Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
03:20:16 (15999): wrapper (7.7.26015): starting
03:20:16 (15999): wrapper: running run_atlas (--nthreads 8)
[2025-12-03 03:20:16] Arguments: --nthreads 8
[2025-12-03 03:20:16] Threads: 8
[2025-12-03 03:20:16] Checking for CVMFS
[2025-12-03 03:20:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 03:20:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 03:20:16] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 03:20:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 03:20:17] 2.11.0.0 4230 74805 88832 153577 2 76 3342139 4096000 5578 130560 1 7647099 99.553 5374918 506 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-03 03:20:17] CVMFS is ok
[2025-12-03 03:20:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-03 03:20:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-03 03:20:17] Further information can be found at the LHC@home message board.
[2025-12-03 03:20:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 03:20:17] Checking for apptainer binary...
[2025-12-03 03:20:17] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-03 03:20:17] apptainer is not installed, using version from CVMFS
[2025-12-03 03:20:17] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 03:20:17] WARNING: Environment variable TMPDIR already has value [/tmp/job_10946472/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node163
[2025-12-03 03:20:17] apptainer works
[2025-12-03 03:20:17] Set ATHENA_PROC_NUMBER=8
[2025-12-03 03:20:17] Set ATHENA_CORE_NUMBER=8
[2025-12-03 03:20:17] Starting ATLAS job with PandaID=6899449064
[2025-12-03 03:20:17] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10946472/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 07:45:58]  *** The last 200 lines of the pilot log: ***
[2025-12-03 07:45:58] 2025-12-03 06:45:44,968 | INFO     | mean y: 2990701.3486590036
[2025-12-03 07:45:58] 2025-12-03 06:45:44,968 | INFO     | intersect: -76089799082.97397
[2025-12-03 07:45:58] 2025-12-03 06:45:44,969 | INFO     | chi2: 3.3194975954304744
[2025-12-03 07:45:58] 2025-12-03 06:45:44,969 | INFO     | sum of square deviations: 5202255680.0
[2025-12-03 07:45:58] 2025-12-03 06:45:44,970 | INFO     | sum of deviations: 258540433146.5
[2025-12-03 07:45:58] 2025-12-03 06:45:44,970 | INFO     | mean x: 1764736218.5
[2025-12-03 07:45:58] 2025-12-03 06:45:44,970 | INFO     | mean y: 3000622.56640625
[2025-12-03 07:45:58] 2025-12-03 06:45:44,970 | INFO     | intersect: -87700429271.19585
[2025-12-03 07:45:58] 2025-12-03 06:45:44,970 | INFO     | chi2: 1.943219001748969
[2025-12-03 07:45:58] 2025-12-03 06:45:44,970 | INFO     | current chi2=1.943219001748969 (change=41.46044858041323 %)
[2025-12-03 07:45:58] 2025-12-03 06:45:44,970 | INFO     | sum of square deviations: 4903347750.0
[2025-12-03 07:45:58] 2025-12-03 06:45:44,971 | INFO     | sum of deviations: 218003842829.0
[2025-12-03 07:45:58] 2025-12-03 06:45:44,971 | INFO     | mean x: 1764736066.0
[2025-12-03 07:45:58] 2025-12-03 06:45:44,971 | INFO     | mean y: 2979944.454183267
[2025-12-03 07:45:58] 2025-12-03 06:45:44,971 | INFO     | intersect: -78457546125.09326
[2025-12-03 07:45:58] 2025-12-03 06:45:44,971 | INFO     | chi2: 1.7162007042316247
[2025-12-03 07:45:58] 2025-12-03 06:45:44,971 | INFO     | current chi2=1.7162007042316247 (change=11.682589420596411 %)
[2025-12-03 07:45:58] 2025-12-03 06:45:44,971 | INFO     | right removable region: 250
[2025-12-03 07:45:58] 2025-12-03 06:45:44,972 | INFO     | sum of square deviations: 5202255680.0
[2025-12-03 07:45:58] 2025-12-03 06:45:44,972 | INFO     | sum of deviations: 187144626212.0
[2025-12-03 07:45:58] 2025-12-03 06:45:44,972 | INFO     | mean x: 1764736523.5
[2025-12-03 07:45:58] 2025-12-03 06:45:44,973 | INFO     | mean y: 3015327.5703125
[2025-12-03 07:45:58] 2025-12-03 06:45:44,973 | INFO     | intersect: -63481168720.27561
[2025-12-03 07:45:58] 2025-12-03 06:45:44,973 | INFO     | chi2: 2.009457268489607
[2025-12-03 07:45:58] 2025-12-03 06:45:44,973 | INFO     | current chi2=2.009457268489607 (change=39.46501810226438 %)
[2025-12-03 07:45:58] 2025-12-03 06:45:44,973 | INFO     | sum of square deviations: 4903347750.0
[2025-12-03 07:45:58] 2025-12-03 06:45:44,974 | INFO     | sum of deviations: 174255152544.99997
[2025-12-03 07:45:58] 2025-12-03 06:45:44,974 | INFO     | mean x: 1764736676.0
[2025-12-03 07:45:58] 2025-12-03 06:45:44,974 | INFO     | mean y: 3021897.980079681
[2025-12-03 07:45:58] 2025-12-03 06:45:44,974 | INFO     | intersect: -62712182969.57928
[2025-12-03 07:45:58] 2025-12-03 06:45:44,974 | INFO     | chi2: 2.0087362557472646
[2025-12-03 07:45:58] 2025-12-03 06:45:44,974 | INFO     | current chi2=2.0087362557472646 (change=0.03588096913771189 %)
[2025-12-03 07:45:58] 2025-12-03 06:45:44,974 | INFO     | left removable region: 20
[2025-12-03 07:45:58] 2025-12-03 06:45:44,974 | INFO     | sum of square deviations: 3772712597.5
[2025-12-03 07:45:58] 2025-12-03 06:45:44,975 | INFO     | sum of deviations: 134563438305.0
[2025-12-03 07:45:58] 2025-12-03 06:45:44,975 | INFO     | mean x: 1764736645.5
[2025-12-03 07:45:58] 2025-12-03 06:45:44,975 | INFO     | mean y: 3017798.7391304346
[2025-12-03 07:45:58] 2025-12-03 06:45:44,975 | INFO     | intersect: -62940825545.88021
[2025-12-03 07:45:58] 2025-12-03 06:45:44,975 | INFO     | chi2: 0.32396151245801563
[2025-12-03 07:45:58] 2025-12-03 06:45:44,976 | INFO     | current memory leak: 35.67 B/s (using 230 data points, chi2=0.32)
[2025-12-03 07:45:58] 2025-12-03 06:45:44,976 | INFO     | could have reported an average CPU frequency of 2876 MHz (12 samples)
[2025-12-03 07:45:58] 2025-12-03 06:45:44,976 | INFO     | ..............................
[2025-12-03 07:45:58] 2025-12-03 06:45:44,976 | INFO     | . Timing measurements:
[2025-12-03 07:45:58] 2025-12-03 06:45:44,976 | INFO     | . get job = 0 s
[2025-12-03 07:45:58] 2025-12-03 06:45:44,976 | INFO     | . initial setup = 1 s
[2025-12-03 07:45:58] 2025-12-03 06:45:44,976 | INFO     | . payload setup = 3 s
[2025-12-03 07:45:58] 2025-12-03 06:45:44,976 | INFO     | . stage-in = 0 s
[2025-12-03 07:45:58] 2025-12-03 06:45:44,976 | INFO     | . payload execution = 15898 s
[2025-12-03 07:45:58] 2025-12-03 06:45:44,976 | INFO     | . stage-out = 1 s
[2025-12-03 07:45:58] 2025-12-03 06:45:44,976 | INFO     | . log creation = 0 s
[2025-12-03 07:45:58] 2025-12-03 06:45:44,976 | INFO     | ..............................
[2025-12-03 07:45:58] 2025-12-03 06:45:45,025 | INFO     | 
[2025-12-03 07:45:58] 2025-12-03 06:45:45,025 | INFO     | time since job start (15923s) is within the limit (172800.0s)
[2025-12-03 07:45:58] 2025-12-03 06:45:45,026 | INFO     | job summary report
[2025-12-03 07:45:58] 2025-12-03 06:45:45,026 | INFO     | --------------------------------------------------
[2025-12-03 07:45:58] 2025-12-03 06:45:45,026 | INFO     | PanDA job id: 6899449064
[2025-12-03 07:45:58] 2025-12-03 06:45:45,026 | INFO     | task id: 47556185
[2025-12-03 07:45:58] 2025-12-03 06:45:45,026 | INFO     | errors: (none)
[2025-12-03 07:45:58] 2025-12-03 06:45:45,026 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 07:45:58] 2025-12-03 06:45:45,026 | INFO     | pilot state: finished 
[2025-12-03 07:45:58] 2025-12-03 06:45:45,026 | INFO     | transexitcode: 0
[2025-12-03 07:45:58] 2025-12-03 06:45:45,026 | INFO     | exeerrorcode: 0
[2025-12-03 07:45:58] 2025-12-03 06:45:45,026 | INFO     | exeerrordiag: 
[2025-12-03 07:45:58] 2025-12-03 06:45:45,026 | INFO     | exitcode: 0
[2025-12-03 07:45:58] 2025-12-03 06:45:45,026 | INFO     | exitmsg: OK
[2025-12-03 07:45:58] 2025-12-03 06:45:45,026 | INFO     | cpuconsumptiontime: 121560 s
[2025-12-03 07:45:58] 2025-12-03 06:45:45,026 | INFO     | nevents: 1000
[2025-12-03 07:45:58] 2025-12-03 06:45:45,026 | INFO     | neventsw: 0
[2025-12-03 07:45:58] 2025-12-03 06:45:45,026 | INFO     | pid: 28917
[2025-12-03 07:45:58] 2025-12-03 06:45:45,026 | INFO     | pgrp: 28917
[2025-12-03 07:45:58] 2025-12-03 06:45:45,026 | INFO     | corecount: 8
[2025-12-03 07:45:58] 2025-12-03 06:45:45,026 | INFO     | event service: False
[2025-12-03 07:45:58] 2025-12-03 06:45:45,026 | INFO     | sizes: {0: 2284438, 2: 2284700, 11: 2284728, 15904: 2317061, 15905: 2317060, 15907: 2326324, 15910: 2326514}
[2025-12-03 07:45:58] 2025-12-03 06:45:45,026 | INFO     | --------------------------------------------------
[2025-12-03 07:45:58] 2025-12-03 06:45:45,026 | INFO     | 
[2025-12-03 07:45:58] 2025-12-03 06:45:45,027 | INFO     | executing command: ls -lF /tmp/job_10946472/atlas/pilot/slots/0
[2025-12-03 07:45:58] 2025-12-03 06:45:45,035 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 07:45:58] 2025-12-03 06:45:45,035 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 07:45:58] 2025-12-03 06:45:45,035 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 07:45:58] 2025-12-03 06:45:45,035 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 07:45:58] 2025-12-03 06:45:45,035 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 07:45:58] 2025-12-03 06:45:45,035 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 07:45:58] 2025-12-03 06:45:45,035 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 07:45:58] 2025-12-03 06:45:45,035 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 07:45:58] 2025-12-03 06:45:45,035 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 07:45:58] 2025-12-03 06:45:45,035 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 07:45:58] 2025-12-03 06:45:45,035 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 07:45:58] 2025-12-03 06:45:45,035 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 07:45:58] 2025-12-03 06:45:45,035 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 07:45:58] 2025-12-03 06:45:45,035 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 07:45:58] 2025-12-03 06:45:45,035 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 07:45:58] 2025-12-03 06:45:45,035 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 07:45:58] 2025-12-03 06:45:45,035 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 07:45:58] 2025-12-03 06:45:45,035 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 07:45:58] 2025-12-03 06:45:45,035 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 07:45:58] 2025-12-03 06:45:45,035 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 07:45:58] 2025-12-03 06:45:45,035 | INFO     | job 6899449064 has completed (purged errors)
[2025-12-03 07:45:58] 2025-12-03 06:45:45,036 | INFO     | overall cleanup function is called
[2025-12-03 07:45:58] 2025-12-03 06:45:46,043 | INFO     | --- collectZombieJob: --- 10, [28917]
[2025-12-03 07:45:58] 2025-12-03 06:45:46,043 | INFO     | zombie collector waiting for pid 28917
[2025-12-03 07:45:58] 2025-12-03 06:45:46,043 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 07:45:58] 2025-12-03 06:45:46,043 | INFO     | collected zombie processes
[2025-12-03 07:45:58] 2025-12-03 06:45:46,043 | INFO     | will attempt to kill all subprocesses of pid=28917
[2025-12-03 07:45:58] 2025-12-03 06:45:46,135 | INFO     | process IDs to be killed: [28917] (in reverse order)
[2025-12-03 07:45:58] 2025-12-03 06:45:46,166 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 07:45:58] 2025-12-03 06:45:46,166 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 07:45:58] 2025-12-03 06:45:46,170 | INFO     | did not find any defunct processes belonging to 28917
[2025-12-03 07:45:58] 2025-12-03 06:45:46,172 | INFO     | did not find any defunct processes belonging to 28917
[2025-12-03 07:45:58] 2025-12-03 06:45:46,173 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 07:45:58] 2025-12-03 06:45:46,173 | INFO     | ready for new job
[2025-12-03 07:45:58] 2025-12-03 06:45:46,173 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 07:45:58] 2025-12-03 06:45:46,174 | INFO     | ***************************************
[2025-12-03 07:45:58] 2025-12-03 06:45:46,174 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 07:45:58] 2025-12-03 06:45:46,174 | INFO     | ***************************************
[2025-12-03 07:45:58] 2025-12-03 06:45:46,174 | INFO     | 
[2025-12-03 07:45:58] 2025-12-03 06:45:46,188 | INFO     | architecture information:
[2025-12-03 07:45:58] 2025-12-03 06:45:46,188 | INFO     | executing command: cat /etc/os-release
[2025-12-03 07:45:58] 2025-12-03 06:45:46,194 | INFO     | cat /etc/os-release:
[2025-12-03 07:45:58] NAME="CentOS Linux"
[2025-12-03 07:45:58] VERSION="7 (Core)"
[2025-12-03 07:45:58] ID="centos"
[2025-12-03 07:45:58] ID_LIKE="rhel fedora"
[2025-12-03 07:45:58] VERSION_ID="7"
[2025-12-03 07:45:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 07:45:58] ANSI_COLOR="0;31"
[2025-12-03 07:45:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 07:45:58] HOME_URL="https://www.centos.org/"
[2025-12-03 07:45:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 07:45:58] 
[2025-12-03 07:45:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 07:45:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 07:45:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 07:45:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 07:45:58] 
[2025-12-03 07:45:58] 2025-12-03 06:45:46,194 | INFO     | ***************************************
[2025-12-03 07:45:58] 2025-12-03 06:45:46,367 | WARNING  | process 28917 can no longer be monitored (due to stat problems) - aborting
[2025-12-03 07:45:58] 2025-12-03 06:45:46,440 | INFO     | using path: /tmp/job_10946472/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 07:45:58] 2025-12-03 06:45:46,440 | INFO     | using path: /tmp/job_10946472/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 07:45:58] 2025-12-03 06:45:46,440 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-12-03 07:45:58] 2025-12-03 06:45:46,440 | WARNING  | maxPSS not found in memory monitor output
[2025-12-03 07:45:58] 2025-12-03 06:45:46,441 | INFO     | skipping file size check of payload stdout file (/tmp/job_10946472/atlas/pilot/slots/0/PanDA_Pilot-6899449064/payload.stdout) since it has not been created yet
[2025-12-03 07:45:58] 2025-12-03 06:45:46,441 | INFO     | executing command: df -mP /tmp/job_10946472/atlas/pilot/slots/0
[2025-12-03 07:45:58] 2025-12-03 06:45:46,447 | INFO     | sufficient remaining disk space (224711933952 B)
[2025-12-03 07:45:58] 2025-12-03 06:45:46,447 | WARNING  | skipping size check of workdir since it has not been created yet
[2025-12-03 07:45:58] 2025-12-03 06:45:46,447 | INFO     | output file size check: skipping output file /tmp/job_10946472/atlas/pilot/slots/0/PanDA_Pilot-6899449064/HITS.47556185._000795.pool.root.1 since it does not exist
[2025-12-03 07:45:58] 2025-12-03 06:45:46,537 | INFO     | number of running child processes to parent process 28917: 1
[2025-12-03 07:45:58] 2025-12-03 06:45:46,537 | INFO     | maximum number of monitored processes: 16
[2025-12-03 07:45:58] 2025-12-03 06:45:46,538 | INFO     | aborting job monitoring since job object (job id=6899449064) has expired
[2025-12-03 07:45:58] 2025-12-03 06:45:46,697 | INFO     | executing command: df -mP /tmp/job_10946472/atlas/pilot/slots/0
[2025-12-03 07:45:58] 2025-12-03 06:45:46,703 | INFO     | sufficient remaining disk space (224711933952 B)
[2025-12-03 07:45:58] 2025-12-03 06:45:46,704 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 07:45:58] 2025-12-03 06:45:46,704 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 07:45:58] 2025-12-03 06:45:46,704 | INFO     | update_server=False
[2025-12-03 07:45:58] 2025-12-03 06:45:46,704 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 07:45:58] 2025-12-03 06:45:46,704 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 07:45:58] 2025-12-03 06:45:46,704 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-12-03 07:45:58] 2025-12-03 06:45:46,704 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 07:45:58] 2025-12-03 06:45:46,704 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 07:45:58] 2025-12-03 06:45:46,704 | INFO     | will abort loop
[2025-12-03 07:45:58] 2025-12-03 06:45:46,704 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 07:45:58] 2025-12-03 06:45:46,704 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 07:45:58] 2025-12-03 06:45:46,747 | INFO     | all job control threads have been joined
[2025-12-03 07:45:58] 2025-12-03 06:45:46,915 | INFO     | all data control threads have been joined
[2025-12-03 07:45:58] 2025-12-03 06:45:47,485 | INFO     | all payload control threads have been joined
[2025-12-03 07:45:58] 2025-12-03 06:45:47,709 | INFO     | [job] retrieve thread has finished
[2025-12-03 07:45:58] 2025-12-03 06:45:47,709 | INFO     | [job] queue monitor thread has finished
[2025-12-03 07:45:58] 2025-12-03 06:45:47,710 | INFO     | [job] job monitor thread has finished
[2025-12-03 07:45:58] 2025-12-03 06:45:47,742 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 07:45:58] 2025-12-03 06:45:47,752 | INFO     | [job] control thread has finished
[2025-12-03 07:45:58] 2025-12-03 06:45:47,794 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 07:45:58] 2025-12-03 06:45:47,920 | INFO     | [data] control thread has finished
[2025-12-03 07:45:58] 2025-12-03 06:45:47,951 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 07:45:58] 2025-12-03 06:45:48,036 | INFO     | [data] copytool_in thread has finished
[2025-12-03 07:45:58] 2025-12-03 06:45:48,175 | INFO     | [monitor] cgroup control has ended
[2025-12-03 07:45:58] 2025-12-03 06:45:48,292 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 07:45:58] 2025-12-03 06:45:48,300 | INFO     | [payload] failed_post thread has finished
[2025-12-03 07:45:58] 2025-12-03 06:45:48,490 | INFO     | [payload] control thread has finished
[2025-12-03 07:45:58] 2025-12-03 06:45:48,510 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 07:45:58] 2025-12-03 06:45:48,869 | INFO     | [payload] validate_post thread has finished
[2025-12-03 07:45:58] 2025-12-03 06:45:49,010 | INFO     | [job] validate thread has finished
[2025-12-03 07:45:58] 2025-12-03 06:45:49,071 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 07:45:58] 2025-12-03 06:45:49,957 | INFO     | [data] copytool_out thread has finished
[2025-12-03 07:45:58] 2025-12-03 06:45:52,515 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 07:45:58] 2025-12-03 06:45:53,143 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456062920448)>']
[2025-12-03 07:45:58] 2025-12-03 06:45:53,740 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 07:45:58] 2025-12-03 06:45:53,740 | INFO     | [monitor] control thread has ended
[2025-12-03 07:45:58] 2025-12-03 06:45:58,168 | INFO     | all workflow threads have been joined
[2025-12-03 07:45:58] 2025-12-03 06:45:58,168 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 07:45:58] 2025-12-03 06:45:58,169 | INFO     | traces error code: 0
[2025-12-03 07:45:58] 2025-12-03 06:45:58,169 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 07:45:58] 2025-12-03 06:45:58,221 [wrapper] ==== pilot stdout END ====
[2025-12-03 07:45:58] 2025-12-03 06:45:58,223 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 07:45:58] 2025-12-03 06:45:58,224 [wrapper] pilotpid: 20737
[2025-12-03 07:45:58] 2025-12-03 06:45:58,225 [wrapper] Pilot exit status: 0
[2025-12-03 07:45:58] 2025-12-03 06:45:58,230 [wrapper] pandaids: 6899449064
[2025-12-03 07:45:58] 2025-12-03 06:45:58,251 [wrapper] cleanup supervisor_pilot 24377 20738
[2025-12-03 07:45:58] 2025-12-03 06:45:58,252 [wrapper] Test setup, not cleaning
[2025-12-03 07:45:58] 2025-12-03 06:45:58,253 [wrapper] apfmon messages muted
[2025-12-03 07:45:58] 2025-12-03 06:45:58,254 [wrapper] ==== wrapper stdout END ====
[2025-12-03 07:45:58] 2025-12-03 06:45:58,255 [wrapper] ==== wrapper stderr END ====
[2025-12-03 07:45:58]  *** Error codes and diagnostics ***
[2025-12-03 07:45:58]     "exeErrorCode": 0,
[2025-12-03 07:45:58]     "exeErrorDiag": "",
[2025-12-03 07:45:58]     "pilotErrorCode": 0,
[2025-12-03 07:45:58]     "pilotErrorDiag": "",
[2025-12-03 07:45:58]  *** Listing of results directory ***
[2025-12-03 07:45:58] total 1302176
[2025-12-03 07:45:58] -rw------- 1 mf493845 unix-user    576529 Nov 27 03:19 pilot3.tar.gz
[2025-12-03 07:45:58] -rwx------ 1 mf493845 unix-user     36292 Nov 27 03:45 runpilot2-wrapper.sh
[2025-12-03 07:45:58] -rw------- 1 mf493845 unix-user      5112 Nov 27 03:45 queuedata.json
[2025-12-03 07:45:58] -rw------- 1 mf493845 unix-user       100 Dec  3 01:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 07:45:58] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  3 01:35 run_atlas
[2025-12-03 07:45:58] -rw------- 1 mf493845 unix-user       105 Dec  3 01:35 job.xml
[2025-12-03 07:45:58] -rw-r--r-- 2 mf493845 unix-user 411317576 Dec  3 03:20 EVNT.47483658._004316.pool.root.1
[2025-12-03 07:45:58] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 03:20 start_atlas.sh
[2025-12-03 07:45:58] drwxrwx--x 2 mf493845 unix-user       100 Dec  3 03:20 shared
[2025-12-03 07:45:58] -rw-r--r-- 2 mf493845 unix-user    590101 Dec  3 03:20 input.tar.gz
[2025-12-03 07:45:58] -rw------- 1 mf493845 unix-user      6392 Dec  3 03:20 init_data.xml
[2025-12-03 07:45:58] -rw------- 1 mf493845 unix-user         0 Dec  3 03:20 boinc_setup_complete
[2025-12-03 07:45:58] -rw------- 1 mf493845 unix-user      8192 Dec  3 03:20 boinc_mmap_file
[2025-12-03 07:45:58] -rw------- 1 mf493845 unix-user         0 Dec  3 03:20 boinc_lockfile
[2025-12-03 07:45:58] -rw------- 1 mf493845 unix-user      2784 Dec  3 03:20 pandaJob.out
[2025-12-03 07:45:58] -rw------- 1 mf493845 unix-user    989292 Dec  3 03:20 agis_schedconf.cvmfs.json
[2025-12-03 07:45:58] drwx------ 5 mf493845 unix-user       440 Dec  3 03:20 pilot3
[2025-12-03 07:45:58] -rw------- 1 mf493845 unix-user        95 Dec  3 07:45 pilot_heartbeat.json
[2025-12-03 07:45:58] -rw------- 1 mf493845 unix-user 910520179 Dec  3 07:45 HITS.47556185._000795.pool.root.1
[2025-12-03 07:45:58] -rw------- 1 mf493845 unix-user      1032 Dec  3 07:45 memory_monitor_summary.json
[2025-12-03 07:45:58] -rw------- 1 mf493845 unix-user   1516240 Dec  3 07:45 agis_ddmendpoints.agis.ALL.json
[2025-12-03 07:45:58] -rw------- 1 mf493845 unix-user   1561075 Dec  3 07:45 log.47556185._000795.job.log.tgz.1
[2025-12-03 07:45:58] -rw------- 1 mf493845 unix-user      8588 Dec  3 07:45 heartbeat.json
[2025-12-03 07:45:58] -rw------- 1 mf493845 unix-user      6124 Dec  3 07:45 pilotlog.txt
[2025-12-03 07:45:58] -rw------- 1 mf493845 unix-user   2292559 Dec  3 07:45 log.47556185._000795.job.log.1
[2025-12-03 07:45:58] -rw------- 1 mf493845 unix-user       353 Dec  3 07:45 output.list
[2025-12-03 07:45:58] -rw------- 1 mf493845 unix-user       620 Dec  3 07:45 runtime_log
[2025-12-03 07:45:58] -rw------- 1 mf493845 unix-user   3870720 Dec  3 07:45 result.tar.gz
[2025-12-03 07:45:58] -rw------- 1 mf493845 unix-user      9221 Dec  3 07:45 runtime_log.err
[2025-12-03 07:45:58] -rw------- 1 mf493845 unix-user       651 Dec  3 07:45 BP3NDmqBhi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmEhNKDmhwUJMn.diag
[2025-12-03 07:45:58] -rw------- 1 mf493845 unix-user     22038 Dec  3 07:45 stderr.txt
[2025-12-03 07:45:58] HITS file was successfully produced:
[2025-12-03 07:45:58] -rw------- 1 mf493845 unix-user 910520179 Dec  3 07:45 shared/HITS.pool.root.1
[2025-12-03 07:45:58]  *** Contents of shared directory: ***
[2025-12-03 07:45:58] total 1295236
[2025-12-03 07:45:58] -rw-r--r-- 2 mf493845 unix-user 411317576 Dec  3 03:20 ATLAS.root_0
[2025-12-03 07:45:58] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 03:20 start_atlas.sh
[2025-12-03 07:45:58] -rw-r--r-- 2 mf493845 unix-user    590101 Dec  3 03:20 input.tar.gz
[2025-12-03 07:45:58] -rw------- 1 mf493845 unix-user 910520179 Dec  3 07:45 HITS.pool.root.1
[2025-12-03 07:45:58] -rw------- 1 mf493845 unix-user   3870720 Dec  3 07:45 result.tar.gz
07:45:59 (15999): run_atlas exited; CPU time 121722.494920
07:45:59 (15999): called boinc_finish(0)

</stderr_txt>
]]>

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