Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
03:31:30 (24625): wrapper (7.7.26015): starting
03:31:30 (24625): wrapper: running run_atlas (--nthreads 8)
[2025-12-03 03:31:30] Arguments: --nthreads 8
[2025-12-03 03:31:30] Threads: 8
[2025-12-03 03:31:30] Checking for CVMFS
[2025-12-03 03:31:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 03:31:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 03:31:30] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 03:31:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 03:31:30] 2.11.0.0 4400 75013 87184 153577 0 60 3943721 4096000 916 130560 1 11697381 99.626 9605294 817 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-03 03:31:30] CVMFS is ok
[2025-12-03 03:31:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-03 03:31:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-03 03:31:30] Further information can be found at the LHC@home message board.
[2025-12-03 03:31:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 03:31:30] Checking for apptainer binary...
[2025-12-03 03:31:30] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-03 03:31:30] apptainer is not installed, using version from CVMFS
[2025-12-03 03:31:30] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 03:31:31] WARNING: Environment variable TMPDIR already has value [/tmp/job_10946747/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node344
[2025-12-03 03:31:31] apptainer works
[2025-12-03 03:31:31] Set ATHENA_PROC_NUMBER=8
[2025-12-03 03:31:31] Set ATHENA_CORE_NUMBER=8
[2025-12-03 03:31:31] Starting ATLAS job with PandaID=6895365198
[2025-12-03 03:31:31] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10946747/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 08:05:09]  *** The last 200 lines of the pilot log: ***
[2025-12-03 08:05:09] 2025-12-03 07:04:15,363 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 08:05:09] 2025-12-03 07:04:16,426 | INFO     | time since job start (16360s) is within the limit (172800.0s)
[2025-12-03 08:05:09] 2025-12-03 07:04:17,006 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-03 08:05:09] 2025-12-03 07:04:17,866 | INFO     | monitor loop #1193: job 0:6895365198 is in state 'finished'
[2025-12-03 08:05:09] 2025-12-03 07:04:17,866 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 08:05:09] 2025-12-03 07:04:17,887 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 08:05:09] 2025-12-03 07:04:17,887 | INFO     | job 6895365198 has state=finished
[2025-12-03 08:05:09] 2025-12-03 07:04:17,887 | INFO     | preparing for final server update for job 6895365198 in state='finished'
[2025-12-03 08:05:09] 2025-12-03 07:04:17,888 | INFO     | this job has now completed (state=finished)
[2025-12-03 08:05:09] 2025-12-03 07:04:17,888 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-03 08:05:09] 2025-12-03 07:04:17,888 | INFO     | log transfer has been attempted: DONE
[2025-12-03 08:05:09] 2025-12-03 07:04:17,888 | INFO     | job 6895365198 has finished - writing final server update
[2025-12-03 08:05:09] 2025-12-03 07:04:17,888 | INFO     | total number of processed events: 1000 (read)
[2025-12-03 08:05:09] 2025-12-03 07:04:17,888 | INFO     | executing command: lscpu
[2025-12-03 08:05:09] 2025-12-03 07:04:17,919 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-03 08:05:09] 2025-12-03 07:04:18,432 | INFO     | time since job start (16362s) is within the limit (172800.0s)
