Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
03:07:17 (20050): wrapper (7.7.26015): starting
03:07:17 (20050): wrapper: running run_atlas (--nthreads 8)
[2025-12-03 03:07:17] Arguments: --nthreads 8
[2025-12-03 03:07:17] Threads: 8
[2025-12-03 03:07:17] Checking for CVMFS
[2025-12-03 03:07:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 03:07:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 03:07:17] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 03:07:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 03:07:17] 2.11.0.0 4617 75620 91900 153576 2 239 3901389 4096001 1514 130560 5 2325619 99.183 4041066 414 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-03 03:07:17] CVMFS is ok
[2025-12-03 03:07:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-03 03:07:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-03 03:07:17] Further information can be found at the LHC@home message board.
[2025-12-03 03:07:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 03:07:17] Checking for apptainer binary...
[2025-12-03 03:07:17] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-03 03:07:17] apptainer is not installed, using version from CVMFS
[2025-12-03 03:07:17] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 03:07:17] WARNING: Environment variable TMPDIR already has value [/tmp/job_10946578/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node301
[2025-12-03 03:07:17] apptainer works
[2025-12-03 03:07:17] Set ATHENA_PROC_NUMBER=8
[2025-12-03 03:07:17] Set ATHENA_CORE_NUMBER=8
[2025-12-03 03:07:17] Starting ATLAS job with PandaID=6901294273
[2025-12-03 03:07:17] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10946578/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 06:45:54]  *** The last 200 lines of the pilot log: ***
[2025-12-03 06:45:54] 2025-12-03 05:45:22,290 | INFO     | using path: /tmp/job_10946578/atlas/pilot/slots/0/PanDA_Pilot-6901294273/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 06:45:54] 2025-12-03 05:45:22,290 | INFO     | extracted standard info from prmon json
[2025-12-03 06:45:54] 2025-12-03 05:45:22,290 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 06:45:54] 2025-12-03 05:45:22,290 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 06:45:54] 2025-12-03 05:45:22,292 | INFO     | fitting pss+swap vs Time
[2025-12-03 06:45:54] 2025-12-03 05:45:22,292 | INFO     | sum of square deviations: 3038856977.5
[2025-12-03 06:45:54] 2025-12-03 05:45:22,293 | INFO     | sum of deviations: 119100150066.50009
[2025-12-03 06:45:54] 2025-12-03 05:45:22,293 | INFO     | mean x: 1764734158.5
[2025-12-03 06:45:54] 2025-12-03 05:45:22,293 | INFO     | mean y: 3404223.920560748
[2025-12-03 06:45:54] 2025-12-03 05:45:22,293 | INFO     | intersect: -69160792926.8579
[2025-12-03 06:45:54] 2025-12-03 05:45:22,293 | INFO     | chi2: 2.6509746238215763
[2025-12-03 06:45:54] 2025-12-03 05:45:22,294 | INFO     | sum of square deviations: 2830787960.0
[2025-12-03 06:45:54] 2025-12-03 05:45:22,294 | INFO     | sum of deviations: 146892835896.99997
[2025-12-03 06:45:54] 2025-12-03 05:45:22,294 | INFO     | mean x: 1764734006.0
[2025-12-03 06:45:54] 2025-12-03 05:45:22,294 | INFO     | mean y: 3424285.076555024
[2025-12-03 06:45:54] 2025-12-03 05:45:22,294 | INFO     | intersect: -91570648520.15515
[2025-12-03 06:45:54] 2025-12-03 05:45:22,295 | INFO     | chi2: 1.8030546991932475
[2025-12-03 06:45:54] 2025-12-03 05:45:22,295 | INFO     | current chi2=1.8030546991932475 (change=31.985214683269565 %)
[2025-12-03 06:45:54] 2025-12-03 05:45:22,295 | INFO     | sum of square deviations: 2632440055.0
[2025-12-03 06:45:54] 2025-12-03 05:45:22,295 | INFO     | sum of deviations: 140647771644.5
[2025-12-03 06:45:54] 2025-12-03 05:45:22,295 | INFO     | mean x: 1764733853.5
[2025-12-03 06:45:54] 2025-12-03 05:45:22,295 | INFO     | mean y: 3419481.8284313725
[2025-12-03 06:45:54] 2025-12-03 05:45:22,296 | INFO     | intersect: -94283963651.15103
[2025-12-03 06:45:54] 2025-12-03 05:45:22,296 | INFO     | chi2: 1.8011971240001883
[2025-12-03 06:45:54] 2025-12-03 05:45:22,296 | INFO     | current chi2=1.8011971240001883 (change=0.10302378479645276 %)
[2025-12-03 06:45:54] 2025-12-03 05:45:22,296 | INFO     | right removable region: 203
[2025-12-03 06:45:54] 2025-12-03 05:45:22,296 | INFO     | sum of square deviations: 2830787960.0
[2025-12-03 06:45:54] 2025-12-03 05:45:22,297 | INFO     | sum of deviations: 64094422335.0
[2025-12-03 06:45:54] 2025-12-03 05:45:22,297 | INFO     | mean x: 1764734311.0
[2025-12-03 06:45:54] 2025-12-03 05:45:22,297 | INFO     | mean y: 3444182.186602871
[2025-12-03 06:45:54] 2025-12-03 05:45:22,297 | INFO     | intersect: -39953496371.6722
[2025-12-03 06:45:54] 2025-12-03 05:45:22,297 | INFO     | chi2: 0.8943015995183368
[2025-12-03 06:45:54] 2025-12-03 05:45:22,297 | INFO     | current chi2=0.8943015995183368 (change=66.26517690957242 %)
[2025-12-03 06:45:54] 2025-12-03 05:45:22,297 | INFO     | sum of square deviations: 2632440055.0
[2025-12-03 06:45:54] 2025-12-03 05:45:22,298 | INFO     | sum of deviations: 54478257773.0
[2025-12-03 06:45:54] 2025-12-03 05:45:22,298 | INFO     | mean x: 1764734463.5
[2025-12-03 06:45:54] 2025-12-03 05:45:22,298 | INFO     | mean y: 3451580.8235294116
[2025-12-03 06:45:54] 2025-12-03 05:45:22,298 | INFO     | intersect: -36517668366.74916
[2025-12-03 06:45:54] 2025-12-03 05:45:22,298 | INFO     | chi2: 0.8853082461738535
[2025-12-03 06:45:54] 2025-12-03 05:45:22,298 | INFO     | current chi2=0.8853082461738535 (change=1.0056286770958478 %)
[2025-12-03 06:45:54] 2025-12-03 05:45:22,298 | INFO     | left removable region: 20
[2025-12-03 06:45:54] 2025-12-03 05:45:22,298 | INFO     | sum of square deviations: 1900284932.0
[2025-12-03 06:45:54] 2025-12-03 05:45:22,299 | INFO     | sum of deviations: 60595157883.99999
[2025-12-03 06:45:54] 2025-12-03 05:45:22,299 | INFO     | mean x: 1764734433.0
[2025-12-03 06:45:54] 2025-12-03 05:45:22,299 | INFO     | mean y: 3484586.393442623
[2025-12-03 06:45:54] 2025-12-03 05:45:22,299 | INFO     | intersect: -56269319449.589
[2025-12-03 06:45:54] 2025-12-03 05:45:22,299 | INFO     | chi2: 0.01506090943397699
[2025-12-03 06:45:54] 2025-12-03 05:45:22,299 | INFO     | current memory leak: 31.89 B/s (using 183 data points, chi2=0.02)
[2025-12-03 06:45:54] 2025-12-03 05:45:22,299 | INFO     | could have reported an average CPU frequency of 2839 MHz (11 samples)
[2025-12-03 06:45:54] 2025-12-03 05:45:22,299 | INFO     | ..............................
[2025-12-03 06:45:54] 2025-12-03 05:45:22,299 | INFO     | . Timing measurements:
[2025-12-03 06:45:54] 2025-12-03 05:45:22,299 | INFO     | . get job = 0 s
[2025-12-03 06:45:54] 2025-12-03 05:45:22,299 | INFO     | . initial setup = 1 s
[2025-12-03 06:45:54] 2025-12-03 05:45:22,299 | INFO     | . payload setup = 4 s
[2025-12-03 06:45:54] 2025-12-03 05:45:22,299 | INFO     | . stage-in = 0 s
[2025-12-03 06:45:54] 2025-12-03 05:45:22,299 | INFO     | . payload execution = 13054 s
[2025-12-03 06:45:54] 2025-12-03 05:45:22,299 | INFO     | . stage-out = 1 s
[2025-12-03 06:45:54] 2025-12-03 05:45:22,300 | INFO     | . log creation = 0 s
[2025-12-03 06:45:54] 2025-12-03 05:45:22,300 | INFO     | ..............................
[2025-12-03 06:45:54] 2025-12-03 05:45:22,349 | INFO     | 
[2025-12-03 06:45:54] 2025-12-03 05:45:22,349 | INFO     | job summary report
[2025-12-03 06:45:54] 2025-12-03 05:45:22,349 | INFO     | --------------------------------------------------
[2025-12-03 06:45:54] 2025-12-03 05:45:22,349 | INFO     | PanDA job id: 6901294273
[2025-12-03 06:45:54] 2025-12-03 05:45:22,349 | INFO     | task id: 47531111
[2025-12-03 06:45:54] 2025-12-03 05:45:22,350 | INFO     | errors: (none)
[2025-12-03 06:45:54] 2025-12-03 05:45:22,350 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 06:45:54] 2025-12-03 05:45:22,350 | INFO     | pilot state: finished 
[2025-12-03 06:45:54] 2025-12-03 05:45:22,350 | INFO     | transexitcode: 0
[2025-12-03 06:45:54] 2025-12-03 05:45:22,350 | INFO     | exeerrorcode: 0
[2025-12-03 06:45:54] 2025-12-03 05:45:22,350 | INFO     | exeerrordiag: 
[2025-12-03 06:45:54] 2025-12-03 05:45:22,350 | INFO     | exitcode: 0
[2025-12-03 06:45:54] 2025-12-03 05:45:22,350 | INFO     | exitmsg: OK
[2025-12-03 06:45:54] 2025-12-03 05:45:22,350 | INFO     | cpuconsumptiontime: 99214 s
[2025-12-03 06:45:54] 2025-12-03 05:45:22,350 | INFO     | nevents: 1000
[2025-12-03 06:45:54] 2025-12-03 05:45:22,350 | INFO     | neventsw: 0
[2025-12-03 06:45:54] 2025-12-03 05:45:22,350 | INFO     | pid: 31036
[2025-12-03 06:45:54] 2025-12-03 05:45:22,350 | INFO     | pgrp: 31036
[2025-12-03 06:45:54] 2025-12-03 05:45:22,350 | INFO     | corecount: 8
[2025-12-03 06:45:54] 2025-12-03 05:45:22,350 | INFO     | event service: False
[2025-12-03 06:45:54] 2025-12-03 05:45:22,350 | INFO     | sizes: {0: 2284576, 2: 2284838, 11: 2284866, 13061: 2335004, 13062: 2344028, 13063: 2344084, 13067: 2344458}
[2025-12-03 06:45:54] 2025-12-03 05:45:22,350 | INFO     | --------------------------------------------------
[2025-12-03 06:45:54] 2025-12-03 05:45:22,350 | INFO     | 
[2025-12-03 06:45:54] 2025-12-03 05:45:22,350 | INFO     | executing command: ls -lF /tmp/job_10946578/atlas/pilot/slots/0
[2025-12-03 06:45:54] 2025-12-03 05:45:22,360 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 06:45:54] 2025-12-03 05:45:22,360 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 06:45:54] 2025-12-03 05:45:22,360 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 06:45:54] 2025-12-03 05:45:22,360 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 06:45:54] 2025-12-03 05:45:22,360 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 06:45:54] 2025-12-03 05:45:22,360 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 06:45:54] 2025-12-03 05:45:22,360 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 06:45:54] 2025-12-03 05:45:22,360 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 06:45:54] 2025-12-03 05:45:22,360 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 06:45:54] 2025-12-03 05:45:22,360 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 06:45:54] 2025-12-03 05:45:22,360 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 06:45:54] 2025-12-03 05:45:22,360 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 06:45:54] 2025-12-03 05:45:22,360 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 06:45:54] 2025-12-03 05:45:22,360 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 06:45:54] 2025-12-03 05:45:22,360 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 06:45:54] 2025-12-03 05:45:22,360 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 06:45:54] 2025-12-03 05:45:22,360 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 06:45:54] 2025-12-03 05:45:22,360 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 06:45:54] 2025-12-03 05:45:22,360 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 06:45:54] 2025-12-03 05:45:22,360 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 06:45:54] 2025-12-03 05:45:22,360 | INFO     | job 6901294273 has completed (purged errors)
[2025-12-03 06:45:54] 2025-12-03 05:45:22,361 | INFO     | overall cleanup function is called
[2025-12-03 06:45:54] 2025-12-03 05:45:22,793 | WARNING  | process 31036 can no longer be monitored (due to stat problems) - aborting
[2025-12-03 06:45:54] 2025-12-03 05:45:22,878 | INFO     | using path: /tmp/job_10946578/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 06:45:54] 2025-12-03 05:45:22,982 | INFO     | number of running child processes to parent process 31036: 1
[2025-12-03 06:45:54] 2025-12-03 05:45:22,982 | INFO     | maximum number of monitored processes: 16
[2025-12-03 06:45:54] 2025-12-03 05:45:22,982 | INFO     | aborting job monitoring since job object (job id=6901294273) has expired
[2025-12-03 06:45:54] 2025-12-03 05:45:23,368 | INFO     | --- collectZombieJob: --- 10, [31036]
[2025-12-03 06:45:54] 2025-12-03 05:45:23,368 | INFO     | zombie collector waiting for pid 31036
[2025-12-03 06:45:54] 2025-12-03 05:45:23,368 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 06:45:54] 2025-12-03 05:45:23,368 | INFO     | collected zombie processes
[2025-12-03 06:45:54] 2025-12-03 05:45:23,368 | INFO     | will attempt to kill all subprocesses of pid=31036
[2025-12-03 06:45:54] 2025-12-03 05:45:23,477 | INFO     | process IDs to be killed: [31036] (in reverse order)
[2025-12-03 06:45:54] 2025-12-03 05:45:23,521 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 06:45:54] 2025-12-03 05:45:23,521 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 06:45:54] 2025-12-03 05:45:23,526 | INFO     | did not find any defunct processes belonging to 31036
[2025-12-03 06:45:54] 2025-12-03 05:45:23,529 | INFO     | did not find any defunct processes belonging to 31036
[2025-12-03 06:45:54] 2025-12-03 05:45:23,530 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 06:45:54] 2025-12-03 05:45:23,530 | INFO     | ready for new job
[2025-12-03 06:45:54] 2025-12-03 05:45:23,530 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 06:45:54] 2025-12-03 05:45:23,531 | INFO     | ***************************************
[2025-12-03 06:45:54] 2025-12-03 05:45:23,531 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 06:45:54] 2025-12-03 05:45:23,531 | INFO     | ***************************************
[2025-12-03 06:45:54] 2025-12-03 05:45:23,531 | INFO     | 
[2025-12-03 06:45:54] 2025-12-03 05:45:23,544 | INFO     | architecture information:
[2025-12-03 06:45:54] 2025-12-03 05:45:23,544 | INFO     | executing command: cat /etc/os-release
[2025-12-03 06:45:54] 2025-12-03 05:45:23,550 | INFO     | cat /etc/os-release:
[2025-12-03 06:45:54] NAME="CentOS Linux"
[2025-12-03 06:45:54] VERSION="7 (Core)"
[2025-12-03 06:45:54] ID="centos"
[2025-12-03 06:45:54] ID_LIKE="rhel fedora"
[2025-12-03 06:45:54] VERSION_ID="7"
[2025-12-03 06:45:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 06:45:54] ANSI_COLOR="0;31"
[2025-12-03 06:45:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 06:45:54] HOME_URL="https://www.centos.org/"
[2025-12-03 06:45:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 06:45:54] 
[2025-12-03 06:45:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 06:45:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 06:45:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 06:45:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 06:45:54] 
[2025-12-03 06:45:54] 2025-12-03 05:45:23,550 | INFO     | ***************************************
[2025-12-03 06:45:54] 2025-12-03 05:45:24,053 | INFO     | executing command: df -mP /tmp/job_10946578/atlas/pilot/slots/0
[2025-12-03 06:45:54] 2025-12-03 05:45:24,060 | INFO     | sufficient remaining disk space (220155871232 B)
[2025-12-03 06:45:54] 2025-12-03 05:45:24,060 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 06:45:54] 2025-12-03 05:45:24,060 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 06:45:54] 2025-12-03 05:45:24,060 | INFO     | update_server=False
[2025-12-03 06:45:54] 2025-12-03 05:45:24,060 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 06:45:54] 2025-12-03 05:45:24,060 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 06:45:54] 2025-12-03 05:45:24,060 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 06:45:54] 2025-12-03 05:45:24,060 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 06:45:54] 2025-12-03 05:45:24,061 | INFO     | aborting loop
[2025-12-03 06:45:54] 2025-12-03 05:45:24,323 | INFO     | all data control threads have been joined
[2025-12-03 06:45:54] 2025-12-03 05:45:24,504 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 06:45:54] 2025-12-03 05:45:24,965 | INFO     | all payload control threads have been joined
[2025-12-03 06:45:54] 2025-12-03 05:45:25,065 | INFO     | [job] retrieve thread has finished
[2025-12-03 06:45:54] 2025-12-03 05:45:25,066 | INFO     | [job] queue monitor thread has finished
[2025-12-03 06:45:54] 2025-12-03 05:45:25,066 | INFO     | [job] job monitor thread has finished
[2025-12-03 06:45:54] 2025-12-03 05:45:25,241 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 06:45:54] 2025-12-03 05:45:25,248 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 06:45:54] 2025-12-03 05:45:25,329 | INFO     | [data] control thread has finished
[2025-12-03 06:45:54] 2025-12-03 05:45:25,387 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 06:45:54] 2025-12-03 05:45:25,595 | INFO     | all job control threads have been joined
[2025-12-03 06:45:54] 2025-12-03 05:45:25,675 | INFO     | [job] validate thread has finished
[2025-12-03 06:45:54] 2025-12-03 05:45:25,776 | INFO     | [payload] failed_post thread has finished
[2025-12-03 06:45:54] 2025-12-03 05:45:25,856 | INFO     | [data] copytool_in thread has finished
[2025-12-03 06:45:54] 2025-12-03 05:45:25,933 | INFO     | [payload] validate_post thread has finished
[2025-12-03 06:45:54] 2025-12-03 05:45:25,970 | INFO     | [payload] control thread has finished
[2025-12-03 06:45:54] 2025-12-03 05:45:26,009 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 06:45:54] 2025-12-03 05:45:26,066 | INFO     | [data] copytool_out thread has finished
[2025-12-03 06:45:54] 2025-12-03 05:45:26,601 | INFO     | [job] control thread has finished
[2025-12-03 06:45:54] 2025-12-03 05:45:28,509 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 06:45:54] 2025-12-03 05:45:43,880 | INFO     | [monitor] cgroup control has ended
[2025-12-03 06:45:54] 2025-12-03 05:45:44,857 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456065021696)>']
[2025-12-03 06:45:54] 2025-12-03 05:45:49,882 | INFO     | all workflow threads have been joined
[2025-12-03 06:45:54] 2025-12-03 05:45:49,882 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 06:45:54] 2025-12-03 05:45:49,883 | INFO     | traces error code: 0
[2025-12-03 06:45:54] 2025-12-03 05:45:49,883 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 06:45:54] 2025-12-03 05:45:54,526 | INFO     | PID=23783 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-03 06:45:54] 2025-12-03 05:45:54,526 | INFO     | .. there are 5 such processes running
[2025-12-03 06:45:54] 2025-12-03 05:45:54,527 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 06:45:54] 2025-12-03 05:45:54,527 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 06:45:54] 2025-12-03 05:45:54,527 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 06:45:54] 2025-12-03 05:45:54,527 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 06:45:54] 2025-12-03 05:45:54,527 | INFO     | [monitor] control thread has ended
[2025-12-03 06:45:54] 2025-12-03 05:45:54,585 [wrapper] ==== pilot stdout END ====
[2025-12-03 06:45:54] 2025-12-03 05:45:54,587 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 06:45:54] 2025-12-03 05:45:54,587 [wrapper] pilotpid: 23783
[2025-12-03 06:45:54] 2025-12-03 05:45:54,588 [wrapper] Pilot exit status: 0
[2025-12-03 06:45:54] 2025-12-03 05:45:54,593 [wrapper] pandaids: 6901294273
[2025-12-03 06:45:54] 2025-12-03 05:45:54,616 [wrapper] cleanup supervisor_pilot 18141 23784
[2025-12-03 06:45:54] 2025-12-03 05:45:54,618 [wrapper] Test setup, not cleaning
[2025-12-03 06:45:54] 2025-12-03 05:45:54,619 [wrapper] apfmon messages muted
[2025-12-03 06:45:54] 2025-12-03 05:45:54,620 [wrapper] ==== wrapper stdout END ====
[2025-12-03 06:45:54] 2025-12-03 05:45:54,620 [wrapper] ==== wrapper stderr END ====
[2025-12-03 06:45:54]  *** Error codes and diagnostics ***
[2025-12-03 06:45:54]     "exeErrorCode": 0,
[2025-12-03 06:45:54]     "exeErrorDiag": "",
[2025-12-03 06:45:54]     "pilotErrorCode": 0,
[2025-12-03 06:45:54]     "pilotErrorDiag": "",
[2025-12-03 06:45:54]  *** Listing of results directory ***
[2025-12-03 06:45:54] total 1051428
[2025-12-03 06:45:54] -rw------- 1 mf493845 unix-user    576529 Nov 29 10:19 pilot3.tar.gz
[2025-12-03 06:45:54] -rwx------ 1 mf493845 unix-user     36292 Nov 29 10:22 runpilot2-wrapper.sh
[2025-12-03 06:45:54] -rw------- 1 mf493845 unix-user      5112 Nov 29 10:26 queuedata.json
[2025-12-03 06:45:54] -rw------- 1 mf493845 unix-user       100 Dec  3 01:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 06:45:54] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  3 01:31 run_atlas
[2025-12-03 06:45:54] -rw------- 1 mf493845 unix-user       105 Dec  3 01:31 job.xml
[2025-12-03 06:45:54] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 03:07 start_atlas.sh
[2025-12-03 06:45:54] drwxrwx--x 2 mf493845 unix-user       100 Dec  3 03:07 shared
[2025-12-03 06:45:54] -rw-r--r-- 2 mf493845 unix-user    590122 Dec  3 03:07 input.tar.gz
[2025-12-03 06:45:54] -rw------- 1 mf493845 unix-user      6390 Dec  3 03:07 init_data.xml
[2025-12-03 06:45:54] -rw-r--r-- 2 mf493845 unix-user 377641934 Dec  3 03:07 EVNT.47531104._000101.pool.root.1
[2025-12-03 06:45:54] -rw------- 1 mf493845 unix-user         0 Dec  3 03:07 boinc_setup_complete
[2025-12-03 06:45:54] -rw------- 1 mf493845 unix-user      8192 Dec  3 03:07 boinc_mmap_file
[2025-12-03 06:45:54] -rw------- 1 mf493845 unix-user         0 Dec  3 03:07 boinc_lockfile
[2025-12-03 06:45:54] -rw------- 1 mf493845 unix-user      2879 Dec  3 03:07 pandaJob.out
[2025-12-03 06:45:54] -rw------- 1 mf493845 unix-user    989300 Dec  3 03:07 agis_schedconf.cvmfs.json
[2025-12-03 06:45:54] drwx------ 5 mf493845 unix-user       440 Dec  3 03:07 pilot3
[2025-12-03 06:45:54] -rw------- 1 mf493845 unix-user 688097444 Dec  3 06:45 HITS.47531111._000996.pool.root.1
[2025-12-03 06:45:54] -rw------- 1 mf493845 unix-user      1021 Dec  3 06:45 memory_monitor_summary.json
[2025-12-03 06:45:54] -rw------- 1 mf493845 unix-user   1516240 Dec  3 06:45 agis_ddmendpoints.agis.ALL.json
[2025-12-03 06:45:54] -rw------- 1 mf493845 unix-user   1613823 Dec  3 06:45 log.47531111._000996.job.log.tgz.1
[2025-12-03 06:45:54] -rw------- 1 mf493845 unix-user     27784 Dec  3 06:45 heartbeat.json
[2025-12-03 06:45:54] -rw------- 1 mf493845 unix-user       820 Dec  3 06:45 pilotlog.txt
[2025-12-03 06:45:54] -rw------- 1 mf493845 unix-user        95 Dec  3 06:45 pilot_heartbeat.json
[2025-12-03 06:45:54] -rw------- 1 mf493845 unix-user   1891338 Dec  3 06:45 log.47531111._000996.job.log.1
[2025-12-03 06:45:54] -rw------- 1 mf493845 unix-user       353 Dec  3 06:45 output.list
[2025-12-03 06:45:54] -rw------- 1 mf493845 unix-user       620 Dec  3 06:45 runtime_log
[2025-12-03 06:45:54] -rw------- 1 mf493845 unix-user   3543040 Dec  3 06:45 result.tar.gz
[2025-12-03 06:45:54] -rw------- 1 mf493845 unix-user      9221 Dec  3 06:45 runtime_log.err
[2025-12-03 06:45:54] -rw------- 1 mf493845 unix-user       650 Dec  3 06:45 pLvNDmTLWj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmwDPKDm5WHoon.diag
[2025-12-03 06:45:54] -rw------- 1 mf493845 unix-user     21736 Dec  3 06:45 stderr.txt
[2025-12-03 06:45:54] HITS file was successfully produced:
[2025-12-03 06:45:54] -rw------- 1 mf493845 unix-user 688097444 Dec  3 06:45 shared/HITS.pool.root.1
[2025-12-03 06:45:54]  *** Contents of shared directory: ***
[2025-12-03 06:45:54] total 1044820
[2025-12-03 06:45:54] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 03:07 start_atlas.sh
[2025-12-03 06:45:54] -rw-r--r-- 2 mf493845 unix-user    590122 Dec  3 03:07 input.tar.gz
[2025-12-03 06:45:54] -rw-r--r-- 2 mf493845 unix-user 377641934 Dec  3 03:07 ATLAS.root_0
[2025-12-03 06:45:54] -rw------- 1 mf493845 unix-user 688097444 Dec  3 06:45 HITS.pool.root.1
[2025-12-03 06:45:54] -rw------- 1 mf493845 unix-user   3543040 Dec  3 06:45 result.tar.gz
06:45:56 (20050): run_atlas exited; CPU time 99350.978009
06:45:56 (20050): called boinc_finish(0)

</stderr_txt>
]]>

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