Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
03:14:07 (29926): wrapper (7.7.26015): starting
03:14:07 (29926): wrapper: running run_atlas (--nthreads 8)
[2025-12-03 03:14:07] Arguments: --nthreads 8
[2025-12-03 03:14:07] Threads: 8
[2025-12-03 03:14:07] Checking for CVMFS
[2025-12-03 03:14:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 03:14:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 03:14:07] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 03:14:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 03:14:08] 2.11.0.0 4400 74996 86060 153576 1 1 3933592 4096001 0 130560 1 11641086 99.624 9603755 817 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-03 03:14:08] CVMFS is ok
[2025-12-03 03:14:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-03 03:14:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-03 03:14:08] Further information can be found at the LHC@home message board.
[2025-12-03 03:14:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 03:14:08] Checking for apptainer binary...
[2025-12-03 03:14:08] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-03 03:14:08] apptainer is not installed, using version from CVMFS
[2025-12-03 03:14:08] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 03:14:08] WARNING: Environment variable TMPDIR already has value [/tmp/job_10946744/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node344
[2025-12-03 03:14:08] apptainer works
[2025-12-03 03:14:08] Set ATHENA_PROC_NUMBER=8
[2025-12-03 03:14:08] Set ATHENA_CORE_NUMBER=8
[2025-12-03 03:14:08] Starting ATLAS job with PandaID=6901270857
[2025-12-03 03:14:08] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10946744/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 07:03:43]  *** The last 200 lines of the pilot log: ***
[2025-12-03 07:03:43] 2025-12-03 06:03:10,191 | INFO     | time since job start (13737s) is within the limit (172800.0s)
[2025-12-03 07:03:43] 2025-12-03 06:03:10,935 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 07:03:43] 2025-12-03 06:03:10,955 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2988.19925
[2025-12-03 07:03:43] 2025-12-03 06:03:10,961 | INFO     | using path: /tmp/job_10946744/atlas/pilot/slots/0/PanDA_Pilot-6901270857/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 07:03:43] 2025-12-03 06:03:10,961 | INFO     | extracted standard info from prmon json
[2025-12-03 07:03:43] 2025-12-03 06:03:10,961 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 07:03:43] 2025-12-03 06:03:10,961 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 07:03:43] 2025-12-03 06:03:10,963 | INFO     | fitting pss+swap vs Time
[2025-12-03 07:03:43] 2025-12-03 06:03:10,963 | INFO     | sum of square deviations: 3531973200.0
[2025-12-03 07:03:43] 2025-12-03 06:03:10,964 | INFO     | sum of deviations: 1528524455743.0
[2025-12-03 07:03:43] 2025-12-03 06:03:10,964 | INFO     | mean x: 1764734906.0
[2025-12-03 07:03:43] 2025-12-03 06:03:10,964 | INFO     | mean y: 5584089.8133333335
[2025-12-03 07:03:43] 2025-12-03 06:03:10,964 | INFO     | intersect: -763714950857.7124
[2025-12-03 07:03:43] 2025-12-03 06:03:10,964 | INFO     | chi2: 3.80538841408697
[2025-12-03 07:03:43] 2025-12-03 06:03:10,965 | INFO     | sum of square deviations: 3301699115.0
[2025-12-03 07:03:43] 2025-12-03 06:03:10,965 | INFO     | sum of deviations: 1563187904084.5
[2025-12-03 07:03:43] 2025-12-03 06:03:10,965 | INFO     | mean x: 1764734753.5
[2025-12-03 07:03:43] 2025-12-03 06:03:10,965 | INFO     | mean y: 5606128.15
[2025-12-03 07:03:43] 2025-12-03 06:03:10,965 | INFO     | intersect: -835507238775.2662
[2025-12-03 07:03:43] 2025-12-03 06:03:10,966 | INFO     | chi2: 2.0583506673358083
[2025-12-03 07:03:43] 2025-12-03 06:03:10,966 | INFO     | current chi2=2.0583506673358083 (change=45.90957759486241 %)
[2025-12-03 07:03:43] 2025-12-03 06:03:10,966 | INFO     | sum of square deviations: 3081657780.0
[2025-12-03 07:03:43] 2025-12-03 06:03:10,966 | INFO     | sum of deviations: 1471867284131.0
[2025-12-03 07:03:43] 2025-12-03 06:03:10,966 | INFO     | mean x: 1764734601.0
[2025-12-03 07:03:43] 2025-12-03 06:03:10,966 | INFO     | mean y: 5542827.130232559
[2025-12-03 07:03:43] 2025-12-03 06:03:10,967 | INFO     | intersect: -842870373260.4354
[2025-12-03 07:03:43] 2025-12-03 06:03:10,967 | INFO     | chi2: 2.0864341839012397
[2025-12-03 07:03:43] 2025-12-03 06:03:10,967 | INFO     | current chi2=2.0864341839012397 (change=-1.3643698817257812 %)
[2025-12-03 07:03:43] 2025-12-03 06:03:10,967 | INFO     | right removable region: 214
[2025-12-03 07:03:43] 2025-12-03 06:03:10,967 | INFO     | sum of square deviations: 3301699115.0
[2025-12-03 07:03:43] 2025-12-03 06:03:10,968 | INFO     | sum of deviations: 1403705480890.4995
[2025-12-03 07:03:43] 2025-12-03 06:03:10,968 | INFO     | mean x: 1764735058.5
[2025-12-03 07:03:43] 2025-12-03 06:03:10,968 | INFO     | mean y: 5666441.831818182
[2025-12-03 07:03:43] 2025-12-03 06:03:10,968 | INFO     | intersect: -750265084360.9912
[2025-12-03 07:03:43] 2025-12-03 06:03:10,968 | INFO     | chi2: 2.4291528047955264
[2025-12-03 07:03:43] 2025-12-03 06:03:10,968 | INFO     | current chi2=2.4291528047955264 (change=36.1654438268858 %)
[2025-12-03 07:03:43] 2025-12-03 06:03:10,968 | INFO     | sum of square deviations: 3081657780.0
[2025-12-03 07:03:43] 2025-12-03 06:03:10,969 | INFO     | sum of deviations: 1320787006793.0002
[2025-12-03 07:03:43] 2025-12-03 06:03:10,969 | INFO     | mean x: 1764735211.0
[2025-12-03 07:03:43] 2025-12-03 06:03:10,969 | INFO     | mean y: 5723908.427906977
[2025-12-03 07:03:43] 2025-12-03 06:03:10,969 | INFO     | intersect: -756353191817.4136
[2025-12-03 07:03:43] 2025-12-03 06:03:10,969 | INFO     | chi2: 2.354412536465825
[2025-12-03 07:03:43] 2025-12-03 06:03:10,969 | INFO     | current chi2=2.354412536465825 (change=3.0768039039023165 %)
[2025-12-03 07:03:43] 2025-12-03 06:03:10,969 | INFO     | left removable region: 20
[2025-12-03 07:03:43] 2025-12-03 06:03:10,969 | INFO     | sum of square deviations: 2263977332.5
[2025-12-03 07:03:43] 2025-12-03 06:03:10,970 | INFO     | sum of deviations: 1111605821463.4998
[2025-12-03 07:03:43] 2025-12-03 06:03:10,970 | INFO     | mean x: 1764735180.5
[2025-12-03 07:03:43] 2025-12-03 06:03:10,970 | INFO     | mean y: 5796991.829896907
[2025-12-03 07:03:43] 2025-12-03 06:03:10,970 | INFO     | intersect: -866473682208.1854
[2025-12-03 07:03:43] 2025-12-03 06:03:10,970 | INFO     | chi2: 0.2189021429954845
[2025-12-03 07:03:43] 2025-12-03 06:03:10,970 | INFO     | current memory leak: 491.00 B/s (using 194 data points, chi2=0.22)
[2025-12-03 07:03:43] 2025-12-03 06:03:10,970 | INFO     | could have reported an average CPU frequency of 2847 MHz (11 samples)
[2025-12-03 07:03:43] 2025-12-03 06:03:10,971 | INFO     | ..............................
[2025-12-03 07:03:43] 2025-12-03 06:03:10,971 | INFO     | . Timing measurements:
[2025-12-03 07:03:43] 2025-12-03 06:03:10,971 | INFO     | . get job = 0 s
[2025-12-03 07:03:43] 2025-12-03 06:03:10,971 | INFO     | . initial setup = 1 s
[2025-12-03 07:03:43] 2025-12-03 06:03:10,971 | INFO     | . payload setup = 4 s
[2025-12-03 07:03:43] 2025-12-03 06:03:10,971 | INFO     | . stage-in = 0 s
[2025-12-03 07:03:43] 2025-12-03 06:03:10,971 | INFO     | . payload execution = 13710 s
[2025-12-03 07:03:43] 2025-12-03 06:03:10,971 | INFO     | . stage-out = 1 s
[2025-12-03 07:03:43] 2025-12-03 06:03:10,971 | INFO     | . log creation = 0 s
[2025-12-03 07:03:43] 2025-12-03 06:03:10,971 | INFO     | ..............................
[2025-12-03 07:03:43] 2025-12-03 06:03:11,019 | INFO     | 
[2025-12-03 07:03:43] 2025-12-03 06:03:11,019 | INFO     | job summary report
[2025-12-03 07:03:43] 2025-12-03 06:03:11,019 | INFO     | --------------------------------------------------
[2025-12-03 07:03:43] 2025-12-03 06:03:11,019 | INFO     | PanDA job id: 6901270857
[2025-12-03 07:03:43] 2025-12-03 06:03:11,019 | INFO     | task id: 47531111
[2025-12-03 07:03:43] 2025-12-03 06:03:11,019 | INFO     | errors: (none)
[2025-12-03 07:03:43] 2025-12-03 06:03:11,019 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 07:03:43] 2025-12-03 06:03:11,019 | INFO     | pilot state: finished 
[2025-12-03 07:03:43] 2025-12-03 06:03:11,019 | INFO     | transexitcode: 0
[2025-12-03 07:03:43] 2025-12-03 06:03:11,019 | INFO     | exeerrorcode: 0
[2025-12-03 07:03:43] 2025-12-03 06:03:11,019 | INFO     | exeerrordiag: 
[2025-12-03 07:03:43] 2025-12-03 06:03:11,019 | INFO     | exitcode: 0
[2025-12-03 07:03:43] 2025-12-03 06:03:11,019 | INFO     | exitmsg: OK
[2025-12-03 07:03:43] 2025-12-03 06:03:11,019 | INFO     | cpuconsumptiontime: 103546 s
[2025-12-03 07:03:43] 2025-12-03 06:03:11,019 | INFO     | nevents: 1000
[2025-12-03 07:03:43] 2025-12-03 06:03:11,019 | INFO     | neventsw: 0
[2025-12-03 07:03:43] 2025-12-03 06:03:11,019 | INFO     | pid: 12139
[2025-12-03 07:03:43] 2025-12-03 06:03:11,019 | INFO     | pgrp: 12139
[2025-12-03 07:03:43] 2025-12-03 06:03:11,019 | INFO     | corecount: 8
[2025-12-03 07:03:43] 2025-12-03 06:03:11,019 | INFO     | event service: False
[2025-12-03 07:03:43] 2025-12-03 06:03:11,019 | INFO     | sizes: {0: 2284569, 2: 2284831, 11: 2284859, 13718: 2335397, 13719: 2344421, 13721: 2344477, 13724: 2344851}
[2025-12-03 07:03:43] 2025-12-03 06:03:11,019 | INFO     | --------------------------------------------------
[2025-12-03 07:03:43] 2025-12-03 06:03:11,019 | INFO     | 
[2025-12-03 07:03:43] 2025-12-03 06:03:11,020 | INFO     | executing command: ls -lF /tmp/job_10946744/atlas/pilot/slots/0
[2025-12-03 07:03:43] 2025-12-03 06:03:11,029 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 07:03:43] 2025-12-03 06:03:11,029 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 07:03:43] 2025-12-03 06:03:11,029 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 07:03:43] 2025-12-03 06:03:11,029 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 07:03:43] 2025-12-03 06:03:11,029 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 07:03:43] 2025-12-03 06:03:11,029 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 07:03:43] 2025-12-03 06:03:11,030 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 07:03:43] 2025-12-03 06:03:11,030 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 07:03:43] 2025-12-03 06:03:11,030 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 07:03:43] 2025-12-03 06:03:11,030 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 07:03:43] 2025-12-03 06:03:11,030 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 07:03:43] 2025-12-03 06:03:11,030 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 07:03:43] 2025-12-03 06:03:11,030 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 07:03:43] 2025-12-03 06:03:11,030 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 07:03:43] 2025-12-03 06:03:11,030 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 07:03:43] 2025-12-03 06:03:11,030 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 07:03:43] 2025-12-03 06:03:11,030 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 07:03:43] 2025-12-03 06:03:11,030 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 07:03:43] 2025-12-03 06:03:11,030 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 07:03:43] 2025-12-03 06:03:11,030 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 07:03:43] 2025-12-03 06:03:11,030 | INFO     | job 6901270857 has completed (purged errors)
[2025-12-03 07:03:43] 2025-12-03 06:03:11,030 | INFO     | overall cleanup function is called
[2025-12-03 07:03:43] 2025-12-03 06:03:12,038 | INFO     | --- collectZombieJob: --- 10, [12139]
[2025-12-03 07:03:43] 2025-12-03 06:03:12,038 | INFO     | zombie collector waiting for pid 12139
[2025-12-03 07:03:43] 2025-12-03 06:03:12,038 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 07:03:43] 2025-12-03 06:03:12,038 | INFO     | collected zombie processes
[2025-12-03 07:03:43] 2025-12-03 06:03:12,038 | INFO     | will attempt to kill all subprocesses of pid=12139
[2025-12-03 07:03:43] 2025-12-03 06:03:12,149 | INFO     | process IDs to be killed: [12139] (in reverse order)
[2025-12-03 07:03:43] 2025-12-03 06:03:12,192 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 07:03:43] 2025-12-03 06:03:12,192 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 07:03:43] 2025-12-03 06:03:12,198 | INFO     | did not find any defunct processes belonging to 12139
[2025-12-03 07:03:43] 2025-12-03 06:03:12,201 | INFO     | did not find any defunct processes belonging to 12139
[2025-12-03 07:03:43] 2025-12-03 06:03:12,202 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 07:03:43] 2025-12-03 06:03:12,202 | INFO     | ready for new job
[2025-12-03 07:03:43] 2025-12-03 06:03:12,202 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 07:03:43] 2025-12-03 06:03:12,202 | INFO     | ***************************************
[2025-12-03 07:03:43] 2025-12-03 06:03:12,203 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 07:03:43] 2025-12-03 06:03:12,203 | INFO     | ***************************************
[2025-12-03 07:03:43] 2025-12-03 06:03:12,203 | INFO     | 
[2025-12-03 07:03:43] 2025-12-03 06:03:12,216 | INFO     | architecture information:
[2025-12-03 07:03:43] 2025-12-03 06:03:12,216 | INFO     | executing command: cat /etc/os-release
[2025-12-03 07:03:43] 2025-12-03 06:03:12,223 | INFO     | cat /etc/os-release:
[2025-12-03 07:03:43] NAME="CentOS Linux"
[2025-12-03 07:03:43] VERSION="7 (Core)"
[2025-12-03 07:03:43] ID="centos"
[2025-12-03 07:03:43] ID_LIKE="rhel fedora"
[2025-12-03 07:03:43] VERSION_ID="7"
[2025-12-03 07:03:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 07:03:43] ANSI_COLOR="0;31"
[2025-12-03 07:03:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 07:03:43] HOME_URL="https://www.centos.org/"
[2025-12-03 07:03:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 07:03:43] 
[2025-12-03 07:03:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 07:03:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 07:03:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 07:03:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 07:03:43] 
[2025-12-03 07:03:43] 2025-12-03 06:03:12,223 | INFO     | ***************************************
[2025-12-03 07:03:43] 2025-12-03 06:03:12,726 | INFO     | executing command: df -mP /tmp/job_10946744/atlas/pilot/slots/0
[2025-12-03 07:03:43] 2025-12-03 06:03:12,734 | INFO     | sufficient remaining disk space (218423623680 B)
[2025-12-03 07:03:43] 2025-12-03 06:03:12,734 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 07:03:43] 2025-12-03 06:03:12,734 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 07:03:43] 2025-12-03 06:03:12,734 | INFO     | update_server=False
[2025-12-03 07:03:43] 2025-12-03 06:03:12,734 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 07:03:43] 2025-12-03 06:03:12,734 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 07:03:43] 2025-12-03 06:03:12,735 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 07:03:43] 2025-12-03 06:03:12,735 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 07:03:43] 2025-12-03 06:03:12,735 | INFO     | aborting loop
[2025-12-03 07:03:43] 2025-12-03 06:03:13,262 | INFO     | all job control threads have been joined
[2025-12-03 07:03:43] 2025-12-03 06:03:13,545 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 07:03:43] 2025-12-03 06:03:13,700 | INFO     | all data control threads have been joined
[2025-12-03 07:03:43] 2025-12-03 06:03:13,735 | INFO     | [job] retrieve thread has finished
[2025-12-03 07:03:43] 2025-12-03 06:03:13,740 | INFO     | [job] queue monitor thread has finished
[2025-12-03 07:03:43] 2025-12-03 06:03:13,740 | INFO     | [job] job monitor thread has finished
[2025-12-03 07:03:43] 2025-12-03 06:03:13,881 | INFO     | [job] validate thread has finished
[2025-12-03 07:03:43] 2025-12-03 06:03:13,903 | INFO     | [payload] validate_post thread has finished
[2025-12-03 07:03:43] 2025-12-03 06:03:14,061 | INFO     | all payload control threads have been joined
[2025-12-03 07:03:43] 2025-12-03 06:03:14,267 | INFO     | [job] control thread has finished
[2025-12-03 07:03:43] 2025-12-03 06:03:14,398 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 07:03:43] 2025-12-03 06:03:14,462 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 07:03:43] 2025-12-03 06:03:14,706 | INFO     | [data] control thread has finished
[2025-12-03 07:03:43] 2025-12-03 06:03:14,740 | INFO     | [data] copytool_out thread has finished
[2025-12-03 07:03:43] 2025-12-03 06:03:14,750 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 07:03:43] 2025-12-03 06:03:14,881 | INFO     | [payload] failed_post thread has finished
[2025-12-03 07:03:43] 2025-12-03 06:03:14,943 | INFO     | [data] copytool_in thread has finished
[2025-12-03 07:03:43] 2025-12-03 06:03:15,066 | INFO     | [payload] control thread has finished
[2025-12-03 07:03:43] 2025-12-03 06:03:17,551 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 07:03:43] 2025-12-03 06:03:23,314 | INFO     | job.realtimelogging is not enabled
[2025-12-03 07:03:43] 2025-12-03 06:03:24,320 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 07:03:43] 2025-12-03 06:03:36,358 | INFO     | [monitor] cgroup control has ended
[2025-12-03 07:03:43] 2025-12-03 06:03:36,907 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456062920448)>']
[2025-12-03 07:03:43] 2025-12-03 06:03:41,921 | INFO     | all workflow threads have been joined
[2025-12-03 07:03:43] 2025-12-03 06:03:41,921 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 07:03:43] 2025-12-03 06:03:41,922 | INFO     | traces error code: 0
[2025-12-03 07:03:43] 2025-12-03 06:03:41,922 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 07:03:43] 2025-12-03 06:03:43,394 | INFO     | PID=2549 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-03 07:03:43] 2025-12-03 06:03:43,394 | INFO     | .. there are 6 such processes running
[2025-12-03 07:03:43] 2025-12-03 06:03:43,394 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 07:03:43] 2025-12-03 06:03:43,394 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 07:03:43] 2025-12-03 06:03:43,394 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 07:03:43] 2025-12-03 06:03:43,394 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 07:03:43] 2025-12-03 06:03:43,394 | CRITICAL | thread 'MainThread' is not alive
[2025-12-03 07:03:43] 2025-12-03 06:03:43,394 | INFO     | [monitor] control thread has ended
[2025-12-03 07:03:43] 2025-12-03 06:03:43,454 [wrapper] ==== pilot stdout END ====
[2025-12-03 07:03:43] 2025-12-03 06:03:43,455 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 07:03:43] 2025-12-03 06:03:43,456 [wrapper] pilotpid: 2549
[2025-12-03 07:03:43] 2025-12-03 06:03:43,457 [wrapper] Pilot exit status: 0
[2025-12-03 07:03:43] 2025-12-03 06:03:43,460 [wrapper] pandaids: 6901270857
[2025-12-03 07:03:43] 2025-12-03 06:03:43,485 [wrapper] cleanup supervisor_pilot  8929 2550
[2025-12-03 07:03:43] 2025-12-03 06:03:43,486 [wrapper] Test setup, not cleaning
[2025-12-03 07:03:43] 2025-12-03 06:03:43,487 [wrapper] apfmon messages muted
[2025-12-03 07:03:43] 2025-12-03 06:03:43,488 [wrapper] ==== wrapper stdout END ====
[2025-12-03 07:03:43] 2025-12-03 06:03:43,489 [wrapper] ==== wrapper stderr END ====
[2025-12-03 07:03:43]  *** Error codes and diagnostics ***
[2025-12-03 07:03:43]     "exeErrorCode": 0,
[2025-12-03 07:03:43]     "exeErrorDiag": "",
[2025-12-03 07:03:43]     "pilotErrorCode": 0,
[2025-12-03 07:03:43]     "pilotErrorDiag": "",
[2025-12-03 07:03:43]  *** Listing of results directory ***
[2025-12-03 07:03:43] total 1055252
[2025-12-03 07:03:43] -rw------- 1 mf493845 unix-user    576529 Nov 29 10:19 pilot3.tar.gz
[2025-12-03 07:03:43] -rwx------ 1 mf493845 unix-user     36292 Nov 29 10:19 runpilot2-wrapper.sh
[2025-12-03 07:03:43] -rw------- 1 mf493845 unix-user      5112 Nov 29 10:20 queuedata.json
[2025-12-03 07:03:43] -rw------- 1 mf493845 unix-user       100 Dec  3 01:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 07:03:43] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  3 01:38 run_atlas
[2025-12-03 07:03:43] -rw------- 1 mf493845 unix-user       105 Dec  3 01:38 job.xml
[2025-12-03 07:03:43] -rw-r--r-- 2 mf493845 unix-user 375805617 Dec  3 03:14 EVNT.47531104._000081.pool.root.1
[2025-12-03 07:03:43] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 03:14 start_atlas.sh
[2025-12-03 07:03:43] drwxrwx--x 2 mf493845 unix-user       100 Dec  3 03:14 shared
[2025-12-03 07:03:43] -rw-r--r-- 2 mf493845 unix-user    590120 Dec  3 03:14 input.tar.gz
[2025-12-03 07:03:43] -rw------- 1 mf493845 unix-user      6391 Dec  3 03:14 init_data.xml
[2025-12-03 07:03:43] -rw------- 1 mf493845 unix-user         0 Dec  3 03:14 boinc_setup_complete
[2025-12-03 07:03:43] -rw------- 1 mf493845 unix-user      8192 Dec  3 03:14 boinc_mmap_file
[2025-12-03 07:03:43] -rw------- 1 mf493845 unix-user         0 Dec  3 03:14 boinc_lockfile
[2025-12-03 07:03:43] -rw------- 1 mf493845 unix-user      2875 Dec  3 03:14 pandaJob.out
[2025-12-03 07:03:43] -rw------- 1 mf493845 unix-user    989300 Dec  3 03:14 agis_schedconf.cvmfs.json
[2025-12-03 07:03:43] drwx------ 5 mf493845 unix-user       440 Dec  3 03:14 pilot3
[2025-12-03 07:03:43] -rw------- 1 mf493845 unix-user 693647878 Dec  3 07:02 HITS.47531111._000791.pool.root.1
[2025-12-03 07:03:43] -rw------- 1 mf493845 unix-user      1024 Dec  3 07:03 memory_monitor_summary.json
[2025-12-03 07:03:43] -rw------- 1 mf493845 unix-user   1516240 Dec  3 07:03 agis_ddmendpoints.agis.ALL.json
[2025-12-03 07:03:43] -rw------- 1 mf493845 unix-user   1633281 Dec  3 07:03 log.47531111._000791.job.log.tgz.1
[2025-12-03 07:03:43] -rw------- 1 mf493845 unix-user     28061 Dec  3 07:03 heartbeat.json
[2025-12-03 07:03:43] -rw------- 1 mf493845 unix-user       889 Dec  3 07:03 pilotlog.txt
[2025-12-03 07:03:43] -rw------- 1 mf493845 unix-user        95 Dec  3 07:03 pilot_heartbeat.json
[2025-12-03 07:03:43] -rw------- 1 mf493845 unix-user   1969547 Dec  3 07:03 log.47531111._000791.job.log.1
[2025-12-03 07:03:43] -rw------- 1 mf493845 unix-user       353 Dec  3 07:03 output.list
[2025-12-03 07:03:43] -rw------- 1 mf493845 unix-user       620 Dec  3 07:03 runtime_log
[2025-12-03 07:03:43] -rw------- 1 mf493845 unix-user   3645440 Dec  3 07:03 result.tar.gz
[2025-12-03 07:03:43] -rw------- 1 mf493845 unix-user      9221 Dec  3 07:03 runtime_log.err
[2025-12-03 07:03:43] -rw------- 1 mf493845 unix-user       651 Dec  3 07:03 gh7NDmKIWj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmN2OKDmzjmHsn.diag
[2025-12-03 07:03:43] -rw------- 1 mf493845 unix-user     21617 Dec  3 07:03 stderr.txt
[2025-12-03 07:03:43] HITS file was successfully produced:
[2025-12-03 07:03:43] -rw------- 1 mf493845 unix-user 693647878 Dec  3 07:02 shared/HITS.pool.root.1
[2025-12-03 07:03:43]  *** Contents of shared directory: ***
[2025-12-03 07:03:43] total 1048548
[2025-12-03 07:03:43] -rw-r--r-- 2 mf493845 unix-user 375805617 Dec  3 03:14 ATLAS.root_0
[2025-12-03 07:03:43] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 03:14 start_atlas.sh
[2025-12-03 07:03:43] -rw-r--r-- 2 mf493845 unix-user    590120 Dec  3 03:14 input.tar.gz
[2025-12-03 07:03:43] -rw------- 1 mf493845 unix-user 693647878 Dec  3 07:02 HITS.pool.root.1
[2025-12-03 07:03:43] -rw------- 1 mf493845 unix-user   3645440 Dec  3 07:03 result.tar.gz
07:03:44 (29926): run_atlas exited; CPU time 103705.825195
07:03:44 (29926): called boinc_finish(0)

</stderr_txt>
]]>

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