[2025-12-03 08:05:09] 2025-12-03 07:04:19,684 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 08:05:09] 2025-12-03 07:04:19,689 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2769.930671875
[2025-12-03 08:05:09] 2025-12-03 07:04:19,694 | INFO     | using path: /tmp/job_10946747/atlas/pilot/slots/0/PanDA_Pilot-6895365198/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 08:05:09] 2025-12-03 07:04:19,694 | INFO     | extracted standard info from prmon json
[2025-12-03 08:05:09] 2025-12-03 07:04:19,694 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 08:05:09] 2025-12-03 07:04:19,694 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 08:05:09] 2025-12-03 07:04:19,697 | INFO     | fitting pss+swap vs Time
[2025-12-03 08:05:09] 2025-12-03 07:04:19,697 | INFO     | sum of square deviations: 5968658887.0
[2025-12-03 08:05:09] 2025-12-03 07:04:19,698 | INFO     | sum of deviations: 624496951644.9999
[2025-12-03 08:05:09] 2025-12-03 07:04:19,698 | INFO     | mean x: 1764737258.5
[2025-12-03 08:05:09] 2025-12-03 07:04:19,698 | INFO     | mean y: 3189069.8880597013
[2025-12-03 08:05:09] 2025-12-03 07:04:19,698 | INFO     | intersect: -184640138560.70706
[2025-12-03 08:05:09] 2025-12-03 07:04:19,699 | INFO     | chi2: 5.678713607139058
[2025-12-03 08:05:09] 2025-12-03 07:04:19,699 | INFO     | sum of square deviations: 5640782972.0
[2025-12-03 08:05:09] 2025-12-03 07:04:19,700 | INFO     | sum of deviations: 632838107993.0
[2025-12-03 08:05:09] 2025-12-03 07:04:19,700 | INFO     | mean x: 1764737106.0
[2025-12-03 08:05:09] 2025-12-03 07:04:19,700 | INFO     | mean y: 3192601.053231939
[2025-12-03 08:05:09] 2025-12-03 07:04:19,700 | INFO     | intersect: -197982246088.87238
[2025-12-03 08:05:09] 2025-12-03 07:04:19,700 | INFO     | chi2: 4.393547860868907
[2025-12-03 08:05:09] 2025-12-03 07:04:19,700 | INFO     | current chi2=4.393547860868907 (change=22.631282983781592 %)
[2025-12-03 08:05:09] 2025-12-03 07:04:19,700 | INFO     | right removable region: 262
[2025-12-03 08:05:09] 2025-12-03 07:04:19,700 | INFO     | sum of square deviations: 5640782972.0
[2025-12-03 08:05:09] 2025-12-03 07:04:19,701 | INFO     | sum of deviations: 565860170518.0
[2025-12-03 08:05:09] 2025-12-03 07:04:19,701 | INFO     | mean x: 1764737411.0
[2025-12-03 08:05:09] 2025-12-03 07:04:19,701 | INFO     | mean y: 3216153.049429658
[2025-12-03 08:05:09] 2025-12-03 07:04:19,701 | INFO     | intersect: -177027989845.27164
[2025-12-03 08:05:09] 2025-12-03 07:04:19,702 | INFO     | chi2: 4.29694044951753
[2025-12-03 08:05:09] 2025-12-03 07:04:19,702 | INFO     | current chi2=4.29694044951753 (change=24.332502978921433 %)
[2025-12-03 08:05:09] 2025-12-03 07:04:19,702 | INFO     | left removable region: 10
[2025-12-03 08:05:09] 2025-12-03 07:04:19,702 | INFO     | sum of square deviations: 4962187923.0
[2025-12-03 08:05:09] 2025-12-03 07:04:19,703 | INFO     | sum of deviations: 539510880961.50006
[2025-12-03 08:05:09] 2025-12-03 07:04:19,703 | INFO     | mean x: 1764737380.5
[2025-12-03 08:05:09] 2025-12-03 07:04:19,703 | INFO     | mean y: 3223069.01984127
[2025-12-03 08:05:09] 2025-12-03 07:04:19,703 | INFO     | intersect: -191866781371.206
[2025-12-03 08:05:09] 2025-12-03 07:04:19,703 | INFO     | chi2: 2.8536487650202282
[2025-12-03 08:05:09] 2025-12-03 07:04:19,703 | INFO     | current memory leak: 108.72 B/s (using 252 data points, chi2=2.85)
[2025-12-03 08:05:09] 2025-12-03 07:04:19,703 | INFO     | could have reported an average CPU frequency of 2853 MHz (12 samples)
[2025-12-03 08:05:09] 2025-12-03 07:04:19,704 | INFO     | ..............................
