Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:56:02 (2081563): wrapper (7.7.26015): starting
18:56:02 (2081563): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 18:56:02] Arguments: --nthreads 8
[2025-12-02 18:56:02] Threads: 8
[2025-12-02 18:56:02] Checking for CVMFS
[2025-12-02 18:56:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 18:56:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 18:56:03] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 18:56:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 18:56:25] 2.13.3.0 7314 39317 307004 153574 2 955 27575431 40960000 67106 16776704 0 592984633 99.748 378742069 48413 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-02 18:56:25] CVMFS is ok
[2025-12-02 18:56:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 18:56:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 18:56:25] Further information can be found at the LHC@home message board.
[2025-12-02 18:56:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 18:56:25] Checking for apptainer binary...
[2025-12-02 18:56:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 18:56:25] Running /usr/bin/apptainer --version
[2025-12-02 18:56:25] apptainer version 1.4.4-1.el9
[2025-12-02 18:56:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 18:56:25] c8-16-1.aglt2.org
[2025-12-02 18:56:25] apptainer works
[2025-12-02 18:56:25] Set ATHENA_PROC_NUMBER=8
[2025-12-02 18:56:25] Set ATHENA_CORE_NUMBER=8
[2025-12-02 18:56:26] Starting ATLAS job with PandaID=6895340440
[2025-12-02 18:56:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 06:54:44]  *** The last 200 lines of the pilot log: ***
[2025-12-03 06:54:44] 2025-12-03 11:53:55,306 | INFO     | time since job start (42945s) is within the limit (172800.0s)
[2025-12-03 06:54:44] 2025-12-03 11:53:56,245 | INFO     | monitor loop #2447: job 0:6895340440 is in state 'finished'
[2025-12-03 06:54:44] 2025-12-03 11:53:56,245 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 06:54:44] 2025-12-03 11:53:57,313 | INFO     | time since job start (42947s) is within the limit (172800.0s)
[2025-12-03 06:54:44] 2025-12-03 11:53:58,750 | INFO     | monitor loop #2448: job 0:6895340440 is in state 'finished'
[2025-12-03 06:54:44] 2025-12-03 11:53:58,750 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 06:54:44] 2025-12-03 11:53:59,323 | INFO     | time since job start (42949s) is within the limit (172800.0s)
[2025-12-03 06:54:44] 2025-12-03 11:54:01,256 | INFO     | monitor loop #2449: job 0:6895340440 is in state 'finished'
[2025-12-03 06:54:44] 2025-12-03 11:54:01,256 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 06:54:44] 2025-12-03 11:54:01,330 | INFO     | time since job start (42951s) is within the limit (172800.0s)
[2025-12-03 06:54:44] 2025-12-03 11:54:03,336 | INFO     | time since job start (42953s) is within the limit (172800.0s)
[2025-12-03 06:54:44] 2025-12-03 11:54:03,763 | INFO     | monitor loop #2450: job 0:6895340440 is in state 'finished'
[2025-12-03 06:54:44] 2025-12-03 11:54:03,763 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 06:54:44] 2025-12-03 11:54:05,344 | INFO     | time since job start (42955s) is within the limit (172800.0s)
[2025-12-03 06:54:44] 2025-12-03 11:54:06,276 | INFO     | monitor loop #2451: job 0:6895340440 is in state 'finished'
[2025-12-03 06:54:44] 2025-12-03 11:54:06,276 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 06:54:44] 2025-12-03 11:54:07,367 | INFO     | time since job start (42957s) is within the limit (172800.0s)
[2025-12-03 06:54:44] 2025-12-03 11:54:07,523 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-03 06:54:44] 2025-12-03 11:54:07,532 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.988812500001
[2025-12-03 06:54:44] 2025-12-03 11:54:07,559 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6895340440/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 06:54:44] 2025-12-03 11:54:07,560 | INFO     | extracted standard info from prmon json
[2025-12-03 06:54:44] 2025-12-03 11:54:07,560 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 06:54:44] 2025-12-03 11:54:07,560 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 06:54:44] 2025-12-03 11:54:07,574 | INFO     | fitting pss+swap vs Time
[2025-12-03 06:54:44] 2025-12-03 11:54:07,575 | INFO     | sum of square deviations: 106355766809.10857
[2025-12-03 06:54:44] 2025-12-03 11:54:07,585 | INFO     | sum of deviations: 468159772234.1069
[2025-12-03 06:54:44] 2025-12-03 11:54:07,585 | INFO     | mean x: 1764741456.8114285
[2025-12-03 06:54:44] 2025-12-03 11:54:07,585 | INFO     | mean y: 2779502.5614285716
[2025-12-03 06:54:44] 2025-12-03 11:54:07,585 | INFO     | intersect: -7765308521.812329
[2025-12-03 06:54:44] 2025-12-03 11:54:07,586 | INFO     | chi2: 32.42200260055527
[2025-12-03 06:54:44] 2025-12-03 11:54:07,590 | INFO     | sum of square deviations: 104093176455.44768
[2025-12-03 06:54:44] 2025-12-03 11:54:07,600 | INFO     | sum of deviations: 698949897945.39
[2025-12-03 06:54:44] 2025-12-03 11:54:07,600 | INFO     | mean x: 1764741304.3208632
[2025-12-03 06:54:44] 2025-12-03 11:54:07,600 | INFO     | mean y: 2795055.0834532375
[2025-12-03 06:54:44] 2025-12-03 11:54:07,601 | INFO     | intersect: -11846836174.904137
[2025-12-03 06:54:44] 2025-12-03 11:54:07,601 | INFO     | chi2: 28.84583178295807
[2025-12-03 06:54:44] 2025-12-03 11:54:07,601 | INFO     | current chi2=28.84583178295807 (change=11.030073810233892 %)
[2025-12-03 06:54:44] 2025-12-03 11:54:07,601 | INFO     | right removable region: 694
[2025-12-03 06:54:44] 2025-12-03 11:54:07,601 | INFO     | sum of square deviations: 104092616475.4477
[2025-12-03 06:54:44] 2025-12-03 11:54:07,616 | INFO     | sum of deviations: 186716087857.16943
[2025-12-03 06:54:44] 2025-12-03 11:54:07,616 | INFO     | mean x: 1764741609.3208632
[2025-12-03 06:54:44] 2025-12-03 11:54:07,616 | INFO     | mean y: 2798465.250359712
[2025-12-03 06:54:44] 2025-12-03 11:54:07,616 | INFO     | intersect: -3162706068.386542
[2025-12-03 06:54:44] 2025-12-03 11:54:07,616 | INFO     | chi2: 27.754489064845117
[2025-12-03 06:54:44] 2025-12-03 11:54:07,616 | INFO     | current chi2=27.754489064845117 (change=14.396129669147003 %)
[2025-12-03 06:54:44] 2025-12-03 11:54:07,616 | INFO     | left removable region: 10
[2025-12-03 06:54:44] 2025-12-03 11:54:07,617 | INFO     | sum of square deviations: 99227818448.94733
[2025-12-03 06:54:44] 2025-12-03 11:54:07,655 | INFO     | sum of deviations: 223297469073.89612
[2025-12-03 06:54:44] 2025-12-03 11:54:07,655 | INFO     | mean x: 1764741578.8421052
[2025-12-03 06:54:44] 2025-12-03 11:54:07,655 | INFO     | mean y: 2835592.850877193
[2025-12-03 06:54:44] 2025-12-03 11:54:07,655 | INFO     | intersect: -3968453248.167617
[2025-12-03 06:54:44] 2025-12-03 11:54:07,655 | INFO     | chi2: 19.49964873111784
[2025-12-03 06:54:44] 2025-12-03 11:54:07,656 | INFO     | current memory leak: 2.25 B/s (using 684 data points, chi2=19.50)
[2025-12-03 06:54:44] 2025-12-03 11:54:07,656 | INFO     | could have reported an average CPU frequency of 3788 MHz (27 samples)
[2025-12-03 06:54:44] 2025-12-03 11:54:07,656 | INFO     | ..............................
[2025-12-03 06:54:44] 2025-12-03 11:54:07,656 | INFO     | . Timing measurements:
[2025-12-03 06:54:44] 2025-12-03 11:54:07,656 | INFO     | . get job = 0 s
[2025-12-03 06:54:44] 2025-12-03 11:54:07,657 | INFO     | . initial setup = 5 s
[2025-12-03 06:54:44] 2025-12-03 11:54:07,657 | INFO     | . payload setup = 77 s
[2025-12-03 06:54:44] 2025-12-03 11:54:07,657 | INFO     | . stage-in = 0 s
[2025-12-03 06:54:44] 2025-12-03 11:54:07,657 | INFO     | . payload execution = 42710 s
[2025-12-03 06:54:44] 2025-12-03 11:54:07,657 | INFO     | . stage-out = 9 s
[2025-12-03 06:54:44] 2025-12-03 11:54:07,657 | INFO     | . log creation = 1 s
[2025-12-03 06:54:44] 2025-12-03 11:54:07,657 | INFO     | ..............................
[2025-12-03 06:54:44] 2025-12-03 11:54:07,988 | INFO     | 
[2025-12-03 06:54:44] 2025-12-03 11:54:07,988 | INFO     | job summary report
[2025-12-03 06:54:44] 2025-12-03 11:54:07,988 | INFO     | --------------------------------------------------
[2025-12-03 06:54:44] 2025-12-03 11:54:07,988 | INFO     | PanDA job id: 6895340440
[2025-12-03 06:54:44] 2025-12-03 11:54:07,988 | INFO     | task id: 47556137
[2025-12-03 06:54:44] 2025-12-03 11:54:07,988 | INFO     | errors: (none)
[2025-12-03 06:54:44] 2025-12-03 11:54:07,988 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 06:54:44] 2025-12-03 11:54:07,988 | INFO     | pilot state: finished 
[2025-12-03 06:54:44] 2025-12-03 11:54:07,988 | INFO     | transexitcode: 0
[2025-12-03 06:54:44] 2025-12-03 11:54:07,988 | INFO     | exeerrorcode: 0
[2025-12-03 06:54:44] 2025-12-03 11:54:07,988 | INFO     | exeerrordiag: 
[2025-12-03 06:54:44] 2025-12-03 11:54:07,989 | INFO     | exitcode: 0
[2025-12-03 06:54:44] 2025-12-03 11:54:07,989 | INFO     | exitmsg: OK
[2025-12-03 06:54:44] 2025-12-03 11:54:07,989 | INFO     | cpuconsumptiontime: 138041 s
[2025-12-03 06:54:44] 2025-12-03 11:54:07,989 | INFO     | nevents: 1000
[2025-12-03 06:54:44] 2025-12-03 11:54:07,989 | INFO     | neventsw: 0
[2025-12-03 06:54:44] 2025-12-03 11:54:07,989 | INFO     | pid: 2192787
[2025-12-03 06:54:44] 2025-12-03 11:54:07,989 | INFO     | pgrp: 2192787
[2025-12-03 06:54:44] 2025-12-03 11:54:07,989 | INFO     | corecount: 8
[2025-12-03 06:54:44] 2025-12-03 11:54:07,989 | INFO     | event service: False
[2025-12-03 06:54:44] 2025-12-03 11:54:07,989 | INFO     | sizes: {0: 2284092, 1: 2284291, 12: 2284291, 23: 2284319, 34: 2284347, 45: 2284375, 56: 2284793, 67: 2284821, 42791: 2328892, 42792: 2328891, 42802: 2337941, 42804
[2025-12-03 06:54:44] 2025-12-03 11:54:07,989 | INFO     | --------------------------------------------------
[2025-12-03 06:54:44] 2025-12-03 11:54:07,989 | INFO     | 
[2025-12-03 06:54:44] 2025-12-03 11:54:07,989 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-12-03 06:54:44] 2025-12-03 11:54:08,097 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 06:54:44] 2025-12-03 11:54:08,098 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 06:54:44] 2025-12-03 11:54:08,098 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 06:54:44] 2025-12-03 11:54:08,098 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 06:54:44] 2025-12-03 11:54:08,098 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 06:54:44] 2025-12-03 11:54:08,098 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 06:54:44] 2025-12-03 11:54:08,098 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 06:54:44] 2025-12-03 11:54:08,098 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 06:54:44] 2025-12-03 11:54:08,098 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 06:54:44] 2025-12-03 11:54:08,098 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 06:54:44] 2025-12-03 11:54:08,098 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 06:54:44] 2025-12-03 11:54:08,098 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 06:54:44] 2025-12-03 11:54:08,098 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 06:54:44] 2025-12-03 11:54:08,098 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 06:54:44] 2025-12-03 11:54:08,098 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 06:54:44] 2025-12-03 11:54:08,098 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 06:54:44] 2025-12-03 11:54:08,098 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 06:54:44] 2025-12-03 11:54:08,098 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 06:54:44] 2025-12-03 11:54:08,098 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 06:54:44] 2025-12-03 11:54:08,098 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 06:54:44] 2025-12-03 11:54:08,098 | INFO     | job 6895340440 has completed (purged errors)
[2025-12-03 06:54:44] 2025-12-03 11:54:08,098 | INFO     | overall cleanup function is called
[2025-12-03 06:54:44] 2025-12-03 11:54:09,123 | INFO     | --- collectZombieJob: --- 10, [2192787]
[2025-12-03 06:54:44] 2025-12-03 11:54:09,123 | INFO     | zombie collector waiting for pid 2192787
[2025-12-03 06:54:44] 2025-12-03 11:54:09,123 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 06:54:44] 2025-12-03 11:54:09,123 | INFO     | collected zombie processes
[2025-12-03 06:54:44] 2025-12-03 11:54:09,123 | INFO     | will attempt to kill all subprocesses of pid=2192787
[2025-12-03 06:54:44] 2025-12-03 11:54:10,776 | INFO     | process IDs to be killed: [2192787] (in reverse order)
[2025-12-03 06:54:44] 2025-12-03 11:54:11,006 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 06:54:44] 2025-12-03 11:54:11,006 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 06:54:44] 2025-12-03 11:54:11,078 | INFO     | did not find any defunct processes belonging to 2192787
[2025-12-03 06:54:44] 2025-12-03 11:54:11,108 | INFO     | did not find any defunct processes belonging to 2192787
[2025-12-03 06:54:44] 2025-12-03 11:54:11,124 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 06:54:44] 2025-12-03 11:54:11,124 | INFO     | ready for new job
[2025-12-03 06:54:44] 2025-12-03 11:54:11,124 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 06:54:44] 2025-12-03 11:54:11,127 | INFO     | ***************************************
[2025-12-03 06:54:44] 2025-12-03 11:54:11,127 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 06:54:44] 2025-12-03 11:54:11,127 | INFO     | ***************************************
[2025-12-03 06:54:44] 2025-12-03 11:54:11,127 | INFO     | 
[2025-12-03 06:54:44] 2025-12-03 11:54:11,131 | INFO     | architecture information:
[2025-12-03 06:54:44] 2025-12-03 11:54:11,139 | INFO     | executing command: cat /etc/os-release
[2025-12-03 06:54:44] 2025-12-03 11:54:11,186 | INFO     | cat /etc/os-release:
[2025-12-03 06:54:44] NAME="CentOS Linux"
[2025-12-03 06:54:44] VERSION="7 (Core)"
[2025-12-03 06:54:44] ID="centos"
[2025-12-03 06:54:44] ID_LIKE="rhel fedora"
[2025-12-03 06:54:44] VERSION_ID="7"
[2025-12-03 06:54:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 06:54:44] ANSI_COLOR="0;31"
[2025-12-03 06:54:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 06:54:44] HOME_URL="https://www.centos.org/"
[2025-12-03 06:54:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 06:54:44] 
[2025-12-03 06:54:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 06:54:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 06:54:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 06:54:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 06:54:44] 
[2025-12-03 06:54:44] 2025-12-03 11:54:11,186 | INFO     | ***************************************
[2025-12-03 06:54:44] 2025-12-03 11:54:11,690 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-12-03 06:54:44] 2025-12-03 11:54:11,736 | INFO     | sufficient remaining disk space (163769745408 B)
[2025-12-03 06:54:44] 2025-12-03 11:54:11,737 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 06:54:44] 2025-12-03 11:54:11,737 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 06:54:44] 2025-12-03 11:54:11,737 | INFO     | update_server=False
[2025-12-03 06:54:44] 2025-12-03 11:54:11,737 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 06:54:44] 2025-12-03 11:54:11,741 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 06:54:44] 2025-12-03 11:54:12,283 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 06:54:44] 2025-12-03 11:54:12,297 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 06:54:44] 2025-12-03 11:54:12,297 | INFO     | aborting loop
[2025-12-03 06:54:44] 2025-12-03 11:54:12,467 | INFO     | all payload control threads have been joined
[2025-12-03 06:54:44] 2025-12-03 11:54:12,477 | INFO     | all data control threads have been joined
[2025-12-03 06:54:44] 2025-12-03 11:54:12,743 | INFO     | [job] retrieve thread has finished
[2025-12-03 06:54:44] 2025-12-03 11:54:12,783 | INFO     | all job control threads have been joined
[2025-12-03 06:54:44] 2025-12-03 11:54:12,836 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 06:54:44] 2025-12-03 11:54:12,847 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 06:54:44] 2025-12-03 11:54:12,906 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 06:54:44] 2025-12-03 11:54:12,914 | INFO     | [data] copytool_in thread has finished
[2025-12-03 06:54:44] 2025-12-03 11:54:13,007 | INFO     | [job] validate thread has finished
[2025-12-03 06:54:44] 2025-12-03 11:54:13,008 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 06:54:44] 2025-12-03 11:54:13,304 | INFO     | [job] job monitor thread has finished
[2025-12-03 06:54:44] 2025-12-03 11:54:13,473 | INFO     | [payload] control thread has finished
[2025-12-03 06:54:44] 2025-12-03 11:54:13,483 | INFO     | [data] control thread has finished
[2025-12-03 06:54:44] 2025-12-03 11:54:13,639 | INFO     | [payload] validate_post thread has finished
[2025-12-03 06:54:44] 2025-12-03 11:54:13,789 | INFO     | [job] control thread has finished
[2025-12-03 06:54:44] 2025-12-03 11:54:13,870 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 06:54:44] 2025-12-03 11:54:14,013 | INFO     | [job] queue monitor thread has finished
[2025-12-03 06:54:44] 2025-12-03 11:54:14,158 | INFO     | [payload] failed_post thread has finished
[2025-12-03 06:54:44] 2025-12-03 11:54:14,292 | INFO     | [data] copytool_out thread has finished
[2025-12-03 06:54:44] 2025-12-03 11:54:15,749 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 06:54:44] 2025-12-03 11:54:26,774 | INFO     | [monitor] cgroup control has ended
[2025-12-03 06:54:44] 2025-12-03 11:54:27,550 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140535436535616)>', '<ExcThread(monitor, started 140534928623360)>']
[2025-12-03 06:54:44] 2025-12-03 11:54:32,595 | INFO     | all workflow threads have been joined
[2025-12-03 06:54:44] 2025-12-03 11:54:32,595 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 06:54:44] 2025-12-03 11:54:32,595 | INFO     | traces error code: 0
[2025-12-03 06:54:44] 2025-12-03 11:54:32,596 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 06:54:44] 2025-12-03 11:54:42,170 | INFO     | PID=2122205 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-03 06:54:44] 2025-12-03 11:54:42,170 | INFO     | .. there are 40 such processes running
[2025-12-03 06:54:44] 2025-12-03 11:54:42,174 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 06:54:44] 2025-12-03 11:54:42,174 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 06:54:44] 2025-12-03 11:54:42,174 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 06:54:44] 2025-12-03 11:54:42,174 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 06:54:44] 2025-12-03 11:54:42,174 | INFO     | [monitor] control thread has ended
[2025-12-03 06:54:44] 2025-12-03 11:54:42,508 [wrapper] ==== pilot stdout END ====
[2025-12-03 06:54:44] 2025-12-03 11:54:42,577 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 06:54:44] 2025-12-03 11:54:42,618 [wrapper] pilotpid: 2122205
[2025-12-03 06:54:44] 2025-12-03 11:54:42,676 [wrapper] Pilot exit status: 0
[2025-12-03 06:54:44] 2025-12-03 11:54:42,754 [wrapper] pandaids: 6895340440
[2025-12-03 06:54:44] 2025-12-03 11:54:43,354 [wrapper] cleanup supervisor_pilot 2213146 2122206
[2025-12-03 06:54:44] 2025-12-03 11:54:43,369 [wrapper] Test setup, not cleaning
[2025-12-03 06:54:44] 2025-12-03 11:54:43,388 [wrapper] apfmon messages muted
[2025-12-03 06:54:44] 2025-12-03 11:54:43,409 [wrapper] ==== wrapper stdout END ====
[2025-12-03 06:54:44] 2025-12-03 11:54:43,461 [wrapper] ==== wrapper stderr END ====
[2025-12-03 06:54:44]  *** Error codes and diagnostics ***
[2025-12-03 06:54:44]     "exeErrorCode": 0,
[2025-12-03 06:54:44]     "exeErrorDiag": "",
[2025-12-03 06:54:44]     "pilotErrorCode": 0,
[2025-12-03 06:54:44]     "pilotErrorDiag": "",
[2025-12-03 06:54:44]  *** Listing of results directory ***
[2025-12-03 06:54:44] total 1317212
[2025-12-03 06:54:44] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 07:54 pilot3.tar.gz
[2025-12-03 06:54:44] -rwx------. 1 boincer umatlas     36292 Nov 22 08:27 runpilot2-wrapper.sh
[2025-12-03 06:54:44] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 08:27 queuedata.json
[2025-12-03 06:54:44] -rw-r--r--. 1 boincer umatlas       100 Dec  2 18:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 06:54:44] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  2 18:56 run_atlas
[2025-12-03 06:54:44] -rw-r--r--. 1 boincer umatlas       105 Dec  2 18:56 job.xml
[2025-12-03 06:54:44] -rw-r--r--. 2 boincer umatlas 411712461 Dec  2 18:56 EVNT.47483658._000385.pool.root.1
