Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
03:10:14 (15544): wrapper (7.7.26015): starting
03:10:14 (15544): wrapper: running run_atlas (--nthreads 8)
[2025-12-03 03:10:14] Arguments: --nthreads 8
[2025-12-03 03:10:14] Threads: 8
[2025-12-03 03:10:14] Checking for CVMFS
[2025-12-03 03:10:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 03:10:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 03:10:14] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 03:10:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 03:10:15] 2.11.0.0 24859 75145 101444 153576 3 75 2729595 4096001 588 130560 4 9363477 99.848 3526023 374 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-03 03:10:15] CVMFS is ok
[2025-12-03 03:10:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-03 03:10:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-03 03:10:15] Further information can be found at the LHC@home message board.
[2025-12-03 03:10:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 03:10:15] Checking for apptainer binary...
[2025-12-03 03:10:15] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-03 03:10:15] apptainer is not installed, using version from CVMFS
[2025-12-03 03:10:15] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 03:10:15] WARNING: Environment variable TMPDIR already has value [/tmp/job_10946643/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node313
[2025-12-03 03:10:15] apptainer works
[2025-12-03 03:10:15] Set ATHENA_PROC_NUMBER=8
[2025-12-03 03:10:15] Set ATHENA_CORE_NUMBER=8
[2025-12-03 03:10:15] Starting ATLAS job with PandaID=6897834923
[2025-12-03 03:10:15] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10946643/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 06:57:49]  *** The last 200 lines of the pilot log: ***
[2025-12-03 06:57:49] 2025-12-03 05:56:49,261 | INFO     | PID=19309 has CPU usage=6.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-03 06:57:49] 2025-12-03 05:56:49,261 | INFO     | .. there are 6 such processes running
[2025-12-03 06:57:49] 2025-12-03 05:56:50,096 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 06:57:49] 2025-12-03 05:56:50,112 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2925.6771250000006
[2025-12-03 06:57:49] 2025-12-03 05:56:50,118 | INFO     | using path: /tmp/job_10946643/atlas/pilot/slots/0/PanDA_Pilot-6897834923/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 06:57:49] 2025-12-03 05:56:50,118 | INFO     | extracted standard info from prmon json
[2025-12-03 06:57:49] 2025-12-03 05:56:50,118 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 06:57:49] 2025-12-03 05:56:50,118 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 06:57:49] 2025-12-03 05:56:50,120 | INFO     | fitting pss+swap vs Time
[2025-12-03 06:57:49] 2025-12-03 05:56:50,120 | INFO     | sum of square deviations: 3438620752.0
[2025-12-03 06:57:49] 2025-12-03 05:56:50,121 | INFO     | sum of deviations: 121769442997.00003
[2025-12-03 06:57:49] 2025-12-03 05:56:50,121 | INFO     | mean x: 1764734610.0
[2025-12-03 06:57:49] 2025-12-03 05:56:50,121 | INFO     | mean y: 3420448.291479821
[2025-12-03 06:57:49] 2025-12-03 05:56:50,121 | INFO     | intersect: -62489877299.72027
[2025-12-03 06:57:49] 2025-12-03 05:56:50,121 | INFO     | chi2: 3.1065476616562187
[2025-12-03 06:57:49] 2025-12-03 05:56:50,121 | INFO     | sum of square deviations: 3212467674.5
[2025-12-03 06:57:49] 2025-12-03 05:56:50,122 | INFO     | sum of deviations: 158277275412.99997
[2025-12-03 06:57:49] 2025-12-03 05:56:50,122 | INFO     | mean x: 1764734457.5
[2025-12-03 06:57:49] 2025-12-03 05:56:50,122 | INFO     | mean y: 3444697.018348624
[2025-12-03 06:57:49] 2025-12-03 05:56:50,122 | INFO     | intersect: -86944468889.07324
[2025-12-03 06:57:49] 2025-12-03 05:56:50,122 | INFO     | chi2: 1.7346705199814534
[2025-12-03 06:57:49] 2025-12-03 05:56:50,122 | INFO     | current chi2=1.7346705199814534 (change=44.16082710101944 %)
[2025-12-03 06:57:49] 2025-12-03 05:56:50,123 | INFO     | sum of square deviations: 2996454322.0
[2025-12-03 06:57:49] 2025-12-03 05:56:50,123 | INFO     | sum of deviations: 147719766354.0
[2025-12-03 06:57:49] 2025-12-03 05:56:50,123 | INFO     | mean x: 1764734305.0
[2025-12-03 06:57:49] 2025-12-03 05:56:50,123 | INFO     | mean y: 3437260.7464788733
[2025-12-03 06:57:49] 2025-12-03 05:56:50,123 | INFO     | intersect: -86994765013.69774
[2025-12-03 06:57:49] 2025-12-03 05:56:50,124 | INFO     | chi2: 1.733610708885714
[2025-12-03 06:57:49] 2025-12-03 05:56:50,124 | INFO     | current chi2=1.733610708885714 (change=0.061095815230128754 %)
[2025-12-03 06:57:49] 2025-12-03 05:56:50,124 | INFO     | right removable region: 212
[2025-12-03 06:57:49] 2025-12-03 05:56:50,124 | INFO     | sum of square deviations: 3212467674.5
[2025-12-03 06:57:49] 2025-12-03 05:56:50,124 | INFO     | sum of deviations: 65210022421.000015
[2025-12-03 06:57:49] 2025-12-03 05:56:50,125 | INFO     | mean x: 1764734762.5
[2025-12-03 06:57:49] 2025-12-03 05:56:50,125 | INFO     | mean y: 3458267.853211009
[2025-12-03 06:57:49] 2025-12-03 05:56:50,125 | INFO     | intersect: -35818970185.89126
[2025-12-03 06:57:49] 2025-12-03 05:56:50,125 | INFO     | chi2: 1.4420054361720172
[2025-12-03 06:57:49] 2025-12-03 05:56:50,125 | INFO     | current chi2=1.4420054361720172 (change=53.58173788960221 %)
[2025-12-03 06:57:49] 2025-12-03 05:56:50,125 | INFO     | sum of square deviations: 2996454322.0
[2025-12-03 06:57:49] 2025-12-03 05:56:50,126 | INFO     | sum of deviations: 53347700975.000015
[2025-12-03 06:57:49] 2025-12-03 05:56:50,126 | INFO     | mean x: 1764734915.0
[2025-12-03 06:57:49] 2025-12-03 05:56:50,126 | INFO     | mean y: 3466634.0046948357
[2025-12-03 06:57:49] 2025-12-03 05:56:50,126 | INFO     | intersect: -31415183686.926865
[2025-12-03 06:57:49] 2025-12-03 05:56:50,126 | INFO     | chi2: 1.425541525014532
[2025-12-03 06:57:49] 2025-12-03 05:56:50,126 | INFO     | current chi2=1.425541525014532 (change=1.1417371075375855 %)
[2025-12-03 06:57:49] 2025-12-03 05:56:50,126 | INFO     | left removable region: 20
[2025-12-03 06:57:49] 2025-12-03 05:56:50,126 | INFO     | sum of square deviations: 2194675568.0
[2025-12-03 06:57:49] 2025-12-03 05:56:50,127 | INFO     | sum of deviations: 62377195963.00002
[2025-12-03 06:57:49] 2025-12-03 05:56:50,127 | INFO     | mean x: 1764734884.5
[2025-12-03 06:57:49] 2025-12-03 05:56:50,127 | INFO     | mean y: 3501015.7708333335
[2025-12-03 06:57:49] 2025-12-03 05:56:50,127 | INFO     | intersect: -50153895967.28917
[2025-12-03 06:57:49] 2025-12-03 05:56:50,127 | INFO     | chi2: 0.011222570345474737
[2025-12-03 06:57:49] 2025-12-03 05:56:50,127 | INFO     | current memory leak: 28.42 B/s (using 192 data points, chi2=0.01)
[2025-12-03 06:57:49] 2025-12-03 05:56:50,127 | INFO     | could have reported an average CPU frequency of 2875 MHz (11 samples)
[2025-12-03 06:57:49] 2025-12-03 05:56:50,127 | INFO     | ..............................
[2025-12-03 06:57:49] 2025-12-03 05:56:50,127 | INFO     | . Timing measurements:
[2025-12-03 06:57:49] 2025-12-03 05:56:50,127 | INFO     | . get job = 0 s
[2025-12-03 06:57:49] 2025-12-03 05:56:50,127 | INFO     | . initial setup = 1 s
[2025-12-03 06:57:49] 2025-12-03 05:56:50,127 | INFO     | . payload setup = 4 s
[2025-12-03 06:57:49] 2025-12-03 05:56:50,127 | INFO     | . stage-in = 0 s
[2025-12-03 06:57:49] 2025-12-03 05:56:50,128 | INFO     | . payload execution = 13563 s
[2025-12-03 06:57:49] 2025-12-03 05:56:50,128 | INFO     | . stage-out = 1 s
[2025-12-03 06:57:49] 2025-12-03 05:56:50,128 | INFO     | . log creation = 0 s
[2025-12-03 06:57:49] 2025-12-03 05:56:50,128 | INFO     | ..............................
[2025-12-03 06:57:49] 2025-12-03 05:56:50,178 | INFO     | 
[2025-12-03 06:57:49] 2025-12-03 05:56:50,178 | INFO     | job summary report
[2025-12-03 06:57:49] 2025-12-03 05:56:50,179 | INFO     | --------------------------------------------------
[2025-12-03 06:57:49] 2025-12-03 05:56:50,179 | INFO     | PanDA job id: 6897834923
[2025-12-03 06:57:49] 2025-12-03 05:56:50,179 | INFO     | task id: 47530783
[2025-12-03 06:57:49] 2025-12-03 05:56:50,179 | INFO     | errors: (none)
[2025-12-03 06:57:49] 2025-12-03 05:56:50,179 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 06:57:49] 2025-12-03 05:56:50,179 | INFO     | pilot state: finished 
[2025-12-03 06:57:49] 2025-12-03 05:56:50,179 | INFO     | transexitcode: 0
[2025-12-03 06:57:49] 2025-12-03 05:56:50,179 | INFO     | exeerrorcode: 0
[2025-12-03 06:57:49] 2025-12-03 05:56:50,179 | INFO     | exeerrordiag: 
[2025-12-03 06:57:49] 2025-12-03 05:56:50,179 | INFO     | exitcode: 0
[2025-12-03 06:57:49] 2025-12-03 05:56:50,179 | INFO     | exitmsg: OK
[2025-12-03 06:57:49] 2025-12-03 05:56:50,179 | INFO     | cpuconsumptiontime: 103788 s
[2025-12-03 06:57:49] 2025-12-03 05:56:50,179 | INFO     | nevents: 1000
[2025-12-03 06:57:49] 2025-12-03 05:56:50,179 | INFO     | neventsw: 0
[2025-12-03 06:57:49] 2025-12-03 05:56:50,179 | INFO     | pid: 26754
[2025-12-03 06:57:49] 2025-12-03 05:56:50,180 | INFO     | pgrp: 26754
[2025-12-03 06:57:49] 2025-12-03 05:56:50,180 | INFO     | corecount: 8
[2025-12-03 06:57:49] 2025-12-03 05:56:50,180 | INFO     | event service: False
[2025-12-03 06:57:49] 2025-12-03 05:56:50,180 | INFO     | sizes: {0: 2284294, 1: 2284604, 2: 2284866, 11: 2284894, 13571: 2335355, 13572: 2344379, 13573: 2344563, 13577: 2344809}
[2025-12-03 06:57:49] 2025-12-03 05:56:50,180 | INFO     | --------------------------------------------------
[2025-12-03 06:57:49] 2025-12-03 05:56:50,180 | INFO     | 
[2025-12-03 06:57:49] 2025-12-03 05:56:50,180 | INFO     | executing command: ls -lF /tmp/job_10946643/atlas/pilot/slots/0
[2025-12-03 06:57:49] 2025-12-03 05:56:50,188 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 06:57:49] 2025-12-03 05:56:50,188 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 06:57:49] 2025-12-03 05:56:50,188 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 06:57:49] 2025-12-03 05:56:50,188 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 06:57:49] 2025-12-03 05:56:50,188 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 06:57:49] 2025-12-03 05:56:50,189 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 06:57:49] 2025-12-03 05:56:50,189 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 06:57:49] 2025-12-03 05:56:50,189 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 06:57:49] 2025-12-03 05:56:50,189 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 06:57:49] 2025-12-03 05:56:50,189 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 06:57:49] 2025-12-03 05:56:50,189 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 06:57:49] 2025-12-03 05:56:50,189 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 06:57:49] 2025-12-03 05:56:50,189 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 06:57:49] 2025-12-03 05:56:50,189 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 06:57:49] 2025-12-03 05:56:50,189 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 06:57:49] 2025-12-03 05:56:50,189 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 06:57:49] 2025-12-03 05:56:50,189 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 06:57:49] 2025-12-03 05:56:50,189 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 06:57:49] 2025-12-03 05:56:50,189 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 06:57:49] 2025-12-03 05:56:50,189 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 06:57:49] 2025-12-03 05:56:50,189 | INFO     | job 6897834923 has completed (purged errors)
[2025-12-03 06:57:49] 2025-12-03 05:56:50,189 | INFO     | overall cleanup function is called
[2025-12-03 06:57:49] 2025-12-03 05:56:51,195 | INFO     | --- collectZombieJob: --- 10, [26754]
[2025-12-03 06:57:49] 2025-12-03 05:56:51,195 | INFO     | zombie collector waiting for pid 26754
[2025-12-03 06:57:49] 2025-12-03 05:56:51,195 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 06:57:49] 2025-12-03 05:56:51,195 | INFO     | collected zombie processes
[2025-12-03 06:57:49] 2025-12-03 05:56:51,195 | INFO     | will attempt to kill all subprocesses of pid=26754
[2025-12-03 06:57:49] 2025-12-03 05:56:51,310 | INFO     | process IDs to be killed: [26754] (in reverse order)
[2025-12-03 06:57:49] 2025-12-03 05:56:51,351 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 06:57:49] 2025-12-03 05:56:51,352 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 06:57:49] 2025-12-03 05:56:51,357 | INFO     | did not find any defunct processes belonging to 26754
[2025-12-03 06:57:49] 2025-12-03 05:56:51,360 | INFO     | did not find any defunct processes belonging to 26754
[2025-12-03 06:57:49] 2025-12-03 05:56:51,361 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 06:57:49] 2025-12-03 05:56:51,361 | INFO     | ready for new job
[2025-12-03 06:57:49] 2025-12-03 05:56:51,361 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 06:57:49] 2025-12-03 05:56:51,362 | INFO     | ***************************************
[2025-12-03 06:57:49] 2025-12-03 05:56:51,362 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 06:57:49] 2025-12-03 05:56:51,362 | INFO     | ***************************************
[2025-12-03 06:57:49] 2025-12-03 05:56:51,362 | INFO     | 
[2025-12-03 06:57:49] 2025-12-03 05:56:51,376 | INFO     | architecture information:
[2025-12-03 06:57:49] 2025-12-03 05:56:51,376 | INFO     | executing command: cat /etc/os-release
[2025-12-03 06:57:49] 2025-12-03 05:56:51,383 | INFO     | cat /etc/os-release:
[2025-12-03 06:57:49] NAME="CentOS Linux"
[2025-12-03 06:57:49] VERSION="7 (Core)"
[2025-12-03 06:57:49] ID="centos"
[2025-12-03 06:57:49] ID_LIKE="rhel fedora"
[2025-12-03 06:57:49] VERSION_ID="7"
[2025-12-03 06:57:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 06:57:49] ANSI_COLOR="0;31"
[2025-12-03 06:57:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 06:57:49] HOME_URL="https://www.centos.org/"
[2025-12-03 06:57:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 06:57:49] 
[2025-12-03 06:57:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 06:57:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 06:57:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 06:57:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 06:57:49] 
[2025-12-03 06:57:49] 2025-12-03 05:56:51,383 | INFO     | ***************************************
[2025-12-03 06:57:49] 2025-12-03 05:56:51,886 | INFO     | executing command: df -mP /tmp/job_10946643/atlas/pilot/slots/0
[2025-12-03 06:57:49] 2025-12-03 05:56:51,893 | INFO     | sufficient remaining disk space (219701837824 B)
[2025-12-03 06:57:49] 2025-12-03 05:56:51,893 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 06:57:49] 2025-12-03 05:56:51,893 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 06:57:49] 2025-12-03 05:56:51,893 | INFO     | update_server=False
[2025-12-03 06:57:49] 2025-12-03 05:56:51,893 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 06:57:49] 2025-12-03 05:56:51,893 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 06:57:49] 2025-12-03 05:56:51,991 | INFO     | all job control threads have been joined
[2025-12-03 06:57:49] 2025-12-03 05:56:52,191 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 06:57:49] 2025-12-03 05:56:52,191 | INFO     | aborting loop
[2025-12-03 06:57:49] 2025-12-03 05:56:52,207 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 06:57:49] 2025-12-03 05:56:52,216 | INFO     | all data control threads have been joined
[2025-12-03 06:57:49] 2025-12-03 05:56:52,581 | INFO     | all payload control threads have been joined
[2025-12-03 06:57:49] 2025-12-03 05:56:52,898 | INFO     | [job] queue monitor thread has finished
[2025-12-03 06:57:49] 2025-12-03 05:56:52,898 | INFO     | [job] retrieve thread has finished
[2025-12-03 06:57:49] 2025-12-03 05:56:52,927 | INFO     | [payload] validate_post thread has finished
[2025-12-03 06:57:49] 2025-12-03 05:56:52,943 | INFO     | [data] copytool_in thread has finished
[2025-12-03 06:57:49] 2025-12-03 05:56:52,968 | INFO     | [payload] failed_post thread has finished
[2025-12-03 06:57:49] 2025-12-03 05:56:52,996 | INFO     | [job] control thread has finished
[2025-12-03 06:57:49] 2025-12-03 05:56:53,007 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 06:57:49] 2025-12-03 05:56:53,196 | INFO     | [job] job monitor thread has finished
[2025-12-03 06:57:49] 2025-12-03 05:56:53,221 | INFO     | [data] control thread has finished
[2025-12-03 06:57:49] 2025-12-03 05:56:53,542 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 06:57:49] 2025-12-03 05:56:53,583 | INFO     | [payload] control thread has finished
[2025-12-03 06:57:49] 2025-12-03 05:56:53,820 | INFO     | [job] validate thread has finished
[2025-12-03 06:57:49] 2025-12-03 05:56:53,877 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 06:57:49] 2025-12-03 05:56:54,311 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 06:57:49] 2025-12-03 05:56:55,012 | INFO     | [data] copytool_out thread has finished
[2025-12-03 06:57:49] 2025-12-03 05:56:56,212 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 06:57:49] 2025-12-03 05:57:02,176 | INFO     | job.realtimelogging is not enabled
[2025-12-03 06:57:49] 2025-12-03 05:57:03,182 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 06:57:49] 2025-12-03 05:57:21,461 | INFO     | PID=19309 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-03 06:57:49] 2025-12-03 05:57:21,461 | INFO     | .. there are 6 such processes running
[2025-12-03 06:57:49] 2025-12-03 05:57:21,462 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 06:57:49] 2025-12-03 05:57:21,462 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 06:57:49] 2025-12-03 05:57:21,462 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 06:57:49] 2025-12-03 05:57:42,111 | INFO     | [monitor] cgroup control has ended
[2025-12-03 06:57:49] 2025-12-03 05:57:43,799 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456065021696)>']
[2025-12-03 06:57:49] 2025-12-03 05:57:44,577 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 06:57:49] 2025-12-03 05:57:44,578 | INFO     | [monitor] control thread has ended
[2025-12-03 06:57:49] 2025-12-03 05:57:48,825 | INFO     | all workflow threads have been joined
[2025-12-03 06:57:49] 2025-12-03 05:57:48,825 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 06:57:49] 2025-12-03 05:57:48,825 | INFO     | traces error code: 0
[2025-12-03 06:57:49] 2025-12-03 05:57:48,825 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 06:57:49] 2025-12-03 05:57:48,886 [wrapper] ==== pilot stdout END ====
[2025-12-03 06:57:49] 2025-12-03 05:57:48,887 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 06:57:49] 2025-12-03 05:57:48,888 [wrapper] pilotpid: 19309
[2025-12-03 06:57:49] 2025-12-03 05:57:48,889 [wrapper] Pilot exit status: 0
[2025-12-03 06:57:49] 2025-12-03 05:57:48,893 [wrapper] pandaids: 6897834923
[2025-12-03 06:57:49] 2025-12-03 05:57:48,918 [wrapper] cleanup supervisor_pilot 13923 19310
[2025-12-03 06:57:49] 2025-12-03 05:57:48,919 [wrapper] Test setup, not cleaning
[2025-12-03 06:57:49] 2025-12-03 05:57:48,920 [wrapper] apfmon messages muted
[2025-12-03 06:57:49] 2025-12-03 05:57:48,921 [wrapper] ==== wrapper stdout END ====
[2025-12-03 06:57:49] 2025-12-03 05:57:48,922 [wrapper] ==== wrapper stderr END ====
[2025-12-03 06:57:49]  *** Error codes and diagnostics ***
[2025-12-03 06:57:49]     "exeErrorCode": 0,
[2025-12-03 06:57:49]     "exeErrorDiag": "",
[2025-12-03 06:57:49]     "pilotErrorCode": 0,
[2025-12-03 06:57:49]     "pilotErrorDiag": "",
[2025-12-03 06:57:49]  *** Listing of results directory ***
[2025-12-03 06:57:49] total 1075460
[2025-12-03 06:57:49] -rw------- 1 mf493845 unix-user    576529 Nov 28 23:41 pilot3.tar.gz
[2025-12-03 06:57:49] -rwx------ 1 mf493845 unix-user     36292 Nov 28 23:46 runpilot2-wrapper.sh
[2025-12-03 06:57:49] -rw------- 1 mf493845 unix-user      5112 Nov 28 23:49 queuedata.json
[2025-12-03 06:57:49] -rw------- 1 mf493845 unix-user       100 Dec  3 01:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 06:57:49] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  3 01:33 run_atlas
[2025-12-03 06:57:49] -rw------- 1 mf493845 unix-user       105 Dec  3 01:33 job.xml
[2025-12-03 06:57:49] -rw-r--r-- 2 mf493845 unix-user 378433782 Dec  3 03:10 EVNT.47530775._000046.pool.root.1
[2025-12-03 06:57:49] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 03:10 start_atlas.sh
[2025-12-03 06:57:49] drwxrwx--x 2 mf493845 unix-user       100 Dec  3 03:10 shared
[2025-12-03 06:57:49] -rw-r--r-- 2 mf493845 unix-user    590122 Dec  3 03:10 input.tar.gz
[2025-12-03 06:57:49] -rw------- 1 mf493845 unix-user      6391 Dec  3 03:10 init_data.xml
[2025-12-03 06:57:49] -rw------- 1 mf493845 unix-user         0 Dec  3 03:10 boinc_setup_complete
[2025-12-03 06:57:49] -rw------- 1 mf493845 unix-user      8192 Dec  3 03:10 boinc_mmap_file
[2025-12-03 06:57:49] -rw------- 1 mf493845 unix-user         0 Dec  3 03:10 boinc_lockfile
[2025-12-03 06:57:49] -rw------- 1 mf493845 unix-user      2879 Dec  3 03:10 pandaJob.out
[2025-12-03 06:57:49] -rw------- 1 mf493845 unix-user    989300 Dec  3 03:10 agis_schedconf.cvmfs.json
[2025-12-03 06:57:49] drwx------ 5 mf493845 unix-user       440 Dec  3 03:10 pilot3
[2025-12-03 06:57:49] -rw------- 1 mf493845 unix-user 711698082 Dec  3 06:56 HITS.47530783._000456.pool.root.1
[2025-12-03 06:57:49] -rw------- 1 mf493845 unix-user      1024 Dec  3 06:56 memory_monitor_summary.json
[2025-12-03 06:57:49] -rw------- 1 mf493845 unix-user   1516240 Dec  3 06:56 agis_ddmendpoints.agis.ALL.json
[2025-12-03 06:57:49] -rw------- 1 mf493845 unix-user   1639886 Dec  3 06:56 log.47530783._000456.job.log.tgz.1
[2025-12-03 06:57:49] -rw------- 1 mf493845 unix-user     27986 Dec  3 06:56 heartbeat.json
[2025-12-03 06:57:49] -rw------- 1 mf493845 unix-user        95 Dec  3 06:57 pilot_heartbeat.json
[2025-12-03 06:57:49] -rw------- 1 mf493845 unix-user      4907 Dec  3 06:57 pilotlog.txt
[2025-12-03 06:57:49] -rw------- 1 mf493845 unix-user   1967989 Dec  3 06:57 log.47530783._000456.job.log.1
[2025-12-03 06:57:49] -rw------- 1 mf493845 unix-user       353 Dec  3 06:57 output.list
[2025-12-03 06:57:49] -rw------- 1 mf493845 unix-user       620 Dec  3 06:57 runtime_log
[2025-12-03 06:57:49] -rw------- 1 mf493845 unix-user   3645440 Dec  3 06:57 result.tar.gz
[2025-12-03 06:57:49] -rw------- 1 mf493845 unix-user      9221 Dec  3 06:57 runtime_log.err
[2025-12-03 06:57:49] -rw------- 1 mf493845 unix-user       651 Dec  3 06:57 G1eKDmPPMj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmWaLKDmoQL6Gm.diag
[2025-12-03 06:57:49] -rw------- 1 mf493845 unix-user     21767 Dec  3 06:57 stderr.txt
[2025-12-03 06:57:49] HITS file was successfully produced:
[2025-12-03 06:57:49] -rw------- 1 mf493845 unix-user 711698082 Dec  3 06:56 shared/HITS.pool.root.1
[2025-12-03 06:57:49]  *** Contents of shared directory: ***
[2025-12-03 06:57:49] total 1068744
[2025-12-03 06:57:49] -rw-r--r-- 2 mf493845 unix-user 378433782 Dec  3 03:10 ATLAS.root_0
[2025-12-03 06:57:49] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 03:10 start_atlas.sh
[2025-12-03 06:57:49] -rw-r--r-- 2 mf493845 unix-user    590122 Dec  3 03:10 input.tar.gz
[2025-12-03 06:57:49] -rw------- 1 mf493845 unix-user 711698082 Dec  3 06:56 HITS.pool.root.1
[2025-12-03 06:57:49] -rw------- 1 mf493845 unix-user   3645440 Dec  3 06:57 result.tar.gz
06:57:51 (15544): run_atlas exited; CPU time 103935.321935
06:57:51 (15544): called boinc_finish(0)

</stderr_txt>
]]>

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