[2025-12-03 08:05:09] 2025-12-03 07:04:19,704 | INFO     | . Timing measurements:
[2025-12-03 08:05:09] 2025-12-03 07:04:19,704 | INFO     | . get job = 0 s
[2025-12-03 08:05:09] 2025-12-03 07:04:19,704 | INFO     | . initial setup = 1 s
[2025-12-03 08:05:09] 2025-12-03 07:04:19,704 | INFO     | . payload setup = 2 s
[2025-12-03 08:05:09] 2025-12-03 07:04:19,704 | INFO     | . stage-in = 0 s
[2025-12-03 08:05:09] 2025-12-03 07:04:19,704 | INFO     | . payload execution = 16336 s
[2025-12-03 08:05:09] 2025-12-03 07:04:19,704 | INFO     | . stage-out = 1 s
[2025-12-03 08:05:09] 2025-12-03 07:04:19,704 | INFO     | . log creation = 0 s
[2025-12-03 08:05:09] 2025-12-03 07:04:19,704 | INFO     | ..............................
[2025-12-03 08:05:09] 2025-12-03 07:04:20,148 | INFO     | 
[2025-12-03 08:05:09] 2025-12-03 07:04:20,148 | INFO     | job summary report
[2025-12-03 08:05:09] 2025-12-03 07:04:20,148 | INFO     | --------------------------------------------------
[2025-12-03 08:05:09] 2025-12-03 07:04:20,148 | INFO     | PanDA job id: 6895365198
[2025-12-03 08:05:09] 2025-12-03 07:04:20,148 | INFO     | task id: 47556137
[2025-12-03 08:05:09] 2025-12-03 07:04:20,148 | INFO     | errors: (none)
[2025-12-03 08:05:09] 2025-12-03 07:04:20,148 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 08:05:09] 2025-12-03 07:04:20,148 | INFO     | pilot state: finished 
[2025-12-03 08:05:09] 2025-12-03 07:04:20,148 | INFO     | transexitcode: 0
[2025-12-03 08:05:09] 2025-12-03 07:04:20,149 | INFO     | exeerrorcode: 0
[2025-12-03 08:05:09] 2025-12-03 07:04:20,149 | INFO     | exeerrordiag: 
[2025-12-03 08:05:09] 2025-12-03 07:04:20,149 | INFO     | exitcode: 0
[2025-12-03 08:05:09] 2025-12-03 07:04:20,149 | INFO     | exitmsg: OK
[2025-12-03 08:05:09] 2025-12-03 07:04:20,149 | INFO     | cpuconsumptiontime: 121830 s
[2025-12-03 08:05:09] 2025-12-03 07:04:20,149 | INFO     | nevents: 1000
[2025-12-03 08:05:09] 2025-12-03 07:04:20,149 | INFO     | neventsw: 0
[2025-12-03 08:05:09] 2025-12-03 07:04:20,149 | INFO     | pid: 5580
[2025-12-03 08:05:09] 2025-12-03 07:04:20,149 | INFO     | pgrp: 5580
[2025-12-03 08:05:09] 2025-12-03 07:04:20,149 | INFO     | corecount: 8
[2025-12-03 08:05:09] 2025-12-03 07:04:20,149 | INFO     | event service: False
[2025-12-03 08:05:09] 2025-12-03 07:04:20,149 | INFO     | sizes: {0: 2284159, 1: 2284469, 2: 2284731, 11: 2284759, 16343: 2317259, 16346: 2326283, 16348: 2326467, 16351: 2326713}
[2025-12-03 08:05:09] 2025-12-03 07:04:20,149 | INFO     | --------------------------------------------------
[2025-12-03 08:05:09] 2025-12-03 07:04:20,149 | INFO     | 
[2025-12-03 08:05:09] 2025-12-03 07:04:20,149 | INFO     | executing command: ls -lF /tmp/job_10946747/atlas/pilot/slots/0
[2025-12-03 08:05:09] 2025-12-03 07:04:20,160 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 08:05:09] 2025-12-03 07:04:20,160 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 08:05:09] 2025-12-03 07:04:20,160 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 08:05:09] 2025-12-03 07:04:20,160 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 08:05:09] 2025-12-03 07:04:20,160 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 08:05:09] 2025-12-03 07:04:20,160 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 08:05:09] 2025-12-03 07:04:20,160 