[2025-12-03 06:54:44] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 18:56 start_atlas.sh
[2025-12-03 06:54:44] drwxrwx--x. 2 boincer umatlas      4096 Dec  2 18:56 shared
[2025-12-03 06:54:44] -rw-r--r--. 2 boincer umatlas    590097 Dec  2 18:56 input.tar.gz
[2025-12-03 06:54:44] -rw-r--r--. 1 boincer umatlas         0 Dec  2 18:56 boinc_lockfile
[2025-12-03 06:54:44] -rw-r--r--. 1 boincer umatlas      2784 Dec  2 18:56 pandaJob.out
[2025-12-03 06:54:44] -rw-------. 1 boincer umatlas        57 Dec  2 18:56 setup.sh.local
[2025-12-03 06:54:44] -rw-------. 1 boincer umatlas    989284 Dec  2 18:58 agis_schedconf.cvmfs.json
[2025-12-03 06:54:44] drwx------. 5 boincer umatlas      4096 Dec  2 18:58 pilot3
[2025-12-03 06:54:44] -rw-r--r--. 1 boincer umatlas       533 Dec  3 06:25 boinc_task_state.xml
[2025-12-03 06:54:44] -rw-r--r--. 1 boincer umatlas      7175 Dec  3 06:45 init_data.xml
[2025-12-03 06:54:44] -rw-------. 1 boincer umatlas 918898570 Dec  3 06:52 HITS.47556137._003809.pool.root.1
[2025-12-03 06:54:44] -rw-------. 1 boincer umatlas      1075 Dec  3 06:53 memory_monitor_summary.json
[2025-12-03 06:54:44] -rw-------. 1 boincer umatlas   1516240 Dec  3 06:53 agis_ddmendpoints.agis.ALL.json
[2025-12-03 06:54:44] -rw-------. 1 boincer umatlas   1904891 Dec  3 06:53 log.47556137._003809.job.log.tgz.1
[2025-12-03 06:54:44] -rw-------. 1 boincer umatlas      8651 Dec  3 06:54 heartbeat.json
[2025-12-03 06:54:44] -rw-------. 1 boincer umatlas        95 Dec  3 06:54 pilot_heartbeat.json
[2025-12-03 06:54:44] -rw-------. 1 boincer umatlas       823 Dec  3 06:54 pilotlog.txt
[2025-12-03 06:54:44] -rw-r--r--. 1 boincer umatlas      8192 Dec  3 06:54 boinc_mmap_file
[2025-12-03 06:54:44] -rw-------. 1 boincer umatlas   5244402 Dec  3 06:54 log.47556137._003809.job.log.1
[2025-12-03 06:54:44] -rw-r--r--. 1 boincer umatlas        29 Dec  3 06:54 wrapper_checkpoint.txt
[2025-12-03 06:54:44] -rw-------. 1 boincer umatlas       353 Dec  3 06:54 output.list
[2025-12-03 06:54:44] -rw-r--r--. 1 boincer umatlas       620 Dec  3 06:54 runtime_log
[2025-12-03 06:54:44] -rw-------. 1 boincer umatlas   7168000 Dec  3 06:54 result.tar.gz
[2025-12-03 06:54:44] -rw-r--r--. 1 boincer umatlas      9338 Dec  3 06:54 runtime_log.err
[2025-12-03 06:54:44] -rw-------. 1 boincer umatlas       665 Dec  3 06:54 ABgMDmhp2g8n9Rq4apOajLDm4fhM0noT9bVo0NGKDme7HKDmfz1NYn.diag
[2025-12-03 06:54:44] -rw-r--r--. 1 boincer umatlas     21815 Dec  3 06:54 stderr.txt
[2025-12-03 06:54:44] HITS file was successfully produced:
[2025-12-03 06:54:44] -rw-------. 1 boincer umatlas 918898570 Dec  3 06:52 shared/HITS.pool.root.1
[2025-12-03 06:54:44]  *** Contents of shared directory: ***
[2025-12-03 06:54:44] total 1307032
[2025-12-03 06:54:44] -rw-r--r--. 2 boincer umatlas 411712461 Dec  2 18:56 ATLAS.root_0
[2025-12-03 06:54:44] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 18:56 start_atlas.sh
[2025-12-03 06:54:44] -rw-r--r--. 2 boincer umatlas    590097 Dec  2 18:56 input.tar.gz
[2025-12-03 06:54:44] -rw-------. 1 boincer umatlas 918898570 Dec  3 06:52 HITS.pool.root.1
[2025-12-03 06:54:44] -rw-------. 1 boincer umatlas   7168000 Dec  3 06:54 result.tar.gz
06:54:45 (2081563): run_atlas exited; CPU time 138980.715099
06:54:45 (2081563): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN