ 5 mf493845 unix-user       440 Dec  3 03:42 pilot3
[2025-12-03 07:59:53] -rw------- 1 mf493845 unix-user 908441435 Dec  3 07:58 HITS.47556149._002750.pool.root.1
[2025-12-03 07:59:53] -rw------- 1 mf493845 unix-user        95 Dec  3 07:58 pilot_heartbeat.json
[2025-12-03 07:59:53] -rw------- 1 mf493845 unix-user      1027 Dec  3 07:58 memory_monitor_summary.json
[2025-12-03 07:59:53] -rw------- 1 mf493845 unix-user   1516240 Dec  3 07:58 agis_ddmendpoints.agis.ALL.json
[2025-12-03 07:59:53] -rw------- 1 mf493845 unix-user   1554633 Dec  3 07:58 log.47556149._002750.job.log.tgz.1
[2025-12-03 07:59:53] -rw------- 1 mf493845 unix-user      8589 Dec  3 07:58 heartbeat.json
[2025-12-03 07:59:53] -rw------- 1 mf493845 unix-user      6393 Dec  3 07:59 pilotlog.txt
[2025-12-03 07:59:53] -rw------- 1 mf493845 unix-user   2209588 Dec  3 07:59 log.47556149._002750.job.log.1
[2025-12-03 07:59:53] -rw------- 1 mf493845 unix-user       353 Dec  3 07:59 output.list
[2025-12-03 07:59:53] -rw------- 1 mf493845 unix-user       620 Dec  3 07:59 runtime_log
[2025-12-03 07:59:53] -rw------- 1 mf493845 unix-user   3788800 Dec  3 07:59 result.tar.gz
[2025-12-03 07:59:53] -rw------- 1 mf493845 unix-user      9221 Dec  3 07:59 runtime_log.err
[2025-12-03 07:59:53] -rw------- 1 mf493845 unix-user       651 Dec  3 07:59 mxSMDmldhh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmQZLKDmyFayqn.diag
[2025-12-03 07:59:53] -rw------- 1 mf493845 unix-user     22096 Dec  3 07:59 stderr.txt
[2025-12-03 07:59:53] HITS file was successfully produced:
[2025-12-03 07:59:53] -rw------- 1 mf493845 unix-user 908441435 Dec  3 07:58 shared/HITS.pool.root.1
[2025-12-03 07:59:53]  *** Contents of shared directory: ***
[2025-12-03 07:59:53] total 1289552
[2025-12-03 07:59:53] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 03:42 start_atlas.sh
[2025-12-03 07:59:53] -rw-r--r-- 2 mf493845 unix-user    590107 Dec  3 03:42 input.tar.gz
[2025-12-03 07:59:53] -rw-r--r-- 2 mf493845 unix-user 407655361 Dec  3 03:42 ATLAS.root_0
[2025-12-03 07:59:53] -rw------- 1 mf493845 unix-user 908441435 Dec  3 07:58 HITS.pool.root.1
[2025-12-03 07:59:53] -rw------- 1 mf493845 unix-user   3788800 Dec  3 07:59 result.tar.gz
07:59:54 (10997): run_atlas exited; CPU time 117785.680115
07:59:54 (10997): called boinc_finish(0)

</stderr_txt>
]]>

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