Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
03:13:48 (3253): wrapper (7.7.26015): starting
03:13:48 (3253): wrapper: running run_atlas (--nthreads 8)
[2025-12-03 03:13:48] Arguments: --nthreads 8
[2025-12-03 03:13:48] Threads: 8
[2025-12-03 03:13:48] Checking for CVMFS
[2025-12-03 03:13:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 03:13:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 03:13:48] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 03:13:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 03:13:49] 2.11.0.0 4279 75554 83304 153576 2 1 3921599 4096001 0 130560 1 5047359 99.603 5171837 551 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-03 03:13:49] CVMFS is ok
[2025-12-03 03:13:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-03 03:13:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-03 03:13:49] Further information can be found at the LHC@home message board.
[2025-12-03 03:13:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 03:13:49] Checking for apptainer binary...
[2025-12-03 03:13:49] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-03 03:13:49] apptainer is not installed, using version from CVMFS
[2025-12-03 03:13:49] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 03:13:49] WARNING: Environment variable TMPDIR already has value [/tmp/job_10946734/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node342
[2025-12-03 03:13:49] apptainer works
[2025-12-03 03:13:49] Set ATHENA_PROC_NUMBER=8
[2025-12-03 03:13:49] Set ATHENA_CORE_NUMBER=8
[2025-12-03 03:13:49] Starting ATLAS job with PandaID=6897782008
[2025-12-03 03:13:49] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10946734/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 07:01:24]  *** The last 200 lines of the pilot log: ***
[2025-12-03 07:01:24] 2025-12-03 06:01:03,909 | INFO     | log transfer has been attempted: DONE
[2025-12-03 07:01:24] 2025-12-03 06:01:03,909 | INFO     | job 6897782008 has finished - writing final server update
[2025-12-03 07:01:24] 2025-12-03 06:01:03,909 | INFO     | total number of processed events: 1000 (read)
[2025-12-03 07:01:24] 2025-12-03 06:01:03,910 | INFO     | executing command: lscpu
[2025-12-03 07:01:24] 2025-12-03 06:01:03,940 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-03 07:01:24] 2025-12-03 06:01:04,542 | INFO     | monitor loop #996: job 0:6897782008 is in state 'finished'
[2025-12-03 07:01:24] 2025-12-03 06:01:04,543 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 07:01:24] 2025-12-03 06:01:04,671 | INFO     | PID=12293 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-03 07:01:24] 2025-12-03 06:01:04,671 | INFO     | .. there are 6 such processes running
[2025-12-03 07:01:24] 2025-12-03 06:01:05,662 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 07:01:24] 2025-12-03 06:01:05,667 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2927.809515625
[2025-12-03 07:01:24] 2025-12-03 06:01:05,671 | INFO     | time since job start (13629s) is within the limit (172800.0s)
[2025-12-03 07:01:24] 2025-12-03 06:01:05,672 | INFO     | using path: /tmp/job_10946734/atlas/pilot/slots/0/PanDA_Pilot-6897782008/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 07:01:24] 2025-12-03 06:01:05,672 | INFO     | extracted standard info from prmon json
[2025-12-03 07:01:24] 2025-12-03 06:01:05,672 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 07:01:24] 2025-12-03 06:01:05,672 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 07:01:24] 2025-12-03 06:01:05,674 | INFO     | fitting pss+swap vs Time