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 08:05:09] 2025-12-03 07:04:20,160 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 08:05:09] 2025-12-03 07:04:20,160 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 08:05:09] 2025-12-03 07:04:20,160 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 08:05:09] 2025-12-03 07:04:20,161 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 08:05:09] 2025-12-03 07:04:20,161 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 08:05:09] 2025-12-03 07:04:20,161 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 08:05:09] 2025-12-03 07:04:20,161 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 08:05:09] 2025-12-03 07:04:20,161 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 08:05:09] 2025-12-03 07:04:20,161 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 08:05:09] 2025-12-03 07:04:20,161 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 08:05:09] 2025-12-03 07:04:20,161 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 08:05:09] 2025-12-03 07:04:20,161 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 08:05:09] 2025-12-03 07:04:20,161 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 08:05:09] 2025-12-03 07:04:20,161 | INFO     | job 6895365198 has completed (purged errors)
[2025-12-03 08:05:09] 2025-12-03 07:04:20,161 | INFO     | overall cleanup function is called
[2025-12-03 08:05:09] 2025-12-03 07:04:21,168 | INFO     | --- collectZombieJob: --- 10, [5580]
[2025-12-03 08:05:09] 2025-12-03 07:04:21,169 | INFO     | zombie collector waiting for pid 5580
[2025-12-03 08:05:09] 2025-12-03 07:04:21,169 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 08:05:09] 2025-12-03 07:04:21,169 | INFO     | collected zombie processes
[2025-12-03 08:05:09] 2025-12-03 07:04:21,169 | INFO     | will attempt to kill all subprocesses of pid=5580
[2025-12-03 08:05:09] 2025-12-03 07:04:21,279 | INFO     | process IDs to be killed: [5580] (in reverse order)
[2025-12-03 08:05:09] 2025-12-03 07:04:21,320 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 08:05:09] 2025-12-03 07:04:21,320 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 08:05:09] 2025-12-03 07:04:21,324 | INFO     | did not find any defunct processes belonging to 5580
[2025-12-03 08:05:09] 2025-12-03 07:04:21,327 | INFO     | did not find any defunct processes belonging to 5580
[2025-12-03 08:05:09] 2025-12-03 07:04:21,327 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 08:05:09] 2025-12-03 07:04:21,327 | INFO     | ready for new job
[2025-12-03 08:05:09] 2025-12-03 07:04:21,328 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 08:05:09] 2025-12-03 07:04:21,329 | INFO     | ***************************************
[2025-12-03 08:05:09] 2025-12-03 07:04:21,329 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 08:05:09] 2025-12-03 07:04:21,329 | INFO     | ***************************************
[2025-12-03 08:05:09] 2025-12-03 07:04:21,329 | INFO     | 
[2025-12-03 08:05:09] 2025-12-03 07:04:21,343 | INFO     | architecture information:
[2025-12-03 08:05:09] 2025-12-03 07:04:21,343 | INFO     | executing command: cat /etc/os-release
[2025-12-03 08:05:09] 2025-12-03 07:04:21,351 | INFO     | cat /etc/os-release:
[2025-12-03 08:05:09] NAME="CentOS Linux"
[2025-12-03 08:05:09] VERSION="7 (Core)"
[2025-12-03 08:05:09] ID="centos"
[2025-12-03 08:05:09] ID_LIKE="rhel fedora"
[2025-12-03 08:05:09] VERSION_ID="7"
[2025-12-03 08:05:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 08:05:09] ANSI_COLOR="0;31"
[2025-12-03 08:05:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 08:05:09] HOME_URL="https://www.centos.org/"
[2025-12-03 08:05:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 08:05:09] 
[2025-12-03 08:05:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 08:05:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 08:05:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 08:05:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 08:05:09] 
[2025-12-03 08:05:09] 2025-12-03 07:04:21,351 | INFO     | ***************************************
[2025-12-03 08:05:09] 2025-12-03 07:04:21,854 | INFO     | executing command: df -mP /tmp/job_10946747/atlas/pilot/slots/0
[2025-12-03 08:05:09] 2025-12-03 07:04:21,862 | INFO     | sufficient remaining disk space (218238025728 B)
[2025-12-03 08:05:09] 2025-12-03 07:04:21,862 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 08:05:09] 2025-12-03 07:04:21,863 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 08:05:09] 2025-12-03 07:04:21,863 | INFO     | update_server=False
[2025-12-03 08:05:09] 2025-12-03 07:04:21,863 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 08:05:09] 2025-12-03 07:04:21,863 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 08:05:09] 2025-12-03 07:04:21,863 | INFO     | aborting loop
[2025-12-03 08:05:09] 2025-12-03 07:04:21,956 | INFO     | all data control threads have been joined
[2025-12-03 08:05:09] 2025-12-03 07:04:22,113 | INFO     | all job control threads have been joined
[2025-12-03 08:05:09] 2025-12-03 07:04:22,493 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 08:05:09] 2025-12-03 07:04:22,514 | INFO     | all payload control threads have been joined
[2025-12-03 08:05:09] 2025-12-03 07:04:22,868 | INFO     | [job] job monitor thread has finished
[2025-12-03 08:05:09] 2025-12-03 07:04:22,868 | INFO     | [job] retrieve thread has finished
[2025-12-03 08:05:09] 2025-12-03 07:04:22,879 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 08:05:09] 2025-12-03 07:04:22,961 | INFO     | [data] control thread has finished
[2025-12-03 08:05:09] 2025-12-03 07:04:23,065 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 08:05:09] 2025-12-03 07:04:23,118 | INFO     | [job] control thread has finished
[2025-12-03 08:05:09] 2025-12-03 07:04:23,169 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 08:05:09] 2025-12-03 07:04:23,255 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 08:05:09] 2025-12-03 07:04:23,519 | INFO     | [payload] control thread has finished
[2025-12-03 08:05:09] 2025-12-03 07:04:23,764 | INFO     | [job] validate thread has finished
[2025-12-03 08:05:09] 2025-12-03 07:04:23,890 | INFO     | [payload] failed_post thread has finished
[2025-12-03 08:05:09] 2025-12-03 07:04:24,000 | INFO     | [data] copytool_in thread has finished
[2025-12-03 08:05:09] 2025-12-03 07:04:24,377 | INFO     | [payload] validate_post thread has finished
[2025-12-03 08:05:09] 2025-12-03 07:04:24,498 | INFO     | [data] copytool_out thread has finished
[2025-12-03 08:05:09] 2025-12-03 07:04:24,764 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 08:05:09] 2025-12-03 07:04:25,769 | INFO     | [job] queue monitor thread has finished
[2025-12-03 08:05:09] 2025-12-03 07:04:27,070 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 08:05:09] 2025-12-03 07:04:32,189 | INFO     | job.realtimelogging is not enabled
[2025-12-03 08:05:09] 2025-12-03 07:04:33,195 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 08:05:09] 2025-12-03 07:04:51,632 | INFO     | PID=29368 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-03 08:05:09] 2025-12-03 07:04:51,633 | INFO     | .. there are 5 such processes running
[2025-12-03 08:05:09] 2025-12-03 07:04:51,633 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 08:05:09] 2025-12-03 07:04:51,633 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 08:05:09] 2025-12-03 07:04:51,633 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 08:05:09] 2025-12-03 07:05:02,906 | INFO     | [monitor] cgroup control has ended
[2025-12-03 08:05:09] 2025-12-03 07:05:03,787 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456062920448)>']
[2025-12-03 08:05:09] 2025-12-03 07:05:04,698 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 08:05:09] 2025-12-03 07:05:04,698 | INFO     | [monitor] control thread has ended
[2025-12-03 08:05:09] 2025-12-03 07:05:08,812 | INFO     | all workflow threads have been joined
[2025-12-03 08:05:09] 2025-12-03 07:05:08,812 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 08:05:09] 2025-12-03 07:05:08,812 | INFO     | traces error code: 0
[2025-12-03 08:05:09] 2025-12-03 07:05:08,813 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 08:05:09] 2025-12-03 07:05:08,895 [wrapper] ==== pilot stdout END ====
[2025-12-03 08:05:09] 2025-12-03 07:05:08,896 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 08:05:09] 2025-12-03 07:05:08,897 [wrapper] pilotpid: 29368
[2025-12-03 08:05:09] 2025-12-03 07:05:08,898 [wrapper] Pilot exit status: 0
[2025-12-03 08:05:09] 2025-12-03 07:05:08,902 [wrapper] pandaids: 6895365198
[2025-12-03 08:05:09] 2025-12-03 07:05:08,928 [wrapper] cleanup supervisor_pilot 11771 29369
[2025-12-03 08:05:09] 2025-12-03 07:05:08,929 [wrapper] Test setup, not cleaning
[2025-12-03 08:05:09] 2025-12-03 07:05:08,931 [wrapper] apfmon messages muted
[2025-12-03 08:05:09] 2025-12-03 07:05:08,932 [wrapper] ==== wrapper stdout END ====
[2025-12-03 08:05:09] 2025-12-03 07:05:08,933 [wrapper] ==== wrapper stderr END ====
[2025-12-03 08:05:09]  *** Error codes and diagnostics ***
[2025-12-03 08:05:09]     "exeErrorCode": 0,
[2025-12-03 08:05:09]     "exeErrorDiag": "",
[2025-12-03 08:05:09]     "pilotErrorCode": 0,
[2025-12-03 08:05:09]     "pilotErrorDiag": "",
[2025-12-03 08:05:09]  *** Listing of results directory ***
[2025-12-03 08:05:09] total 1307592
[2025-12-03 08:05:09] -rw------- 1 mf493845 unix-user    576529 Nov 23 17:55 pilot3.tar.gz
[2025-12-03 08:05:09] -rwx------ 1 mf493845 unix-user     36292 Nov 23 18:04 runpilot2-wrapper.sh
[2025-12-03 08:05:09] -rw------- 1 mf493845 unix-user      5112 Nov 23 18:04 queuedata.json
[2025-12-03 08:05:09] -rw------- 1 mf493845 unix-user       100 Dec  3 01:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 08:05:09] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  3 01:47 run_atlas
[2025-12-03 08:05:09] -rw------- 1 mf493845 unix-user       105 Dec  3 01:47 job.xml
[2025-12-03 08:05:09] -rw-r--r-- 2 mf493845 unix-user 409236393 Dec  3 03:31 EVNT.47483658._000818.pool.root.1
[2025-12-03 08:05:09] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 03:31 start_atlas.sh
[2025-12-03 08:05:09] drwxrwx--x 2 mf493845 unix-user       100 Dec  3 03:31 shared
[2025-12-03 08:05:09] -rw-r--r-- 2 mf493845 unix-user    590100 Dec  3 03:31 input.tar.gz
[2025-12-03 08:05:09] -rw------- 1 mf493845 unix-user      6391 Dec  3 03:31 init_data.xml
[2025-12-03 08:05:09] -rw------- 1 mf493845 unix-user         0 Dec  3 03:31 boinc_setup_complete
[2025-12-03 08:05:09] -rw------- 1 mf493845 unix-user      8192 Dec  3 03:31 boinc_mmap_file
[2025-12-03 08:05:09] -rw------- 1 mf493845 unix-user         0 Dec  3 03:31 boinc_lockfile
[2025-12-03 08:05:09] -rw------- 1 mf493845 unix-user      2786 Dec  3 03:31 pandaJob.out
[2025-12-03 08:05:09] -rw------- 1 mf493845 unix-user    989292 Dec  3 03:31 agis_schedconf.cvmfs.json
[2025-12-03 08:05:09] drwx------ 5 mf493845 unix-user       440 Dec  3 03:31 pilot3
[2025-12-03 08:05:09] -rw------- 1 mf493845 unix-user 918026934 Dec  3 08:03 HITS.47556137._008044.pool.root.1
[2025-12-03 08:05:09] -rw------- 1 mf493845 unix-user      1025 Dec  3 08:04 memory_monitor_summary.json
[2025-12-03 08:05:09] -rw------- 1 mf493845 unix-user   1516240 Dec  3 08:04 agis_ddmendpoints.agis.ALL.json
[2025-12-03 08:05:09] -rw------- 1 mf493845 unix-user   1569963 Dec  3 08:04 log.47556137._008044.job.log.tgz.1
[2025-12-03 08:05:09] -rw------- 1 mf493845 unix-user      8605 Dec  3 08:04 heartbeat.json
[2025-12-03 08:05:09] -rw------- 1 mf493845 unix-user        95 Dec  3 08:04 pilot_heartbeat.json
[2025-12-03 08:05:09] -rw------- 1 mf493845 unix-user      4907 Dec  3 08:05 pilotlog.txt
[2025-12-03 08:05:09] -rw------- 1 mf493845 unix-user   2341131 Dec  3 08:05 log.47556137._008044.job.log.1
[2025-12-03 08:05:09] -rw------- 1 mf493845 unix-user       353 Dec  3 08:05 output.list
[2025-12-03 08:05:09] -rw------- 1 mf493845 unix-user       620 Dec  3 08:05 runtime_log
[2025-12-03 08:05:09] -rw------- 1 mf493845 unix-user   3932160 Dec  3 08:05 result.tar.gz
[2025-12-03 08:05:09] -rw------- 1 mf493845 unix-user      9221 Dec  3 08:05 runtime_log.err
[2025-12-03 08:05:09] -rw------- 1 mf493845 unix-user       651 Dec  3 08:05 McJLDmbgSh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmgeIKDmQN3s6m.diag
[2025-12-03 08:05:09] -rw------- 1 mf493845 unix-user     22202 Dec  3 08:05 stderr.txt
[2025-12-03 08:05:09] HITS file was successfully produced:
[2025-12-03 08:05:09] -rw------- 1 mf493845 unix-user 918026934 Dec  3 08:03 shared/HITS.pool.root.1
[2025-12-03 08:05:09]  *** Contents of shared directory: ***
[2025-12-03 08:05:09] total 1300596
[2025-12-03 08:05:09] -rw-r--r-- 2 mf493845 unix-user 409236393 Dec  3 03:31 ATLAS.root_0
[2025-12-03 08:05:09] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 03:31 start_atlas.sh
[2025-12-03 08:05:09] -rw-r--r-- 2 mf493845 unix-user    590100 Dec  3 03:31 input.tar.gz
[2025-12-03 08:05:09] -rw------- 1 mf493845 unix-user 918026934 Dec  3 08:03 HITS.pool.root.1
[2025-12-03 08:05:09] -rw------- 1 mf493845 unix-user   3932160 Dec  3 08:05 result.tar.gz
08:05:10 (24625): run_atlas exited; CPU time 122018.210720
08:05:10 (24625): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN