Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
03:41:07 (24040): wrapper (7.7.26015): starting
03:41:07 (24040): wrapper: running run_atlas (--nthreads 8)
[2025-12-03 03:41:07] Arguments: --nthreads 8
[2025-12-03 03:41:07] Threads: 8
[2025-12-03 03:41:07] Checking for CVMFS
[2025-12-03 03:41:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 03:41:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 03:41:07] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 03:41:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 03:41:07] 2.11.0.0 4279 75581 82496 153577 2 110 3958856 4096001 4616 130560 1 5330776 99.624 5173447 551 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-03 03:41:07] CVMFS is ok
[2025-12-03 03:41:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-03 03:41:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-03 03:41:07] Further information can be found at the LHC@home message board.
[2025-12-03 03:41:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 03:41:07] Checking for apptainer binary...
[2025-12-03 03:41:07] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-03 03:41:07] apptainer is not installed, using version from CVMFS
[2025-12-03 03:41:07] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 03:41:07] WARNING: Environment variable TMPDIR already has value [/tmp/job_10946788/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node342
[2025-12-03 03:41:07] apptainer works
[2025-12-03 03:41:07] Set ATHENA_PROC_NUMBER=8
[2025-12-03 03:41:07] Set ATHENA_CORE_NUMBER=8
[2025-12-03 03:41:07] Starting ATLAS job with PandaID=6895371780
[2025-12-03 03:41:07] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10946788/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 08:17:46]  *** The last 200 lines of the pilot log: ***
[2025-12-03 08:17:46] 2025-12-03 07:16:49,034 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-03 08:17:46] 2025-12-03 07:16:50,382 | INFO     | time since job start (16538s) is within the limit (172800.0s)
[2025-12-03 08:17:46] 2025-12-03 07:16:50,382 | INFO     | 16538s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-12-03 08:17:46] 2025-12-03 07:16:50,793 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 08:17:46] 2025-12-03 07:16:50,798 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2395.6059531250003
[2025-12-03 08:17:46] 2025-12-03 07:16:50,803 | INFO     | using path: /tmp/job_10946788/atlas/pilot/slots/0/PanDA_Pilot-6895371780/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 08:17:46] 2025-12-03 07:16:50,803 | INFO     | extracted standard info from prmon json
[2025-12-03 08:17:46] 2025-12-03 07:16:50,803 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 08:17:46] 2025-12-03 07:16:50,803 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 08:17:46] 2025-12-03 07:16:50,806 | INFO     | fitting pss+swap vs Time
[2025-12-03 08:17:46] 2025-12-03 07:16:50,806 | INFO     | sum of square deviations: 6171352920.0
[2025-12-03 08:17:46] 2025-12-03 07:16:50,807 | INFO     | sum of deviations: 112640397778.0
[2025-12-03 08:17:46] 2025-12-03 07:16:50,807 | INFO     | mean x: 1764737925.0
[2025-12-03 08:17:46] 2025-12-03 07:16:50,807 | INFO     | mean y: 2907555.667896679
[2025-12-03 08:17:46] 2025-12-03 07:16:50,807 | INFO     | intersect: -32207336198.45569
[2025-12-03 08:17:46] 2025-12-03 07:16:50,808 | INFO     | chi2: 2.892893395858213
[2025-12-03 08:17:46] 2025-12-03 07:16:50,808 | INFO     | sum of square deviations: 5836025702.5