[2025-12-03 07:01:24] 2025-12-03 06:01:05,675 | INFO     | sum of square deviations: 3438620752.0
[2025-12-03 07:01:24] 2025-12-03 06:01:05,675 | INFO     | sum of deviations: 1307694477179.998
[2025-12-03 07:01:24] 2025-12-03 06:01:05,675 | INFO     | mean x: 1764734827.0
[2025-12-03 07:01:24] 2025-12-03 06:01:05,675 | INFO     | mean y: 4826099.968609866
[2025-12-03 07:01:24] 2025-12-03 06:01:05,675 | INFO     | intersect: -671117159542.9248
[2025-12-03 07:01:24] 2025-12-03 06:01:05,676 | INFO     | chi2: 5.048961998310043
[2025-12-03 07:01:24] 2025-12-03 06:01:05,676 | INFO     | sum of square deviations: 3212467674.5
[2025-12-03 07:01:24] 2025-12-03 06:01:05,676 | INFO     | sum of deviations: 1310938473558.5002
[2025-12-03 07:01:24] 2025-12-03 06:01:05,676 | INFO     | mean x: 1764734674.5
[2025-12-03 07:01:24] 2025-12-03 06:01:05,677 | INFO     | mean y: 4827484.4724770645
[2025-12-03 07:01:24] 2025-12-03 06:01:05,677 | INFO     | intersect: -720145167732.1678
[2025-12-03 07:01:24] 2025-12-03 06:01:05,677 | INFO     | chi2: 4.230255183142569
[2025-12-03 07:01:24] 2025-12-03 06:01:05,677 | INFO     | current chi2=4.230255183142569 (change=16.2153491240676 %)
[2025-12-03 07:01:24] 2025-12-03 06:01:05,677 | INFO     | right removable region: 217
[2025-12-03 07:01:24] 2025-12-03 06:01:05,677 | INFO     | sum of square deviations: 3212467674.5
[2025-12-03 07:01:24] 2025-12-03 06:01:05,678 | INFO     | sum of deviations: 1199838881703.9998
[2025-12-03 07:01:24] 2025-12-03 06:01:05,678 | INFO     | mean x: 1764734979.5
[2025-12-03 07:01:24] 2025-12-03 06:01:05,678 | INFO     | mean y: 4898516.091743119
[2025-12-03 07:01:24] 2025-12-03 06:01:05,678 | INFO     | intersect: -659113840985.8615
[2025-12-03 07:01:24] 2025-12-03 06:01:05,678 | INFO     | chi2: 3.2750925031167712
[2025-12-03 07:01:24] 2025-12-03 06:01:05,678 | INFO     | current chi2=3.2750925031167712 (change=35.13335009823821 %)
[2025-12-03 07:01:24] 2025-12-03 06:01:05,678 | INFO     | sum of square deviations: 2996454322.0
[2025-12-03 07:01:24] 2025-12-03 06:01:05,679 | INFO     | sum of deviations: 1140204526768.0002
[2025-12-03 07:01:24] 2025-12-03 06:01:05,679 | INFO     | mean x: 1764735132.0
[2025-12-03 07:01:24] 2025-12-03 06:01:05,679 | INFO     | mean y: 4940614.225352113
[2025-12-03 07:01:24] 2025-12-03 06:01:05,679 | INFO     | intersect: -671508378070.3384
[2025-12-03 07:01:24] 2025-12-03 06:01:05,679 | INFO     | chi2: 3.067005006739666
[2025-12-03 07:01:24] 2025-12-03 06:01:05,679 | INFO     | current chi2=3.067005006739666 (change=6.353637223347944 %)
[2025-12-03 07:01:24] 2025-12-03 06:01:05,679 | INFO     | left removable region: 20
[2025-12-03 07:01:24] 2025-12-03 06:01:05,679 | INFO     | sum of square deviations: 2370641658.0
[2025-12-03 07:01:24] 2025-12-03 06:01:05,680 | INFO     | sum of deviations: 1018294159009.0
[2025-12-03 07:01:24] 2025-12-03 06:01:05,680 | INFO     | mean x: 1764735254.0
[2025-12-03 07:01:24] 2025-12-03 06:01:05,680 | INFO     | mean y: 5018848.340101522
[2025-12-03 07:01:24] 2025-12-03 06:01:05,680 | INFO     | intersect: -758025869236.8401
[2025-12-03 07:01:24] 2025-12-03 06:01:05,680 | INFO     | chi2: 1.547490539983595
[2025-12-03 07:01:24] 2025-12-03 06:01:05,680 | INFO     | current memory leak: 429.54 B/s (using 197 data points, chi2=1.55)
[2025-12-03 07:01:24] 2025-12-03 06:01:05,680 | INFO     | could have reported an average CPU frequency of 2843 MHz (11 samples)
[2025-12-03 07:01:24] 2025-12-03 06:01:05,680 | INFO     | ..............................
[2025-12-03 07:01:24] 2025-12-03 06:01:05,681 | INFO     | . Timing measurements:
[2025-12-03 07:01:24] 2025-12-03 06:01:05,681 | INFO     | . get job = 0 s
[2025-12-03 07:01:24] 2025-12-03 06:01:05,681 | INFO     | . initial setup = 1 s
[2025-12-03 07:01:24] 2025-12-03 06:01:05,681 | INFO     | . payload setup = 4 s
[2025-12-03 07:01:24] 2025-12-03 06:01:05,681 | INFO     | . stage-in = 0 s
[2025-12-03 07:01:24] 2025-12-03 06:01:05,681 | INFO     | . payload execution = 13603 s
[2025-12-03 07:01:24] 2025-12-03 06:01:05,681 | INFO     | . stage-out = 1 s
[2025-12-03 07:01:24] 2025-12-03 06:01:05,681 | INFO     | . log creation = 0 s
[2025-12-03 07:01:24] 2025-12-03 06:01:05,681 | INFO     | ..............................
[2025-12-03 07:01:24] 2025-12-03 06:01:05,729 | INFO     | 
[2025-12-03 07:01:24] 2025-12-03 06:01:05,729 | INFO     | job summary report
[2025-12-03 07:01:24] 2025-12-03 06:01:05,729 | INFO     | --------------------------------------------------
[2025-12-03 07:01:24] 2025-12-03 06:01:05,729 | INFO     | PanDA job id: 6897782008
[2025-12-03 07:01:24] 2025-12-03 06:01:05,729 | INFO     | task id: 47530783
[2025-12-03 07:01:24] 2025-12-03 06:01:05,729 | INFO     | errors: (none)
[2025-12-03 07:01:24] 2025-12-03 06:01:05,729 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 07:01:24] 2025-12-03 06:01:05,729 | INFO     | pilot state: finished 
[2025-12-03 07:01:24] 2025-12-03 06:01:05,729 | INFO     | transexitcode: 0
[2025-12-03 07:01:24] 2025-12-03 06:01:05,729 | INFO     | exeerrorcode: 0
[2025-12-03 07:01:24] 2025-12-03 06:01:05,729 | INFO     | exeerrordiag: 
[2025-12-03 07:01:24] 2025-12-03 06:01:05,729 | INFO     | exitcode: 0
[2025-12-03 07:01:24] 2025-12-03 06:01:05,729 | INFO     | exitmsg: OK
[2025-12-03 07:01:24] 2025-12-03 06:01:05,729 | INFO     | cpuconsumptiontime: 103377 s
[2025-12-03 07:01:24] 2025-12-03 06:01:05,729 | INFO     | nevents: 1000
[2025-12-03 07:01:24] 2025-12-03 06:01:05,729 | INFO     | neventsw: 0
[2025-12-03 07:01:24] 2025-12-03 06:01:05,729 | INFO     | pid: 29370
[2025-12-03 07:01:24] 2025-12-03 06:01:05,730 | INFO     | pgrp: 29370
[2025-12-03 07:01:24] 2025-12-03 06:01:05,730 | INFO     | corecount: 8
[2025-12-03 07:01:24] 2025-12-03 06:01:05,730 | INFO     | event service: False
[2025-12-03 07:01:24] 2025-12-03 06:01:05,730 | INFO     | sizes: {0: 2284575, 2: 2284837, 11: 2284865, 13610: 2335110, 13612: 2344134, 13613: 2344190, 13617: 2344564}
[2025-12-03 07:01:24] 2025-12-03 06:01:05,730 | INFO     | --------------------------------------------------
[2025-12-03 07:01:24] 2025-12-03 06:01:05,730 | INFO     | 
[2025-12-03 07:01:24] 2025-12-03 06:01:05,730 | INFO     | executing command: ls -lF /tmp/job_10946734/atlas/pilot/slots/0
[2025-12-03 07:01:24] 2025-12-03 06:01:05,739 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 07:01:24] 2025-12-03 06:01:05,739 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 07:01:24] 2025-12-03 06:01:05,739 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 07:01:24] 2025-12-03 06:01:05,739 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 07:01:24] 2025-12-03 06:01:05,739 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 07:01:24] 2025-12-03 06:01:05,739 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 07:01:24] 2025-12-03 06:01:05,739 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 07:01:24] 2025-12-03 06:01:05,739 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 07:01:24] 2025-12-03 06:01:05,739 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 07:01:24] 2025-12-03 06:01:05,739 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 07:01:24] 2025-12-03 06:01:05,739 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 07:01:24] 2025-12-03 06:01:05,739 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 07:01:24] 2025-12-03 06:01:05,739 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 07:01:24] 2025-12-03 06:01:05,739 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 07:01:24] 2025-12-03 06:01:05,739 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 07:01:24] 2025-12-03 06:01:05,739 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 07:01:24] 2025-12-03 06:01:05,740 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 07:01:24] 2025-12-03 06:01:05,740 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 07:01:24] 2025-12-03 06:01:05,740 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 07:01:24] 2025-12-03 06:01:05,740 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 07:01:24] 2025-12-03 06:01:05,740 | INFO     | job 6897782008 has completed (purged errors)
[2025-12-03 07:01:24] 2025-12-03 06:01:05,740 | INFO     | overall cleanup function is called
[2025-12-03 07:01:24] 2025-12-03 06:01:06,743 | INFO     | --- collectZombieJob: --- 10, [29370]
[2025-12-03 07:01:24] 2025-12-03 06:01:06,743 | INFO     | zombie collector waiting for pid 29370
[2025-12-03 07:01:24] 2025-12-03 06:01:06,743 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 07:01:24] 2025-12-03 06:01:06,743 | INFO     | collected zombie processes
[2025-12-03 07:01:24] 2025-12-03 06:01:06,743 | INFO     | will attempt to kill all subprocesses of pid=29370
[2025-12-03 07:01:24] 2025-12-03 06:01:06,854 | INFO     | process IDs to be killed: [29370] (in reverse order)
[2025-12-03 07:01:24] 2025-12-03 06:01:06,894 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 07:01:24] 2025-12-03 06:01:06,894 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 07:01:24] 2025-12-03 06:01:06,898 | INFO     | did not find any defunct processes belonging to 29370
[2025-12-03 07:01:24] 2025-12-03 06:01:06,901 | INFO     | did not find any defunct processes belonging to 29370
[2025-12-03 07:01:24] 2025-12-03 06:01:06,902 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 07:01:24] 2025-12-03 06:01:06,902 | INFO     | ready for new job
[2025-12-03 07:01:24] 2025-12-03 06:01:06,902 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 07:01:24] 2025-12-03 06:01:06,903 | INFO     | ***************************************
[2025-12-03 07:01:24] 2025-12-03 06:01:06,903 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 07:01:24] 2025-12-03 06:01:06,903 | INFO     | ***************************************
[2025-12-03 07:01:24] 2025-12-03 06:01:06,903 | INFO     | 
[2025-12-03 07:01:24] 2025-12-03 06:01:06,917 | INFO     | architecture information:
[2025-12-03 07:01:24] 2025-12-03 06:01:06,917 | INFO     | executing command: cat /etc/os-release
[2025-12-03 07:01:24] 2025-12-03 06:01:06,923 | INFO     | cat /etc/os-release:
[2025-12-03 07:01:24] NAME="CentOS Linux"
[2025-12-03 07:01:24] VERSION="7 (Core)"
[2025-12-03 07:01:24] ID="centos"
[2025-12-03 07:01:24] ID_LIKE="rhel fedora"
[2025-12-03 07:01:24] VERSION_ID="7"
[2025-12-03 07:01:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 07:01:24] ANSI_COLOR="0;31"
[2025-12-03 07:01:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 07:01:24] HOME_URL="https://www.centos.org/"
[2025-12-03 07:01:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 07:01:24] 
[2025-12-03 07:01:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 07:01:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 07:01:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 07:01:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 07:01:24] 
[2025-12-03 07:01:24] 2025-12-03 06:01:06,923 | INFO     | ***************************************
[2025-12-03 07:01:24] 2025-12-03 06:01:07,426 | INFO     | executing command: df -mP /tmp/job_10946734/atlas/pilot/slots/0
[2025-12-03 07:01:24] 2025-12-03 06:01:07,432 | INFO     | sufficient remaining disk space (218540015616 B)
[2025-12-03 07:01:24] 2025-12-03 06:01:07,432 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 07:01:24] 2025-12-03 06:01:07,432 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 07:01:24] 2025-12-03 06:01:07,432 | INFO     | update_server=False
[2025-12-03 07:01:24] 2025-12-03 06:01:07,432 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 07:01:24] 2025-12-03 06:01:07,432 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-12-03 07:01:24] 2025-12-03 06:01:07,432 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 07:01:24] 2025-12-03 06:01:07,432 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 07:01:24] 2025-12-03 06:01:07,432 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 07:01:24] 2025-12-03 06:01:07,432 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 07:01:24] 2025-12-03 06:01:07,760 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 07:01:24] 2025-12-03 06:01:07,896 | INFO     | all job control threads have been joined
[2025-12-03 07:01:24] 2025-12-03 06:01:08,050 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 07:01:24] 2025-12-03 06:01:08,050 | INFO     | aborting loop
[2025-12-03 07:01:24] 2025-12-03 06:01:08,381 | INFO     | all data control threads have been joined
[2025-12-03 07:01:24] 2025-12-03 06:01:08,437 | INFO     | [job] retrieve thread has finished
[2025-12-03 07:01:24] 2025-12-03 06:01:08,437 | INFO     | [job] queue monitor thread has finished
[2025-12-03 07:01:24] 2025-12-03 06:01:08,555 | INFO     | [payload] validate_post thread has finished
[2025-12-03 07:01:24] 2025-12-03 06:01:08,632 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 07:01:24] 2025-12-03 06:01:08,732 | INFO     | [data] copytool_in thread has finished
[2025-12-03 07:01:24] 2025-12-03 06:01:08,792 | INFO     | all payload control threads have been joined
[2025-12-03 07:01:24] 2025-12-03 06:01:08,893 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 07:01:24] 2025-12-03 06:01:08,901 | INFO     | [job] control thread has finished
[2025-12-03 07:01:24] 2025-12-03 06:01:09,056 | INFO     | [job] job monitor thread has finished
[2025-12-03 07:01:24] 2025-12-03 06:01:09,112 | INFO     | [payload] failed_post thread has finished
[2025-12-03 07:01:24] 2025-12-03 06:01:09,385 | INFO     | [data] control thread has finished
[2025-12-03 07:01:24] 2025-12-03 06:01:09,509 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 07:01:24] 2025-12-03 06:01:09,770 | INFO     | [job] validate thread has finished
[2025-12-03 07:01:24] 2025-12-03 06:01:09,797 | INFO     | [payload] control thread has finished
[2025-12-03 07:01:24] 2025-12-03 06:01:09,834 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 07:01:24] 2025-12-03 06:01:10,638 | INFO     | [data] copytool_out thread has finished
[2025-12-03 07:01:24] 2025-12-03 06:01:11,765 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 07:01:24] 2025-12-03 06:01:17,734 | INFO     | job.realtimelogging is not enabled
[2025-12-03 07:01:24] 2025-12-03 06:01:18,273 | INFO     | [monitor] cgroup control has ended
[2025-12-03 07:01:24] 2025-12-03 06:01:18,739 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 07:01:24] 2025-12-03 06:01:19,615 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456052414208)>']
[2025-12-03 07:01:24] 2025-12-03 06:01:20,497 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 07:01:24] 2025-12-03 06:01:20,497 | INFO     | [monitor] control thread has ended
[2025-12-03 07:01:24] 2025-12-03 06:01:24,641 | INFO     | all workflow threads have been joined
[2025-12-03 07:01:24] 2025-12-03 06:01:24,641 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 07:01:24] 2025-12-03 06:01:24,641 | INFO     | traces error code: 0
[2025-12-03 07:01:24] 2025-12-03 06:01:24,641 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 07:01:24] 2025-12-03 06:01:24,698 [wrapper] ==== pilot stdout END ====
[2025-12-03 07:01:24] 2025-12-03 06:01:24,699 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 07:01:24] 2025-12-03 06:01:24,700 [wrapper] pilotpid: 12293
[2025-12-03 07:01:24] 2025-12-03 06:01:24,700 [wrapper] Pilot exit status: 0
[2025-12-03 07:01:24] 2025-12-03 06:01:24,705 [wrapper] pandaids: 6897782008
[2025-12-03 07:01:24] 2025-12-03 06:01:24,730 [wrapper] cleanup supervisor_pilot 22666 12300
[2025-12-03 07:01:24] 2025-12-03 06:01:24,731 [wrapper] Test setup, not cleaning
[2025-12-03 07:01:24] 2025-12-03 06:01:24,733 [wrapper] apfmon messages muted
[2025-12-03 07:01:24] 2025-12-03 06:01:24,734 [wrapper] ==== wrapper stdout END ====
[2025-12-03 07:01:24] 2025-12-03 06:01:24,735 [wrapper] ==== wrapper stderr END ====
[2025-12-03 07:01:24]  *** Error codes and diagnostics ***
[2025-12-03 07:01:24]     "exeErrorCode": 0,
[2025-12-03 07:01:24]     "exeErrorDiag": "",
[2025-12-03 07:01:24]     "pilotErrorCode": 0,
[2025-12-03 07:01:24]     "pilotErrorDiag": "",
[2025-12-03 07:01:24]  *** Listing of results directory ***
[2025-12-03 07:01:24] total 1066720
[2025-12-03 07:01:24] -rw------- 1 mf493845 unix-user    576529 Nov 28 11:28 pilot3.tar.gz
[2025-12-03 07:01:24] -rwx------ 1 mf493845 unix-user     36292 Nov 28 11:32 runpilot2-wrapper.sh
[2025-12-03 07:01:24] -rw------- 1 mf493845 unix-user      5112 Nov 28 11:33 queuedata.json
[2025-12-03 07:01:24] -rw------- 1 mf493845 unix-user       100 Dec  3 01:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 07:01:24] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  3 01:37 run_atlas
[2025-12-03 07:01:24] -rw------- 1 mf493845 unix-user       105 Dec  3 01:37 job.xml
[2025-12-03 07:01:24] -rw-r--r-- 2 mf493845 unix-user 376481243 Dec  3 03:13 EVNT.47530775._000015.pool.root.1
[2025-12-03 07:01:24] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 03:13 start_atlas.sh
[2025-12-03 07:01:24] drwxrwx--x 2 mf493845 unix-user       100 Dec  3 03:13 shared
[2025-12-03 07:01:24] -rw-r--r-- 2 mf493845 unix-user    590118 Dec  3 03:13 input.tar.gz
[2025-12-03 07:01:24] -rw------- 1 mf493845 unix-user      6391 Dec  3 03:13 init_data.xml
[2025-12-03 07:01:24] -rw------- 1 mf493845 unix-user         0 Dec  3 03:13 boinc_setup_complete
[2025-12-03 07:01:24] -rw------- 1 mf493845 unix-user      8192 Dec  3 03:13 boinc_mmap_file
[2025-12-03 07:01:24] -rw------- 1 mf493845 unix-user         0 Dec  3 03:13 boinc_lockfile
[2025-12-03 07:01:24] -rw------- 1 mf493845 unix-user      2878 Dec  3 03:13 pandaJob.out
[2025-12-03 07:01:24] -rw------- 1 mf493845 unix-user    989300 Dec  3 03:13 agis_schedconf.cvmfs.json
[2025-12-03 07:01:24] drwx------ 5 mf493845 unix-user       440 Dec  3 03:13 pilot3
[2025-12-03 07:01:24] -rw------- 1 mf493845 unix-user        95 Dec  3 07:00 pilot_heartbeat.json
[2025-12-03 07:01:24] -rw------- 1 mf493845 unix-user 704721089 Dec  3 07:00 HITS.47530783._000149.pool.root.1
[2025-12-03 07:01:24] -rw------- 1 mf493845 unix-user      1023 Dec  3 07:00 memory_monitor_summary.json
[2025-12-03 07:01:24] -rw------- 1 mf493845 unix-user   1516240 Dec  3 07:01 agis_ddmendpoints.agis.ALL.json
[2025-12-03 07:01:24] -rw------- 1 mf493845 unix-user   1631949 Dec  3 07:01 log.47530783._000149.job.log.tgz.1
[2025-12-03 07:01:24] -rw------- 1 mf493845 unix-user     27741 Dec  3 07:01 heartbeat.json
[2025-12-03 07:01:24] -rw------- 1 mf493845 unix-user      4638 Dec  3 07:01 pilotlog.txt
[2025-12-03 07:01:24] -rw------- 1 mf493845 unix-user   1964721 Dec  3 07:01 log.47530783._000149.job.log.1
[2025-12-03 07:01:24] -rw------- 1 mf493845 unix-user       353 Dec  3 07:01 output.list
[2025-12-03 07:01:24] -rw------- 1 mf493845 unix-user       620 Dec  3 07:01 runtime_log
[2025-12-03 07:01:24] -rw------- 1 mf493845 unix-user   3635200 Dec  3 07:01 result.tar.gz
[2025-12-03 07:01:24] -rw------- 1 mf493845 unix-user       651 Dec  3 07:01 vWuMDm4wAj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm5fOKDm0NRPYm.diag
[2025-12-03 07:01:24] -rw------- 1 mf493845 unix-user      9221 Dec  3 07:01 runtime_log.err
[2025-12-03 07:01:24] -rw------- 1 mf493845 unix-user     21910 Dec  3 07:01 stderr.txt
[2025-12-03 07:01:24] HITS file was successfully produced:
[2025-12-03 07:01:24] -rw------- 1 mf493845 unix-user 704721089 Dec  3 07:00 shared/HITS.pool.root.1
[2025-12-03 07:01:24]  *** Contents of shared directory: ***
[2025-12-03 07:01:24] total 1060016
[2025-12-03 07:01:24] -rw-r--r-- 2 mf493845 unix-user 376481243 Dec  3 03:13 ATLAS.root_0
[2025-12-03 07:01:24] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 03:13 start_atlas.sh
[2025-12-03 07:01:24] -rw-r--r-- 2 mf493845 unix-user    590118 Dec  3 03:13 input.tar.gz
[2025-12-03 07:01:24] -rw------- 1 mf493845 unix-user 704721089 Dec  3 07:00 HITS.pool.root.1
[2025-12-03 07:01:24] -rw------- 1 mf493845 unix-user   3635200 Dec  3 07:01 result.tar.gz
07:01:26 (3253): run_atlas exited; CPU time 103534.765361
07:01:26 (3253): called boinc_finish(0)

</stderr_txt>
]]>

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