Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:27:43 (3381173): wrapper (7.7.26015): starting
18:27:43 (3381173): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 18:27:43] Arguments: --nthreads 8
[2025-12-02 18:27:43] Threads: 8
[2025-12-02 18:27:43] Checking for CVMFS
[2025-12-02 18:27:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 18:27:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 18:27:44] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 18:27:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 18:27:45] 2.13.3.0 9438 39327 297372 153574 0 232 32273933 40960000 63043 16776704 0 584439523 99.779 334679244 45365 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-02 18:27:45] CVMFS is ok
[2025-12-02 18:27:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 18:27:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 18:27:45] Further information can be found at the LHC@home message board.
[2025-12-02 18:27:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 18:27:45] Checking for apptainer binary...
[2025-12-02 18:27:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 18:27:45] Running /usr/bin/apptainer --version
[2025-12-02 18:27:45] apptainer version 1.4.4-1.el9
[2025-12-02 18:27:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 18:27:46] c8-7-3.aglt2.org
[2025-12-02 18:27:46] apptainer works
[2025-12-02 18:27:46] Set ATHENA_PROC_NUMBER=8
[2025-12-02 18:27:46] Set ATHENA_CORE_NUMBER=8
[2025-12-02 18:27:46] Starting ATLAS job with PandaID=6895323629
[2025-12-02 18:27:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 05:09:41]  *** The last 200 lines of the pilot log: ***
[2025-12-03 05:09:41] 2025-12-03 10:08:39,317 | INFO     | monitor loop #2002: job 0:6895323629 is in state 'finished'
[2025-12-03 05:09:41] 2025-12-03 10:08:39,317 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 05:09:41] 2025-12-03 10:08:41,287 | INFO     | time since job start (38358s) is within the limit (172800.0s)
[2025-12-03 05:09:41] 2025-12-03 10:08:41,823 | INFO     | monitor loop #2003: job 0:6895323629 is in state 'finished'
[2025-12-03 05:09:41] 2025-12-03 10:08:41,825 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 05:09:41] 2025-12-03 10:08:43,294 | INFO     | time since job start (38360s) is within the limit (172800.0s)
[2025-12-03 05:09:41] 2025-12-03 10:08:44,352 | INFO     | monitor loop #2004: job 0:6895323629 is in state 'finished'
[2025-12-03 05:09:41] 2025-12-03 10:08:44,352 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 05:09:41] 2025-12-03 10:08:45,316 | INFO     | time since job start (38362s) is within the limit (172800.0s)
[2025-12-03 05:09:41] 2025-12-03 10:08:46,860 | INFO     | monitor loop #2005: job 0:6895323629 is in state 'finished'
[2025-12-03 05:09:41] 2025-12-03 10:08:46,860 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 05:09:41] 2025-12-03 10:08:47,325 | INFO     | time since job start (38364s) is within the limit (172800.0s)
[2025-12-03 05:09:41] 2025-12-03 10:08:49,332 | INFO     | time since job start (38366s) is within the limit (172800.0s)
[2025-12-03 05:09:41] 2025-12-03 10:08:49,378 | INFO     | monitor loop #2006: job 0:6895323629 is in state 'finished'
[2025-12-03 05:09:41] 2025-12-03 10:08:49,378 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 05:09:41] 2025-12-03 10:08:50,607 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-03 05:09:41] 2025-12-03 10:08:50,616 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3800.1323359375
[2025-12-03 05:09:41] 2025-12-03 10:08:50,654 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6895323629/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 05:09:41] 2025-12-03 10:08:50,654 | INFO     | extracted standard info from prmon json
[2025-12-03 05:09:41] 2025-12-03 10:08:50,654 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 05:09:41] 2025-12-03 10:08:50,655 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 05:09:41] 2025-12-03 10:08:50,664 | INFO     | fitting pss+swap vs Time
[2025-12-03 05:09:41] 2025-12-03 10:08:50,726 | INFO     | sum of square deviations: 76066366010.3642
[2025-12-03 05:09:41] 2025-12-03 10:08:50,755 | INFO     | sum of deviations: 475363596360.71216
[2025-12-03 05:09:41] 2025-12-03 10:08:50,756 | INFO     | mean x: 1764737416.9488819
[2025-12-03 05:09:41] 2025-12-03 10:08:50,756 | INFO     | mean y: 2768271.803514377
[2025-12-03 05:09:41] 2025-12-03 10:08:50,756 | INFO     | intersect: -11025652949.7234
[2025-12-03 05:09:41] 2025-12-03 10:08:50,756 | INFO     | chi2: 30.82878116009917
[2025-12-03 05:09:41] 2025-12-03 10:08:50,757 | INFO     | sum of square deviations: 74258450592.28336
[2025-12-03 05:09:41] 2025-12-03 10:08:50,771 | INFO     | sum of deviations: 676609678140.8441
[2025-12-03 05:09:41] 2025-12-03 10:08:50,771 | INFO     | mean x: 1764737264.4605474
[2025-12-03 05:09:41] 2025-12-03 10:08:50,771 | INFO     | mean y: 2785240.7487922707
[2025-12-03 05:09:41] 2025-12-03 10:08:50,771 | INFO     | intersect: -16076708782.97764
[2025-12-03 05:09:41] 2025-12-03 10:08:50,780 | INFO     | chi2: 27.324401925128356
[2025-12-03 05:09:41] 2025-12-03 10:08:50,780 | INFO     | current chi2=27.324401925128356 (change=11.367232511632452 %)
[2025-12-03 05:09:41] 2025-12-03 10:08:50,780 | INFO     | right removable region: 620
[2025-12-03 05:09:41] 2025-12-03 10:08:50,780 | INFO     | sum of square deviations: 74257897322.28336
[2025-12-03 05:09:41] 2025-12-03 10:08:50,793 | INFO     | sum of deviations: 224236024930.14563
[2025-12-03 05:09:41] 2025-12-03 10:08:50,793 | INFO     | mean x: 1764737569.4605474
[2025-12-03 05:09:41] 2025-12-03 10:08:50,793 | INFO     | mean y: 2789445.9855072466
[2025-12-03 05:09:41] 2025-12-03 10:08:50,794 | INFO     | intersect: -5326175578.478937
[2025-12-03 05:09:41] 2025-12-03 10:08:50,794 | INFO     | chi2: 26.158817679974003
[2025-12-03 05:09:41] 2025-12-03 10:08:50,794 | INFO     | current chi2=26.158817679974003 (change=15.148063933741787 %)
[2025-12-03 05:09:41] 2025-12-03 10:08:50,794 | INFO     | left removable region: 10
[2025-12-03 05:09:41] 2025-12-03 10:08:50,794 | INFO     | sum of square deviations: 70381275287.89503
[2025-12-03 05:09:41] 2025-12-03 10:08:50,803 | INFO     | sum of deviations: 253539616463.5248
[2025-12-03 05:09:41] 2025-12-03 10:08:50,803 | INFO     | mean x: 1764737538.9868853
[2025-12-03 05:09:41] 2025-12-03 10:08:50,803 | INFO     | mean y: 2829474.5655737706
[2025-12-03 05:09:41] 2025-12-03 10:08:50,803 | INFO     | intersect: -6354413655.276856
[2025-12-03 05:09:41] 2025-12-03 10:08:50,803 | INFO     | chi2: 18.40665100499896
[2025-12-03 05:09:41] 2025-12-03 10:08:50,804 | INFO     | current memory leak: 3.60 B/s (using 610 data points, chi2=18.41)
[2025-12-03 05:09:41] 2025-12-03 10:08:50,812 | INFO     | could have reported an average CPU frequency of 3795 MHz (24 samples)
[2025-12-03 05:09:41] 2025-12-03 10:08:50,812 | INFO     | ..............................
[2025-12-03 05:09:41] 2025-12-03 10:08:50,812 | INFO     | . Timing measurements:
[2025-12-03 05:09:41] 2025-12-03 10:08:50,813 | INFO     | . get job = 0 s
[2025-12-03 05:09:41] 2025-12-03 10:08:50,813 | INFO     | . initial setup = 9 s
[2025-12-03 05:09:41] 2025-12-03 10:08:50,813 | INFO     | . payload setup = 65 s
[2025-12-03 05:09:41] 2025-12-03 10:08:50,813 | INFO     | . stage-in = 0 s
[2025-12-03 05:09:41] 2025-12-03 10:08:50,813 | INFO     | . payload execution = 38174 s
[2025-12-03 05:09:41] 2025-12-03 10:08:50,813 | INFO     | . stage-out = 6 s
[2025-12-03 05:09:41] 2025-12-03 10:08:50,813 | INFO     | . log creation = 2 s
[2025-12-03 05:09:41] 2025-12-03 10:08:50,813 | INFO     | ..............................
[2025-12-03 05:09:41] 2025-12-03 10:08:50,976 | INFO     | 
[2025-12-03 05:09:41] 2025-12-03 10:08:50,976 | INFO     | job summary report
[2025-12-03 05:09:41] 2025-12-03 10:08:50,976 | INFO     | --------------------------------------------------
[2025-12-03 05:09:41] 2025-12-03 10:08:50,976 | INFO     | PanDA job id: 6895323629
[2025-12-03 05:09:41] 2025-12-03 10:08:50,976 | INFO     | task id: 47556137
[2025-12-03 05:09:41] 2025-12-03 10:08:50,976 | INFO     | errors: (none)
[2025-12-03 05:09:41] 2025-12-03 10:08:50,976 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 05:09:41] 2025-12-03 10:08:50,976 | INFO     | pilot state: finished 
[2025-12-03 05:09:41] 2025-12-03 10:08:50,976 | INFO     | transexitcode: 0
[2025-12-03 05:09:41] 2025-12-03 10:08:50,976 | INFO     | exeerrorcode: 0
[2025-12-03 05:09:41] 2025-12-03 10:08:50,976 | INFO     | exeerrordiag: 
[2025-12-03 05:09:41] 2025-12-03 10:08:50,977 | INFO     | exitcode: 0
[2025-12-03 05:09:41] 2025-12-03 10:08:50,977 | INFO     | exitmsg: OK
[2025-12-03 05:09:41] 2025-12-03 10:08:50,977 | INFO     | cpuconsumptiontime: 135641 s
[2025-12-03 05:09:41] 2025-12-03 10:08:50,977 | INFO     | nevents: 1000
[2025-12-03 05:09:41] 2025-12-03 10:08:50,977 | INFO     | neventsw: 0
[2025-12-03 05:09:41] 2025-12-03 10:08:50,977 | INFO     | pid: 3449915
[2025-12-03 05:09:41] 2025-12-03 10:08:50,977 | INFO     | pgrp: 3449915
[2025-12-03 05:09:41] 2025-12-03 10:08:50,977 | INFO     | corecount: 8
[2025-12-03 05:09:41] 2025-12-03 10:08:50,977 | INFO     | event service: False
[2025-12-03 05:09:41] 2025-12-03 10:08:50,977 | INFO     | sizes: {0: 2284025, 1: 2284280, 12: 2284280, 23: 2284308, 34: 2284336, 44: 2284626, 45: 2284782, 38244: 2326573, 38251: 2335567, 38252: 2335623, 38285: 2335869}
[2025-12-03 05:09:41] 2025-12-03 10:08:50,977 | INFO     | --------------------------------------------------
[2025-12-03 05:09:41] 2025-12-03 10:08:50,977 | INFO     | 
[2025-12-03 05:09:41] 2025-12-03 10:08:50,977 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-12-03 05:09:41] 2025-12-03 10:08:51,024 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 05:09:41] 2025-12-03 10:08:51,024 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 05:09:41] 2025-12-03 10:08:51,024 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 05:09:41] 2025-12-03 10:08:51,024 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 05:09:41] 2025-12-03 10:08:51,024 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 05:09:41] 2025-12-03 10:08:51,024 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 05:09:41] 2025-12-03 10:08:51,024 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 05:09:41] 2025-12-03 10:08:51,024 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 05:09:41] 2025-12-03 10:08:51,025 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 05:09:41] 2025-12-03 10:08:51,025 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 05:09:41] 2025-12-03 10:08:51,025 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 05:09:41] 2025-12-03 10:08:51,025 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 05:09:41] 2025-12-03 10:08:51,025 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 05:09:41] 2025-12-03 10:08:51,025 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 05:09:41] 2025-12-03 10:08:51,025 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 05:09:41] 2025-12-03 10:08:51,025 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 05:09:41] 2025-12-03 10:08:51,025 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 05:09:41] 2025-12-03 10:08:51,025 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 05:09:41] 2025-12-03 10:08:51,025 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 05:09:41] 2025-12-03 10:08:51,025 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 05:09:41] 2025-12-03 10:08:51,025 | INFO     | job 6895323629 has completed (purged errors)
[2025-12-03 05:09:41] 2025-12-03 10:08:51,025 | INFO     | overall cleanup function is called
[2025-12-03 05:09:41] 2025-12-03 10:08:52,047 | INFO     | --- collectZombieJob: --- 10, [3449915]
[2025-12-03 05:09:41] 2025-12-03 10:08:52,047 | INFO     | zombie collector waiting for pid 3449915
[2025-12-03 05:09:41] 2025-12-03 10:08:52,047 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 05:09:41] 2025-12-03 10:08:52,047 | INFO     | collected zombie processes
[2025-12-03 05:09:41] 2025-12-03 10:08:52,047 | INFO     | will attempt to kill all subprocesses of pid=3449915
[2025-12-03 05:09:41] 2025-12-03 10:08:53,082 | INFO     | process IDs to be killed: [3449915] (in reverse order)
[2025-12-03 05:09:41] 2025-12-03 10:08:53,401 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 05:09:41] 2025-12-03 10:08:53,401 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 05:09:41] 2025-12-03 10:08:53,451 | INFO     | did not find any defunct processes belonging to 3449915
[2025-12-03 05:09:41] 2025-12-03 10:08:53,509 | INFO     | did not find any defunct processes belonging to 3449915
[2025-12-03 05:09:41] 2025-12-03 10:08:53,510 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 05:09:41] 2025-12-03 10:08:53,511 | INFO     | ready for new job
[2025-12-03 05:09:41] 2025-12-03 10:08:53,511 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 05:09:41] 2025-12-03 10:08:53,517 | INFO     | ***************************************
[2025-12-03 05:09:41] 2025-12-03 10:08:53,517 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 05:09:41] 2025-12-03 10:08:53,517 | INFO     | ***************************************
[2025-12-03 05:09:41] 2025-12-03 10:08:53,517 | INFO     | 
[2025-12-03 05:09:41] 2025-12-03 10:08:53,526 | INFO     | architecture information:
[2025-12-03 05:09:41] 2025-12-03 10:08:53,543 | INFO     | executing command: cat /etc/os-release
[2025-12-03 05:09:41] 2025-12-03 10:08:53,602 | INFO     | cat /etc/os-release:
[2025-12-03 05:09:41] NAME="CentOS Linux"
[2025-12-03 05:09:41] VERSION="7 (Core)"
[2025-12-03 05:09:41] ID="centos"
[2025-12-03 05:09:41] ID_LIKE="rhel fedora"
[2025-12-03 05:09:41] VERSION_ID="7"
[2025-12-03 05:09:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 05:09:41] ANSI_COLOR="0;31"
[2025-12-03 05:09:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 05:09:41] HOME_URL="https://www.centos.org/"
[2025-12-03 05:09:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 05:09:41] 
[2025-12-03 05:09:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 05:09:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 05:09:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 05:09:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 05:09:41] 
[2025-12-03 05:09:41] 2025-12-03 10:08:53,604 | INFO     | ***************************************
[2025-12-03 05:09:41] 2025-12-03 10:08:54,109 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-12-03 05:09:41] 2025-12-03 10:08:54,179 | INFO     | sufficient remaining disk space (166427885568 B)
[2025-12-03 05:09:41] 2025-12-03 10:08:54,179 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 05:09:41] 2025-12-03 10:08:54,179 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 05:09:41] 2025-12-03 10:08:54,179 | INFO     | update_server=False
[2025-12-03 05:09:41] 2025-12-03 10:08:54,179 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 05:09:41] 2025-12-03 10:08:54,406 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-03 05:09:41] 2025-12-03 10:08:54,406 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-03 05:09:41] 2025-12-03 10:08:54,406 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 05:09:41] 2025-12-03 10:08:54,406 | INFO     | will abort loop
[2025-12-03 05:09:41] 2025-12-03 10:08:54,440 | INFO     | all data control threads have been joined
[2025-12-03 05:09:41] 2025-12-03 10:08:54,619 | INFO     | all job control threads have been joined
[2025-12-03 05:09:41] 2025-12-03 10:08:55,185 | INFO     | [job] retrieve thread has finished
[2025-12-03 05:09:41] 2025-12-03 10:08:55,272 | INFO     | all payload control threads have been joined
[2025-12-03 05:09:41] 2025-12-03 10:08:55,412 | INFO     | [job] job monitor thread has finished
[2025-12-03 05:09:41] 2025-12-03 10:08:55,429 | INFO     | [job] validate thread has finished
[2025-12-03 05:09:41] 2025-12-03 10:08:55,446 | INFO     | [data] control thread has finished
[2025-12-03 05:09:41] 2025-12-03 10:08:55,531 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 05:09:41] 2025-12-03 10:08:55,602 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 05:09:41] 2025-12-03 10:08:55,625 | INFO     | [job] control thread has finished
[2025-12-03 05:09:41] 2025-12-03 10:08:55,771 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 05:09:41] 2025-12-03 10:08:56,027 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 05:09:41] 2025-12-03 10:08:56,054 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 05:09:41] 2025-12-03 10:08:56,193 | INFO     | [payload] validate_post thread has finished
[2025-12-03 05:09:41] 2025-12-03 10:08:56,221 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 05:09:41] 2025-12-03 10:08:56,278 | INFO     | [payload] control thread has finished
[2025-12-03 05:09:41] 2025-12-03 10:08:56,539 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 05:09:41] 2025-12-03 10:08:56,567 | INFO     | [data] copytool_in thread has finished
[2025-12-03 05:09:41] 2025-12-03 10:08:56,699 | INFO     | [payload] failed_post thread has finished
[2025-12-03 05:09:41] 2025-12-03 10:08:57,033 | INFO     | [job] queue monitor thread has finished
[2025-12-03 05:09:41] 2025-12-03 10:08:57,612 | INFO     | [data] copytool_out thread has finished
[2025-12-03 05:09:41] 2025-12-03 10:08:59,783 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 05:09:41] 2025-12-03 10:09:23,935 | INFO     | PID=3406706 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-03 05:09:41] 2025-12-03 10:09:23,935 | INFO     | .. there are 36 such processes running
[2025-12-03 05:09:41] 2025-12-03 10:09:23,939 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 05:09:41] 2025-12-03 10:09:23,939 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 05:09:41] 2025-12-03 10:09:23,939 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 05:09:41] 2025-12-03 10:09:33,581 | INFO     | [monitor] cgroup control has ended
[2025-12-03 05:09:41] 2025-12-03 10:09:34,208 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140509806757696)>', '<ExcThread(monitor, started 140509175604992)>']
[2025-12-03 05:09:41] 2025-12-03 10:09:35,043 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 05:09:41] 2025-12-03 10:09:35,043 | INFO     | [monitor] control thread has ended
[2025-12-03 05:09:41] 2025-12-03 10:09:39,234 | INFO     | all workflow threads have been joined
[2025-12-03 05:09:41] 2025-12-03 10:09:39,236 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 05:09:41] 2025-12-03 10:09:39,236 | INFO     | traces error code: 0
[2025-12-03 05:09:41] 2025-12-03 10:09:39,236 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 05:09:41] 2025-12-03 10:09:39,826 [wrapper] ==== pilot stdout END ====
[2025-12-03 05:09:41] 2025-12-03 10:09:39,833 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 05:09:41] 2025-12-03 10:09:39,856 [wrapper] pilotpid: 3406706
[2025-12-03 05:09:41] 2025-12-03 10:09:39,870 [wrapper] Pilot exit status: 0
[2025-12-03 05:09:41] 2025-12-03 10:09:39,979 [wrapper] pandaids: 6895323629
[2025-12-03 05:09:41] 2025-12-03 10:09:40,363 [wrapper] cleanup supervisor_pilot 4118532 3406707
[2025-12-03 05:09:41] 2025-12-03 10:09:40,390 [wrapper] Test setup, not cleaning
[2025-12-03 05:09:41] 2025-12-03 10:09:40,401 [wrapper] apfmon messages muted
[2025-12-03 05:09:41] 2025-12-03 10:09:40,418 [wrapper] ==== wrapper stdout END ====
[2025-12-03 05:09:41] 2025-12-03 10:09:40,433 [wrapper] ==== wrapper stderr END ====
[2025-12-03 05:09:41]  *** Error codes and diagnostics ***
[2025-12-03 05:09:41]     "exeErrorCode": 0,
[2025-12-03 05:09:41]     "exeErrorDiag": "",
[2025-12-03 05:09:41]     "pilotErrorCode": 0,
[2025-12-03 05:09:41]     "pilotErrorDiag": "",
[2025-12-03 05:09:41]  *** Listing of results directory ***
[2025-12-03 05:09:41] total 1310600
[2025-12-03 05:09:41] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 07:50 pilot3.tar.gz
[2025-12-03 05:09:41] -rwx------. 1 boincer umatlas     36292 Nov 21 08:06 runpilot2-wrapper.sh
[2025-12-03 05:09:41] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 08:06 queuedata.json
[2025-12-03 05:09:41] -rw-r--r--. 1 boincer umatlas       100 Dec  2 18:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 05:09:41] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  2 18:27 run_atlas
[2025-12-03 05:09:41] -rw-r--r--. 1 boincer umatlas       105 Dec  2 18:27 job.xml
[2025-12-03 05:09:41] -rw-r--r--. 2 boincer umatlas 409523233 Dec  2 18:27 EVNT.47483658._000001.pool.root.1
[2025-12-03 05:09:41] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 18:27 start_atlas.sh
[2025-12-03 05:09:41] drwxrwx--x. 2 boincer umatlas      4096 Dec  2 18:27 shared
[2025-12-03 05:09:41] -rw-r--r--. 2 boincer umatlas    590092 Dec  2 18:27 input.tar.gz
[2025-12-03 05:09:41] -rw-r--r--. 1 boincer umatlas         0 Dec  2 18:27 boinc_lockfile
[2025-12-03 05:09:41] -rw-r--r--. 1 boincer umatlas      2779 Dec  2 18:27 pandaJob.out
[2025-12-03 05:09:41] -rw-------. 1 boincer umatlas        57 Dec  2 18:27 setup.sh.local
[2025-12-03 05:09:41] -rw-------. 1 boincer umatlas    989284 Dec  2 18:29 agis_schedconf.cvmfs.json
[2025-12-03 05:09:41] drwx------. 5 boincer umatlas      4096 Dec  2 18:29 pilot3
[2025-12-03 05:09:41] -rw-r--r--. 1 boincer umatlas       533 Dec  3 04:43 boinc_task_state.xml
[2025-12-03 05:09:41] -rw-r--r--. 1 boincer umatlas      7174 Dec  3 05:02 init_data.xml
[2025-12-03 05:09:41] -rw-------. 1 boincer umatlas 916061959 Dec  3 05:07 HITS.47556137._000002.pool.root.1
[2025-12-03 05:09:41] -rw-------. 1 boincer umatlas      1064 Dec  3 05:08 memory_monitor_summary.json
[2025-12-03 05:09:41] -rw-------. 1 boincer umatlas   1516240 Dec  3 05:08 agis_ddmendpoints.agis.ALL.json
[2025-12-03 05:09:41] -rw-------. 1 boincer umatlas   1820253 Dec  3 05:08 log.47556137._000002.job.log.tgz.1
[2025-12-03 05:09:41] -rw-------. 1 boincer umatlas      8610 Dec  3 05:08 heartbeat.json
[2025-12-03 05:09:41] -rw-------. 1 boincer umatlas        95 Dec  3 05:09 pilot_heartbeat.json
[2025-12-03 05:09:41] -rw-------. 1 boincer umatlas      5011 Dec  3 05:09 pilotlog.txt
[2025-12-03 05:09:41] -rw-------. 1 boincer umatlas   4453176 Dec  3 05:09 log.47556137._000002.job.log.1
[2025-12-03 05:09:41] -rw-------. 1 boincer umatlas       353 Dec  3 05:09 output.list
[2025-12-03 05:09:41] -rw-r--r--. 1 boincer umatlas       620 Dec  3 05:09 runtime_log
[2025-12-03 05:09:41] -rw-------. 1 boincer umatlas   6297600 Dec  3 05:09 result.tar.gz
[2025-12-03 05:09:41] -rw-r--r--. 1 boincer umatlas      8192 Dec  3 05:09 boinc_mmap_file
[2025-12-03 05:09:41] -rw-r--r--. 1 boincer umatlas      9333 Dec  3 05:09 runtime_log.err
[2025-12-03 05:09:41] -rw-------. 1 boincer umatlas       663 Dec  3 05:09 mfeMDma1fg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmqcHKDmGZfDfm.diag
[2025-12-03 05:09:41] -rw-r--r--. 1 boincer umatlas        29 Dec  3 05:09 wrapper_checkpoint.txt
[2025-12-03 05:09:41] -rw-r--r--. 1 boincer umatlas     21797 Dec  3 05:09 stderr.txt
[2025-12-03 05:09:41] HITS file was successfully produced:
[2025-12-03 05:09:41] -rw-------. 1 boincer umatlas 916061959 Dec  3 05:07 shared/HITS.pool.root.1
[2025-12-03 05:09:41]  *** Contents of shared directory: ***
[2025-12-03 05:09:41] total 1301272
[2025-12-03 05:09:41] -rw-r--r--. 2 boincer umatlas 409523233 Dec  2 18:27 ATLAS.root_0
[2025-12-03 05:09:41] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 18:27 start_atlas.sh
[2025-12-03 05:09:41] -rw-r--r--. 2 boincer umatlas    590092 Dec  2 18:27 input.tar.gz
[2025-12-03 05:09:41] -rw-------. 1 boincer umatlas 916061959 Dec  3 05:07 HITS.pool.root.1
[2025-12-03 05:09:41] -rw-------. 1 boincer umatlas   6297600 Dec  3 05:09 result.tar.gz
05:09:43 (3381173): run_atlas exited; CPU time 136476.032628
05:09:43 (3381173): called boinc_finish(0)

</stderr_txt>
]]>

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