[2025-12-03 08:17:46] 2025-12-03 07:16:50,809 | INFO     | sum of deviations: 156697415276.5
[2025-12-03 08:17:46] 2025-12-03 07:16:50,809 | INFO     | mean x: 1764737772.5
[2025-12-03 08:17:46] 2025-12-03 07:16:50,809 | INFO     | mean y: 2927396.6954887216
[2025-12-03 08:17:46] 2025-12-03 07:16:50,809 | INFO     | intersect: -47380319642.99797
[2025-12-03 08:17:46] 2025-12-03 07:16:50,809 | INFO     | chi2: 1.4024008745682144
[2025-12-03 08:17:46] 2025-12-03 07:16:50,809 | INFO     | current chi2=1.4024008745682144 (change=51.52255259125528 %)
[2025-12-03 08:17:46] 2025-12-03 07:16:50,809 | INFO     | sum of square deviations: 5513070810.0
[2025-12-03 08:17:46] 2025-12-03 07:16:50,810 | INFO     | sum of deviations: 151080242568.0
[2025-12-03 08:17:46] 2025-12-03 07:16:50,810 | INFO     | mean x: 1764737620.0
[2025-12-03 08:17:46] 2025-12-03 07:16:50,810 | INFO     | mean y: 2924743.9616858237
[2025-12-03 08:17:46] 2025-12-03 07:16:50,810 | INFO     | intersect: -48357961028.60379
[2025-12-03 08:17:46] 2025-12-03 07:16:50,811 | INFO     | chi2: 1.401356046890002
[2025-12-03 08:17:46] 2025-12-03 07:16:50,811 | INFO     | current chi2=1.401356046890002 (change=0.07450278284617791 %)
[2025-12-03 08:17:46] 2025-12-03 07:16:50,811 | INFO     | right removable region: 260
[2025-12-03 08:17:46] 2025-12-03 07:16:50,811 | INFO     | sum of square deviations: 5836025702.5
[2025-12-03 08:17:46] 2025-12-03 07:16:50,812 | INFO     | sum of deviations: 63406193159.50002
[2025-12-03 08:17:46] 2025-12-03 07:16:50,812 | INFO     | mean x: 1764738077.5
[2025-12-03 08:17:46] 2025-12-03 07:16:50,812 | INFO     | mean y: 2929771.236842105
[2025-12-03 08:17:46] 2025-12-03 07:16:50,812 | INFO     | intersect: -19170276297.742035
[2025-12-03 08:17:46] 2025-12-03 07:16:50,812 | INFO     | chi2: 1.5359217823309896
[2025-12-03 08:17:46] 2025-12-03 07:16:50,812 | INFO     | current chi2=1.5359217823309896 (change=46.90707287969941 %)
[2025-12-03 08:17:46] 2025-12-03 07:16:50,812 | INFO     | sum of square deviations: 5513070810.0
[2025-12-03 08:17:46] 2025-12-03 07:16:50,813 | INFO     | sum of deviations: 53581667329.00002
[2025-12-03 08:17:46] 2025-12-03 07:16:50,813 | INFO     | mean x: 1764738230.0
[2025-12-03 08:17:46] 2025-12-03 07:16:50,813 | INFO     | mean y: 2934404.5593869733
[2025-12-03 08:17:46] 2025-12-03 07:16:50,813 | INFO     | intersect: -17148598746.640667
[2025-12-03 08:17:46] 2025-12-03 07:16:50,814 | INFO     | chi2: 1.5255738653648123
[2025-12-03 08:17:46] 2025-12-03 07:16:50,814 | INFO     | current chi2=1.5255738653648123 (change=0.6737268189837646 %)
[2025-12-03 08:17:46] 2025-12-03 07:16:50,814 | INFO     | left removable region: 20
[2025-12-03 08:17:46] 2025-12-03 07:16:50,814 | INFO     | sum of square deviations: 4286517580.0
[2025-12-03 08:17:46] 2025-12-03 07:16:50,815 | INFO     | sum of deviations: 78656812126.5
[2025-12-03 08:17:46] 2025-12-03 07:16:50,815 | INFO     | mean x: 1764738199.5
[2025-12-03 08:17:46] 2025-12-03 07:16:50,815 | INFO     | mean y: 2960112.5458333334
[2025-12-03 08:17:46] 2025-12-03 07:16:50,815 | INFO     | intersect: -32379662475.58534
[2025-12-03 08:17:46] 2025-12-03 07:16:50,815 | INFO     | chi2: 0.012607545315587217
[2025-12-03 08:17:46] 2025-12-03 07:16:50,815 | INFO     | current memory leak: 18.35 B/s (using 240 data points, chi2=0.01)
[2025-12-03 08:17:46] 2025-12-03 07:16:50,815 | INFO     | could have reported an average CPU frequency of 2858 MHz (13 samples)
[2025-12-03 08:17:46] 2025-12-03 07:16:50,815 | INFO     | ..............................
[2025-12-03 08:17:46] 2025-12-03 07:16:50,815 | INFO     | . Timing measurements:
[2025-12-03 08:17:46] 2025-12-03 07:16:50,815 | INFO     | . get job = 0 s
[2025-12-03 08:17:46] 2025-12-03 07:16:50,815 | INFO     | . initial setup = 1 s
[2025-12-03 08:17:46] 2025-12-03 07:16:50,815 | INFO     | . payload setup = 2 s
[2025-12-03 08:17:46] 2025-12-03 07:16:50,815 | INFO     | . stage-in = 0 s
[2025-12-03 08:17:46] 2025-12-03 07:16:50,815 | INFO     | . payload execution = 16512 s
[2025-12-03 08:17:46] 2025-12-03 07:16:50,815 | INFO     | . stage-out = 1 s
[2025-12-03 08:17:46] 2025-12-03 07:16:50,815 | INFO     | . log creation = 0 s
[2025-12-03 08:17:46] 2025-12-03 07:16:50,816 | INFO     | ..............................
[2025-12-03 08:17:46] 2025-12-03 07:16:50,865 | INFO     | 
[2025-12-03 08:17:46] 2025-12-03 07:16:50,865 | INFO     | job summary report
[2025-12-03 08:17:46] 2025-12-03 07:16:50,865 | INFO     | --------------------------------------------------
[2025-12-03 08:17:46] 2025-12-03 07:16:50,865 | INFO     | PanDA job id: 6895371780
[2025-12-03 08:17:46] 2025-12-03 07:16:50,865 | INFO     | task id: 47556149
[2025-12-03 08:17:46] 2025-12-03 07:16:50,865 | INFO     | errors: (none)
[2025-12-03 08:17:46] 2025-12-03 07:16:50,865 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 08:17:46] 2025-12-03 07:16:50,865 | INFO     | pilot state: finished 
[2025-12-03 08:17:46] 2025-12-03 07:16:50,865 | INFO     | transexitcode: 0
[2025-12-03 08:17:46] 2025-12-03 07:16:50,865 | INFO     | exeerrorcode: 0
[2025-12-03 08:17:46] 2025-12-03 07:16:50,865 | INFO     | exeerrordiag: 
[2025-12-03 08:17:46] 2025-12-03 07:16:50,865 | INFO     | exitcode: 0
[2025-12-03 08:17:46] 2025-12-03 07:16:50,865 | INFO     | exitmsg: OK
[2025-12-03 08:17:46] 2025-12-03 07:16:50,865 | INFO     | cpuconsumptiontime: 122583 s
[2025-12-03 08:17:46] 2025-12-03 07:16:50,865 | INFO     | nevents: 1000
[2025-12-03 08:17:46] 2025-12-03 07:16:50,865 | INFO     | neventsw: 0
[2025-12-03 08:17:46] 2025-12-03 07:16:50,865 | INFO     | pid: 4799
[2025-12-03 08:17:46] 2025-12-03 07:16:50,865 | INFO     | pgrp: 4799
[2025-12-03 08:17:46] 2025-12-03 07:16:50,865 | INFO     | corecount: 8
[2025-12-03 08:17:46] 2025-12-03 07:16:50,865 | INFO     | event service: False
[2025-12-03 08:17:46] 2025-12-03 07:16:50,865 | INFO     | sizes: {0: 2284390, 2: 2284652, 11: 2284680, 16518: 2317544, 16521: 2326568, 16522: 2326624, 16526: 2326998}
[2025-12-03 08:17:46] 2025-12-03 07:16:50,866 | INFO     | --------------------------------------------------
[2025-12-03 08:17:46] 2025-12-03 07:16:50,866 | INFO     | 
[2025-12-03 08:17:46] 2025-12-03 07:16:50,866 | INFO     | executing command: ls -lF /tmp/job_10946788/atlas/pilot/slots/0
[2025-12-03 08:17:46] 2025-12-03 07:16:50,874 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 08:17:46] 2025-12-03 07:16:50,875 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 08:17:46] 2025-12-03 07:16:50,875 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 08:17:46] 2025-12-03 07:16:50,875 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 08:17:46] 2025-12-03 07:16:50,875 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 08:17:46] 2025-12-03 07:16:50,875 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 08:17:46] 2025-12-03 07:16:50,875 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 08:17:46] 2025-12-03 07:16:50,875 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 08:17:46] 2025-12-03 07:16:50,875 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 08:17:46] 2025-12-03 07:16:50,875 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 08:17:46] 2025-12-03 07:16:50,875 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 08:17:46] 2025-12-03 07:16:50,875 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 08:17:46] 2025-12-03 07:16:50,875 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 08:17:46] 2025-12-03 07:16:50,875 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 08:17:46] 2025-12-03 07:16:50,875 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 08:17:46] 2025-12-03 07:16:50,875 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 08:17:46] 2025-12-03 07:16:50,875 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 08:17:46] 2025-12-03 07:16:50,875 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 08:17:46] 2025-12-03 07:16:50,875 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 08:17:46] 2025-12-03 07:16:50,875 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 08:17:46] 2025-12-03 07:16:50,875 | INFO     | job 6895371780 has completed (purged errors)
[2025-12-03 08:17:46] 2025-12-03 07:16:50,876 | INFO     | overall cleanup function is called
[2025-12-03 08:17:46] 2025-12-03 07:16:51,883 | INFO     | --- collectZombieJob: --- 10, [4799]
[2025-12-03 08:17:46] 2025-12-03 07:16:51,883 | INFO     | zombie collector waiting for pid 4799
[2025-12-03 08:17:46] 2025-12-03 07:16:51,883 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 08:17:46] 2025-12-03 07:16:51,883 | INFO     | collected zombie processes
[2025-12-03 08:17:46] 2025-12-03 07:16:51,883 | INFO     | will attempt to kill all subprocesses of pid=4799
[2025-12-03 08:17:46] 2025-12-03 07:16:51,973 | INFO     | process IDs to be killed: [4799] (in reverse order)
[2025-12-03 08:17:46] 2025-12-03 07:16:52,005 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 08:17:46] 2025-12-03 07:16:52,006 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 08:17:46] 2025-12-03 07:16:52,009 | INFO     | did not find any defunct processes belonging to 4799
[2025-12-03 08:17:46] 2025-12-03 07:16:52,011 | INFO     | did not find any defunct processes belonging to 4799
[2025-12-03 08:17:46] 2025-12-03 07:16:52,012 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 08:17:46] 2025-12-03 07:16:52,012 | INFO     | ready for new job
[2025-12-03 08:17:46] 2025-12-03 07:16:52,012 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 08:17:46] 2025-12-03 07:16:52,013 | INFO     | ***************************************
[2025-12-03 08:17:46] 2025-12-03 07:16:52,013 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 08:17:46] 2025-12-03 07:16:52,013 | INFO     | ***************************************
[2025-12-03 08:17:46] 2025-12-03 07:16:52,013 | INFO     | 
[2025-12-03 08:17:46] 2025-12-03 07:16:52,026 | INFO     | architecture information:
[2025-12-03 08:17:46] 2025-12-03 07:16:52,026 | INFO     | executing command: cat /etc/os-release
[2025-12-03 08:17:46] 2025-12-03 07:16:52,033 | INFO     | cat /etc/os-release:
[2025-12-03 08:17:46] NAME="CentOS Linux"
[2025-12-03 08:17:46] VERSION="7 (Core)"
[2025-12-03 08:17:46] ID="centos"
[2025-12-03 08:17:46] ID_LIKE="rhel fedora"
[2025-12-03 08:17:46] VERSION_ID="7"
[2025-12-03 08:17:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 08:17:46] ANSI_COLOR="0;31"
[2025-12-03 08:17:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 08:17:46] HOME_URL="https://www.centos.org/"
[2025-12-03 08:17:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 08:17:46] 
[2025-12-03 08:17:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 08:17:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 08:17:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 08:17:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 08:17:46] 
[2025-12-03 08:17:46] 2025-12-03 07:16:52,033 | INFO     | ***************************************
[2025-12-03 08:17:46] 2025-12-03 07:16:52,535 | INFO     | executing command: df -mP /tmp/job_10946788/atlas/pilot/slots/0
[2025-12-03 08:17:46] 2025-12-03 07:16:52,542 | INFO     | sufficient remaining disk space (223881461760 B)
[2025-12-03 08:17:46] 2025-12-03 07:16:52,542 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 08:17:46] 2025-12-03 07:16:52,542 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 08:17:46] 2025-12-03 07:16:52,542 | INFO     | update_server=False
[2025-12-03 08:17:46] 2025-12-03 07:16:52,542 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 08:17:46] 2025-12-03 07:16:52,542 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 08:17:46] 2025-12-03 07:16:52,542 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 08:17:46] 2025-12-03 07:16:52,542 | INFO     | aborting loop
[2025-12-03 08:17:46] 2025-12-03 07:16:52,605 | INFO     | all data control threads have been joined
[2025-12-03 08:17:46] 2025-12-03 07:16:52,706 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 08:17:46] 2025-12-03 07:16:53,448 | INFO     | all payload control threads have been joined
[2025-12-03 08:17:46] 2025-12-03 07:16:53,543 | INFO     | [job] queue monitor thread has finished
[2025-12-03 08:17:46] 2025-12-03 07:16:53,543 | INFO     | [job] job monitor thread has finished
[2025-12-03 08:17:46] 2025-12-03 07:16:53,543 | INFO     | [job] retrieve thread has finished
[2025-12-03 08:17:46] 2025-12-03 07:16:53,561 | INFO     | [data] copytool_in thread has finished
[2025-12-03 08:17:46] 2025-12-03 07:16:53,610 | INFO     | [data] control thread has finished
[2025-12-03 08:17:46] 2025-12-03 07:16:53,800 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 08:17:46] 2025-12-03 07:16:53,807 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 08:17:46] 2025-12-03 07:16:53,914 | INFO     | all job control threads have been joined
[2025-12-03 08:17:46] 2025-12-03 07:16:54,132 | INFO     | [payload] validate_post thread has finished
[2025-12-03 08:17:46] 2025-12-03 07:16:54,453 | INFO     | [payload] control thread has finished
[2025-12-03 08:17:46] 2025-12-03 07:16:54,659 | INFO     | [job] validate thread has finished
[2025-12-03 08:17:46] 2025-12-03 07:16:54,700 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 08:17:46] 2025-12-03 07:16:54,773 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 08:17:46] 2025-12-03 07:16:54,919 | INFO     | [job] control thread has finished
[2025-12-03 08:17:46] 2025-12-03 07:16:55,007 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 08:17:46] 2025-12-03 07:16:55,021 | INFO     | [payload] failed_post thread has finished
[2025-12-03 08:17:46] 2025-12-03 07:16:55,808 | INFO     | [data] copytool_out thread has finished
[2025-12-03 08:17:46] 2025-12-03 07:16:56,712 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 08:17:46] 2025-12-03 07:17:23,557 | INFO     | PID=28709 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-03 08:17:46] 2025-12-03 07:17:23,558 | INFO     | .. there are 2 such processes running
[2025-12-03 08:17:46] 2025-12-03 07:17:23,558 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 08:17:46] 2025-12-03 07:17:23,558 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 08:17:46] 2025-12-03 07:17:23,558 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 08:17:46] 2025-12-03 07:17:39,742 | INFO     | [monitor] cgroup control has ended
[2025-12-03 08:17:46] 2025-12-03 07:17:41,083 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456065021696)>']
[2025-12-03 08:17:46] 2025-12-03 07:17:41,646 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 08:17:46] 2025-12-03 07:17:41,646 | INFO     | [monitor] control thread has ended
[2025-12-03 08:17:46] 2025-12-03 07:17:46,109 | INFO     | all workflow threads have been joined
[2025-12-03 08:17:46] 2025-12-03 07:17:46,109 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 08:17:46] 2025-12-03 07:17:46,109 | INFO     | traces error code: 0
[2025-12-03 08:17:46] 2025-12-03 07:17:46,109 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 08:17:46] 2025-12-03 07:17:46,162 [wrapper] ==== pilot stdout END ====
[2025-12-03 08:17:46] 2025-12-03 07:17:46,163 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 08:17:46] 2025-12-03 07:17:46,164 [wrapper] pilotpid: 28709
[2025-12-03 08:17:46] 2025-12-03 07:17:46,166 [wrapper] Pilot exit status: 0
[2025-12-03 08:17:46] 2025-12-03 07:17:46,170 [wrapper] pandaids: 6895371780
[2025-12-03 08:17:46] 2025-12-03 07:17:46,193 [wrapper] cleanup supervisor_pilot 15197 28710
[2025-12-03 08:17:46] 2025-12-03 07:17:46,195 [wrapper] Test setup, not cleaning
[2025-12-03 08:17:46] 2025-12-03 07:17:46,196 [wrapper] apfmon messages muted
[2025-12-03 08:17:46] 2025-12-03 07:17:46,197 [wrapper] ==== wrapper stdout END ====
[2025-12-03 08:17:46] 2025-12-03 07:17:46,198 [wrapper] ==== wrapper stderr END ====
[2025-12-03 08:17:46]  *** Error codes and diagnostics ***
[2025-12-03 08:17:46]     "exeErrorCode": 0,
[2025-12-03 08:17:46]     "exeErrorDiag": "",
[2025-12-03 08:17:46]     "pilotErrorCode": 0,
[2025-12-03 08:17:46]     "pilotErrorDiag": "",
[2025-12-03 08:17:46]  *** Listing of results directory ***
[2025-12-03 08:17:46] total 1310724
[2025-12-03 08:17:46] -rw------- 1 mf493845 unix-user    576529 Nov 23 22:23 pilot3.tar.gz
[2025-12-03 08:17:46] -rw------- 1 mf493845 unix-user      5112 Nov 23 22:47 queuedata.json
[2025-12-03 08:17:46] -rwx------ 1 mf493845 unix-user     36292 Nov 23 22:47 runpilot2-wrapper.sh
[2025-12-03 08:17:46] -rw------- 1 mf493845 unix-user       100 Dec  3 01:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 08:17:46] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  3 01:56 run_atlas
[2025-12-03 08:17:46] -rw------- 1 mf493845 unix-user       105 Dec  3 01:56 job.xml
[2025-12-03 08:17:46] -rw-r--r-- 2 mf493845 unix-user 410371537 Dec  3 03:41 EVNT.47483658._001194.pool.root.1
[2025-12-03 08:17:46] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 03:41 start_atlas.sh
[2025-12-03 08:17:46] drwxrwx--x 2 mf493845 unix-user       100 Dec  3 03:41 shared
[2025-12-03 08:17:46] -rw-r--r-- 2 mf493845 unix-user    590104 Dec  3 03:41 input.tar.gz
[2025-12-03 08:17:46] -rw------- 1 mf493845 unix-user      6391 Dec  3 03:41 init_data.xml
[2025-12-03 08:17:46] -rw------- 1 mf493845 unix-user         0 Dec  3 03:41 boinc_setup_complete
[2025-12-03 08:17:46] -rw------- 1 mf493845 unix-user      8192 Dec  3 03:41 boinc_mmap_file
[2025-12-03 08:17:46] -rw------- 1 mf493845 unix-user         0 Dec  3 03:41 boinc_lockfile
[2025-12-03 08:17:46] -rw------- 1 mf493845 unix-user      2785 Dec  3 03:41 pandaJob.out
[2025-12-03 08:17:46] -rw------- 1 mf493845 unix-user    989292 Dec  3 03:41 agis_schedconf.cvmfs.json
[2025-12-03 08:17:46] drwx------ 5 mf493845 unix-user       440 Dec  3 03:41 pilot3
[2025-12-03 08:17:46] -rw------- 1 mf493845 unix-user 920014345 Dec  3 08:16 HITS.47556149._001802.pool.root.1
[2025-12-03 08:17:46] -rw------- 1 mf493845 unix-user      1030 Dec  3 08:16 memory_monitor_summary.json
[2025-12-03 08:17:46] -rw------- 1 mf493845 unix-user   1516240 Dec  3 08:16 agis_ddmendpoints.agis.ALL.json
[2025-12-03 08:17:46] -rw------- 1 mf493845 unix-user   1566719 Dec  3 08:16 log.47556149._001802.job.log.tgz.1
[2025-12-03 08:17:46] -rw------- 1 mf493845 unix-user        95 Dec  3 08:16 pilot_heartbeat.json
[2025-12-03 08:17:46] -rw------- 1 mf493845 unix-user      8599 Dec  3 08:16 heartbeat.json
[2025-12-03 08:17:46] -rw------- 1 mf493845 unix-user      4835 Dec  3 08:17 pilotlog.txt
[2025-12-03 08:17:46] -rw------- 1 mf493845 unix-user   2388484 Dec  3 08:17 log.47556149._001802.job.log.1
[2025-12-03 08:17:46] -rw------- 1 mf493845 unix-user       353 Dec  3 08:17 output.list
[2025-12-03 08:17:46] -rw------- 1 mf493845 unix-user       620 Dec  3 08:17 runtime_log
[2025-12-03 08:17:46] -rw------- 1 mf493845 unix-user   3973120 Dec  3 08:17 result.tar.gz
[2025-12-03 08:17:46] -rw------- 1 mf493845 unix-user      9221 Dec  3 08:17 runtime_log.err
[2025-12-03 08:17:46] -rw------- 1 mf493845 unix-user       651 Dec  3 08:17 cHCNDmy6Wh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm4lIKDmTwBU6n.diag
[2025-12-03 08:17:46] -rw------- 1 mf493845 unix-user     21803 Dec  3 08:17 stderr.txt
[2025-12-03 08:17:46] HITS file was successfully produced:
[2025-12-03 08:17:46] -rw------- 1 mf493845 unix-user 920014345 Dec  3 08:16 shared/HITS.pool.root.1
[2025-12-03 08:17:46]  *** Contents of shared directory: ***
[2025-12-03 08:17:46] total 1303684
[2025-12-03 08:17:46] -rw-r--r-- 2 mf493845 unix-user 410371537 Dec  3 03:41 ATLAS.root_0
[2025-12-03 08:17:46] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 03:41 start_atlas.sh
[2025-12-03 08:17:46] -rw-r--r-- 2 mf493845 unix-user    590104 Dec  3 03:41 input.tar.gz
[2025-12-03 08:17:46] -rw------- 1 mf493845 unix-user 920014345 Dec  3 08:16 HITS.pool.root.1
[2025-12-03 08:17:46] -rw------- 1 mf493845 unix-user   3973120 Dec  3 08:17 result.tar.gz
08:17:48 (24040): run_atlas exited; CPU time 122750.516713
08:17:48 (24040): called boinc_finish(0)

</stderr_txt>
]]>

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