Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
03:00:45 (10110): wrapper (7.7.26015): starting
03:00:45 (10110): wrapper: running run_atlas (--nthreads 8)
[2025-12-03 03:00:45] Arguments: --nthreads 8
[2025-12-03 03:00:45] Threads: 8
[2025-12-03 03:00:45] Checking for CVMFS
[2025-12-03 03:00:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 03:00:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 03:00:45] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 03:00:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 03:00:46] 2.11.0.0 4230 74786 88976 153576 2 248 3332343 4096001 4662 130560 1 7574876 99.549 5373618 506 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-03 03:00:46] CVMFS is ok
[2025-12-03 03:00:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-03 03:00:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-03 03:00:46] Further information can be found at the LHC@home message board.
[2025-12-03 03:00:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 03:00:46] Checking for apptainer binary...
[2025-12-03 03:00:46] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-03 03:00:46] apptainer is not installed, using version from CVMFS
[2025-12-03 03:00:46] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 03:00:46] WARNING: Environment variable TMPDIR already has value [/tmp/job_10946456/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node163
[2025-12-03 03:00:46] apptainer works
[2025-12-03 03:00:46] Set ATHENA_PROC_NUMBER=8
[2025-12-03 03:00:46] Set ATHENA_CORE_NUMBER=8
[2025-12-03 03:00:46] Starting ATLAS job with PandaID=6901330494
[2025-12-03 03:00:46] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10946456/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 06:40:36]  *** The last 200 lines of the pilot log: ***
[2025-12-03 06:40:36] 2025-12-03 05:40:01,309 | INFO     | executing command: lscpu
[2025-12-03 06:40:36] 2025-12-03 05:40:01,340 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-03 06:40:36] 2025-12-03 05:40:02,719 | INFO     | time since job start (13151s) is within the limit (172800.0s)
[2025-12-03 06:40:36] 2025-12-03 05:40:03,078 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 06:40:36] 2025-12-03 05:40:03,082 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2613.5239375
[2025-12-03 06:40:36] 2025-12-03 05:40:03,087 | INFO     | using path: /tmp/job_10946456/atlas/pilot/slots/0/PanDA_Pilot-6901330494/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 06:40:36] 2025-12-03 05:40:03,087 | INFO     | extracted standard info from prmon json
[2025-12-03 06:40:36] 2025-12-03 05:40:03,088 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 06:40:36] 2025-12-03 05:40:03,088 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 06:40:36] 2025-12-03 05:40:03,090 | INFO     | fitting pss+swap vs Time
[2025-12-03 06:40:36] 2025-12-03 05:40:03,090 | INFO     | sum of square deviations: 3124858590.0
[2025-12-03 06:40:36] 2025-12-03 05:40:03,091 | INFO     | sum of deviations: 103944701347.49998
[2025-12-03 06:40:36] 2025-12-03 05:40:03,091 | INFO     | mean x: 1764733827.5
[2025-12-03 06:40:36] 2025-12-03 05:40:03,091 | INFO     | mean y: 3429958.486111111
[2025-12-03 06:40:36] 2025-12-03 05:40:03,091 | INFO     | intersect: -58698340177.39643
[2025-12-03 06:40:36] 2025-12-03 05:40:03,091 | INFO     | chi2: 3.3691244469773967
[2025-12-03 06:40:36] 2025-12-03 05:40:03,091 | INFO     | sum of square deviations: 2912836010.0
[2025-12-03 06:40:36] 2025-12-03 05:40:03,092 | INFO     | sum of deviations: 142670831794.99997
[2025-12-03 06:40:36] 2025-12-03 05:40:03,092 | INFO     | mean x: 1764733675.0
[2025-12-03 06:40:36] 2025-12-03 05:40:03,092 | INFO     | mean y: 3457348.6872037915
[2025-12-03 06:40:36] 2025-12-03 05:40:03,092 | INFO     | intersect: -86433273193.13864
[2025-12-03 06:40:36] 2025-12-03 05:40:03,092 | INFO     | chi2: 1.713073042886416
[2025-12-03 06:40:36] 2025-12-03 05:40:03,092 | INFO     | current chi2=1.713073042886416 (change=49.15376176076558 %)
[2025-12-03 06:40:36] 2025-12-03 05:40:03,092 | INFO     | sum of square deviations: 2710627567.5
[2025-12-03 06:40:36] 2025-12-03 05:40:03,093 | INFO     | sum of deviations: 131682558517.5
[2025-12-03 06:40:36] 2025-12-03 05:40:03,093 | INFO     | mean x: 1764733522.5
[2025-12-03 06:40:36] 2025-12-03 05:40:03,093 | INFO     | mean y: 3449078.9368932038
[2025-12-03 06:40:36] 2025-12-03 05:40:03,093 | INFO     | intersect: -85727482064.33614
[2025-12-03 06:40:36] 2025-12-03 05:40:03,093 | INFO     | chi2: 1.7103020084034857
[2025-12-03 06:40:36] 2025-12-03 05:40:03,093 | INFO     | current chi2=1.7103020084034857 (change=0.1617581045033174 %)
[2025-12-03 06:40:36] 2025-12-03 05:40:03,093 | INFO     | right removable region: 205
[2025-12-03 06:40:36] 2025-12-03 05:40:03,093 | INFO     | sum of square deviations: 2912836010.0
[2025-12-03 06:40:36] 2025-12-03 05:40:03,094 | INFO     | sum of deviations: 50797349779.000015
[2025-12-03 06:40:36] 2025-12-03 05:40:03,094 | INFO     | mean x: 1764733980.0
[2025-12-03 06:40:36] 2025-12-03 05:40:03,094 | INFO     | mean y: 3467822.7156398105
[2025-12-03 06:40:36] 2025-12-03 05:40:03,094 | INFO     | intersect: -30771971969.017372
[2025-12-03 06:40:36] 2025-12-03 05:40:03,094 | INFO     | chi2: 1.718427418815009
[2025-12-03 06:40:36] 2025-12-03 05:40:03,094 | INFO     | current chi2=1.718427418815009 (change=48.994836912103594 %)
[2025-12-03 06:40:36] 2025-12-03 05:40:03,095 | INFO     | sum of square deviations: 2710627567.5
[2025-12-03 06:40:36] 2025-12-03 05:40:03,095 | INFO     | sum of deviations: 45986455123.5
[2025-12-03 06:40:36] 2025-12-03 05:40:03,095 | INFO     | mean x: 1764734132.5
[2025-12-03 06:40:36] 2025-12-03 05:40:03,095 | INFO     | mean y: 3471441.0922330096
[2025-12-03 06:40:36] 2025-12-03 05:40:03,095 | INFO     | intersect: -29935671789.848866
[2025-12-03 06:40:36] 2025-12-03 05:40:03,095 | INFO     | chi2: 1.719189880485332
[2025-12-03 06:40:36] 2025-12-03 05:40:03,096 | INFO     | current chi2=1.719189880485332 (change=-0.04436973374463431 %)
[2025-12-03 06:40:36] 2025-12-03 05:40:03,096 | INFO     | left removable region: 20
[2025-12-03 06:40:36] 2025-12-03 05:40:03,096 | INFO     | sum of square deviations: 1963274020.0
[2025-12-03 06:40:36] 2025-12-03 05:40:03,096 | INFO     | sum of deviations: 62227451150.0
[2025-12-03 06:40:36] 2025-12-03 05:40:03,096 | INFO     | mean x: 1764734102.0
[2025-12-03 06:40:36] 2025-12-03 05:40:03,096 | INFO     | mean y: 3503780.07027027
[2025-12-03 06:40:36] 2025-12-03 05:40:03,096 | INFO     | intersect: -55931074891.19648
[2025-12-03 06:40:36] 2025-12-03 05:40:03,097 | INFO     | chi2: 0.005657735401169583
[2025-12-03 06:40:36] 2025-12-03 05:40:03,097 | INFO     | current memory leak: 31.70 B/s (using 185 data points, chi2=0.01)
[2025-12-03 06:40:36] 2025-12-03 05:40:03,097 | INFO     | could have reported an average CPU frequency of 2925 MHz (11 samples)
[2025-12-03 06:40:36] 2025-12-03 05:40:03,097 | INFO     | ..............................
[2025-12-03 06:40:36] 2025-12-03 05:40:03,097 | INFO     | . Timing measurements:
[2025-12-03 06:40:36] 2025-12-03 05:40:03,097 | INFO     | . get job = 0 s
[2025-12-03 06:40:36] 2025-12-03 05:40:03,097 | INFO     | . initial setup = 1 s
[2025-12-03 06:40:36] 2025-12-03 05:40:03,097 | INFO     | . payload setup = 3 s
[2025-12-03 06:40:36] 2025-12-03 05:40:03,097 | INFO     | . stage-in = 0 s
[2025-12-03 06:40:36] 2025-12-03 05:40:03,097 | INFO     | . payload execution = 13123 s
[2025-12-03 06:40:36] 2025-12-03 05:40:03,097 | INFO     | . stage-out = 1 s
[2025-12-03 06:40:36] 2025-12-03 05:40:03,097 | INFO     | . log creation = 0 s
[2025-12-03 06:40:36] 2025-12-03 05:40:03,097 | INFO     | ..............................
[2025-12-03 06:40:36] 2025-12-03 05:40:03,147 | INFO     | 
[2025-12-03 06:40:36] 2025-12-03 05:40:03,147 | INFO     | job summary report
[2025-12-03 06:40:36] 2025-12-03 05:40:03,147 | INFO     | --------------------------------------------------
[2025-12-03 06:40:36] 2025-12-03 05:40:03,147 | INFO     | PanDA job id: 6901330494
[2025-12-03 06:40:36] 2025-12-03 05:40:03,147 | INFO     | task id: 47531111
[2025-12-03 06:40:36] 2025-12-03 05:40:03,147 | INFO     | errors: (none)
[2025-12-03 06:40:36] 2025-12-03 05:40:03,147 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 06:40:36] 2025-12-03 05:40:03,147 | INFO     | pilot state: finished 
[2025-12-03 06:40:36] 2025-12-03 05:40:03,147 | INFO     | transexitcode: 0
[2025-12-03 06:40:36] 2025-12-03 05:40:03,147 | INFO     | exeerrorcode: 0
[2025-12-03 06:40:36] 2025-12-03 05:40:03,147 | INFO     | exeerrordiag: 
[2025-12-03 06:40:36] 2025-12-03 05:40:03,147 | INFO     | exitcode: 0
[2025-12-03 06:40:36] 2025-12-03 05:40:03,147 | INFO     | exitmsg: OK
[2025-12-03 06:40:36] 2025-12-03 05:40:03,147 | INFO     | cpuconsumptiontime: 99351 s
[2025-12-03 06:40:36] 2025-12-03 05:40:03,147 | INFO     | nevents: 1000
[2025-12-03 06:40:36] 2025-12-03 05:40:03,147 | INFO     | neventsw: 0
[2025-12-03 06:40:36] 2025-12-03 05:40:03,147 | INFO     | pid: 24317
[2025-12-03 06:40:36] 2025-12-03 05:40:03,147 | INFO     | pgrp: 24317
[2025-12-03 06:40:36] 2025-12-03 05:40:03,148 | INFO     | corecount: 8
[2025-12-03 06:40:36] 2025-12-03 05:40:03,148 | INFO     | event service: False
[2025-12-03 06:40:36] 2025-12-03 05:40:03,148 | INFO     | sizes: {0: 2284580, 2: 2284842, 11: 2284870, 13130: 2335324, 13131: 2344348, 13134: 2344404, 13139: 2344778}
[2025-12-03 06:40:36] 2025-12-03 05:40:03,148 | INFO     | --------------------------------------------------
[2025-12-03 06:40:36] 2025-12-03 05:40:03,148 | INFO     | 
[2025-12-03 06:40:36] 2025-12-03 05:40:03,148 | INFO     | executing command: ls -lF /tmp/job_10946456/atlas/pilot/slots/0
[2025-12-03 06:40:36] 2025-12-03 05:40:03,155 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 06:40:36] 2025-12-03 05:40:03,155 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 06:40:36] 2025-12-03 05:40:03,155 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 06:40:36] 2025-12-03 05:40:03,156 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 06:40:36] 2025-12-03 05:40:03,156 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 06:40:36] 2025-12-03 05:40:03,156 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 06:40:36] 2025-12-03 05:40:03,156 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 06:40:36] 2025-12-03 05:40:03,156 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 06:40:36] 2025-12-03 05:40:03,156 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 06:40:36] 2025-12-03 05:40:03,156 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 06:40:36] 2025-12-03 05:40:03,156 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 06:40:36] 2025-12-03 05:40:03,156 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 06:40:36] 2025-12-03 05:40:03,156 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 06:40:36] 2025-12-03 05:40:03,156 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 06:40:36] 2025-12-03 05:40:03,156 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 06:40:36] 2025-12-03 05:40:03,156 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 06:40:36] 2025-12-03 05:40:03,156 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 06:40:36] 2025-12-03 05:40:03,156 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 06:40:36] 2025-12-03 05:40:03,156 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 06:40:36] 2025-12-03 05:40:03,156 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 06:40:36] 2025-12-03 05:40:03,156 | INFO     | job 6901330494 has completed (purged errors)
[2025-12-03 06:40:36] 2025-12-03 05:40:03,156 | INFO     | overall cleanup function is called
[2025-12-03 06:40:36] 2025-12-03 05:40:04,164 | INFO     | --- collectZombieJob: --- 10, [24317]
[2025-12-03 06:40:36] 2025-12-03 05:40:04,164 | INFO     | zombie collector waiting for pid 24317
[2025-12-03 06:40:36] 2025-12-03 05:40:04,164 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 06:40:36] 2025-12-03 05:40:04,164 | INFO     | collected zombie processes
[2025-12-03 06:40:36] 2025-12-03 05:40:04,164 | INFO     | will attempt to kill all subprocesses of pid=24317
[2025-12-03 06:40:36] 2025-12-03 05:40:04,264 | INFO     | process IDs to be killed: [24317] (in reverse order)
[2025-12-03 06:40:36] 2025-12-03 05:40:04,299 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 06:40:36] 2025-12-03 05:40:04,299 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 06:40:36] 2025-12-03 05:40:04,303 | INFO     | did not find any defunct processes belonging to 24317
[2025-12-03 06:40:36] 2025-12-03 05:40:04,306 | INFO     | did not find any defunct processes belonging to 24317
[2025-12-03 06:40:36] 2025-12-03 05:40:04,306 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 06:40:36] 2025-12-03 05:40:04,306 | INFO     | ready for new job
[2025-12-03 06:40:36] 2025-12-03 05:40:04,306 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 06:40:36] 2025-12-03 05:40:04,307 | INFO     | ***************************************
[2025-12-03 06:40:36] 2025-12-03 05:40:04,307 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 06:40:36] 2025-12-03 05:40:04,307 | INFO     | ***************************************
[2025-12-03 06:40:36] 2025-12-03 05:40:04,307 | INFO     | 
[2025-12-03 06:40:36] 2025-12-03 05:40:04,322 | INFO     | architecture information:
[2025-12-03 06:40:36] 2025-12-03 05:40:04,322 | INFO     | executing command: cat /etc/os-release
[2025-12-03 06:40:36] 2025-12-03 05:40:04,328 | INFO     | cat /etc/os-release:
[2025-12-03 06:40:36] NAME="CentOS Linux"
[2025-12-03 06:40:36] VERSION="7 (Core)"
[2025-12-03 06:40:36] ID="centos"
[2025-12-03 06:40:36] ID_LIKE="rhel fedora"
[2025-12-03 06:40:36] VERSION_ID="7"
[2025-12-03 06:40:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 06:40:36] ANSI_COLOR="0;31"
[2025-12-03 06:40:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 06:40:36] HOME_URL="https://www.centos.org/"
[2025-12-03 06:40:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 06:40:36] 
[2025-12-03 06:40:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 06:40:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 06:40:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 06:40:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 06:40:36] 
[2025-12-03 06:40:36] 2025-12-03 05:40:04,328 | INFO     | ***************************************
[2025-12-03 06:40:36] 2025-12-03 05:40:04,831 | INFO     | executing command: df -mP /tmp/job_10946456/atlas/pilot/slots/0
[2025-12-03 06:40:36] 2025-12-03 05:40:04,838 | INFO     | sufficient remaining disk space (223703203840 B)
[2025-12-03 06:40:36] 2025-12-03 05:40:04,838 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 06:40:36] 2025-12-03 05:40:04,838 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 06:40:36] 2025-12-03 05:40:04,838 | INFO     | update_server=False
[2025-12-03 06:40:36] 2025-12-03 05:40:04,838 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 06:40:36] 2025-12-03 05:40:04,838 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 06:40:36] 2025-12-03 05:40:04,838 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 06:40:36] 2025-12-03 05:40:04,838 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 06:40:36] 2025-12-03 05:40:04,838 | INFO     | aborting loop
[2025-12-03 06:40:36] 2025-12-03 05:40:05,023 | INFO     | all job control threads have been joined
[2025-12-03 06:40:36] 2025-12-03 05:40:05,205 | INFO     | all payload control threads have been joined
[2025-12-03 06:40:36] 2025-12-03 05:40:05,229 | INFO     | all data control threads have been joined
[2025-12-03 06:40:36] 2025-12-03 05:40:05,843 | INFO     | [job] retrieve thread has finished
[2025-12-03 06:40:36] 2025-12-03 05:40:05,843 | INFO     | [job] job monitor thread has finished
[2025-12-03 06:40:36] 2025-12-03 05:40:05,843 | INFO     | [job] queue monitor thread has finished
[2025-12-03 06:40:36] 2025-12-03 05:40:05,957 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 06:40:36] 2025-12-03 05:40:06,028 | INFO     | [job] control thread has finished
[2025-12-03 06:40:36] 2025-12-03 05:40:06,072 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 06:40:36] 2025-12-03 05:40:06,083 | INFO     | [job] validate thread has finished
[2025-12-03 06:40:36] 2025-12-03 05:40:06,091 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 06:40:36] 2025-12-03 05:40:06,106 | INFO     | [payload] failed_post thread has finished
[2025-12-03 06:40:36] 2025-12-03 05:40:06,118 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 06:40:36] 2025-12-03 05:40:06,210 | INFO     | [payload] control thread has finished
[2025-12-03 06:40:36] 2025-12-03 05:40:06,233 | INFO     | [data] control thread has finished
[2025-12-03 06:40:36] 2025-12-03 05:40:06,604 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 06:40:36] 2025-12-03 05:40:06,706 | INFO     | [payload] validate_post thread has finished
[2025-12-03 06:40:36] 2025-12-03 05:40:06,735 | INFO     | [data] copytool_in thread has finished
[2025-12-03 06:40:36] 2025-12-03 05:40:08,122 | INFO     | [data] copytool_out thread has finished
[2025-12-03 06:40:36] 2025-12-03 05:40:08,844 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 06:40:36] 2025-12-03 05:40:12,968 | INFO     | [monitor] cgroup control has ended
[2025-12-03 06:40:36] 2025-12-03 05:40:13,972 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456065021696)>']
[2025-12-03 06:40:36] 2025-12-03 05:40:18,997 | INFO     | all workflow threads have been joined
[2025-12-03 06:40:36] 2025-12-03 05:40:18,997 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 06:40:36] 2025-12-03 05:40:18,997 | INFO     | traces error code: 0
[2025-12-03 06:40:36] 2025-12-03 05:40:18,997 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 06:40:36] 2025-12-03 05:40:35,909 | INFO     | PID=15067 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-03 06:40:36] 2025-12-03 05:40:35,910 | INFO     | .. there are 3 such processes running
[2025-12-03 06:40:36] 2025-12-03 05:40:35,910 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 06:40:36] 2025-12-03 05:40:35,910 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 06:40:36] 2025-12-03 05:40:35,910 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 06:40:36] 2025-12-03 05:40:35,910 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 06:40:36] 2025-12-03 05:40:35,910 | INFO     | [monitor] control thread has ended
[2025-12-03 06:40:36] 2025-12-03 05:40:35,961 [wrapper] ==== pilot stdout END ====
[2025-12-03 06:40:36] 2025-12-03 05:40:35,962 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 06:40:36] 2025-12-03 05:40:35,964 [wrapper] pilotpid: 15067
[2025-12-03 06:40:36] 2025-12-03 05:40:35,965 [wrapper] Pilot exit status: 0
[2025-12-03 06:40:36] 2025-12-03 05:40:35,969 [wrapper] pandaids: 6901330494
[2025-12-03 06:40:36] 2025-12-03 05:40:35,992 [wrapper] cleanup supervisor_pilot 16388 15068
[2025-12-03 06:40:36] 2025-12-03 05:40:35,993 [wrapper] Test setup, not cleaning
[2025-12-03 06:40:36] 2025-12-03 05:40:35,994 [wrapper] apfmon messages muted
[2025-12-03 06:40:36] 2025-12-03 05:40:35,995 [wrapper] ==== wrapper stdout END ====
[2025-12-03 06:40:36] 2025-12-03 05:40:35,996 [wrapper] ==== wrapper stderr END ====
[2025-12-03 06:40:36]  *** Error codes and diagnostics ***
[2025-12-03 06:40:36]     "exeErrorCode": 0,
[2025-12-03 06:40:36]     "exeErrorDiag": "",
[2025-12-03 06:40:36]     "pilotErrorCode": 0,
[2025-12-03 06:40:36]     "pilotErrorDiag": "",
[2025-12-03 06:40:36]  *** Listing of results directory ***
[2025-12-03 06:40:36] total 1054464
[2025-12-03 06:40:36] -rw------- 1 mf493845 unix-user    576529 Nov 29 10:19 pilot3.tar.gz
[2025-12-03 06:40:36] -rwx------ 1 mf493845 unix-user     36292 Nov 29 10:22 runpilot2-wrapper.sh
[2025-12-03 06:40:36] -rw------- 1 mf493845 unix-user      5112 Nov 29 10:26 queuedata.json
[2025-12-03 06:40:36] -rw------- 1 mf493845 unix-user       100 Dec  3 01:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 06:40:36] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  3 01:25 run_atlas
[2025-12-03 06:40:36] -rw------- 1 mf493845 unix-user       105 Dec  3 01:25 job.xml
[2025-12-03 06:40:36] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 03:00 start_atlas.sh
[2025-12-03 06:40:36] drwxrwx--x 2 mf493845 unix-user       100 Dec  3 03:00 shared
[2025-12-03 06:40:36] -rw-r--r-- 2 mf493845 unix-user    590125 Dec  3 03:00 input.tar.gz
[2025-12-03 06:40:36] -rw------- 1 mf493845 unix-user      6392 Dec  3 03:00 init_data.xml
[2025-12-03 06:40:36] -rw-r--r-- 2 mf493845 unix-user 375669634 Dec  3 03:00 EVNT.47531104._000126.pool.root.1
[2025-12-03 06:40:36] -rw------- 1 mf493845 unix-user         0 Dec  3 03:00 boinc_setup_complete
[2025-12-03 06:40:36] -rw------- 1 mf493845 unix-user      8192 Dec  3 03:00 boinc_mmap_file
[2025-12-03 06:40:36] -rw------- 1 mf493845 unix-user         0 Dec  3 03:00 boinc_lockfile
[2025-12-03 06:40:36] -rw------- 1 mf493845 unix-user      2881 Dec  3 03:00 pandaJob.out
[2025-12-03 06:40:36] -rw------- 1 mf493845 unix-user    989300 Dec  3 03:00 agis_schedconf.cvmfs.json
[2025-12-03 06:40:36] drwx------ 5 mf493845 unix-user       440 Dec  3 03:00 pilot3
[2025-12-03 06:40:36] -rw------- 1 mf493845 unix-user 693134547 Dec  3 06:39 HITS.47531111._001243.pool.root.1
[2025-12-03 06:40:36] -rw------- 1 mf493845 unix-user      1030 Dec  3 06:39 memory_monitor_summary.json
[2025-12-03 06:40:36] -rw------- 1 mf493845 unix-user        95 Dec  3 06:39 pilot_heartbeat.json
[2025-12-03 06:40:36] -rw------- 1 mf493845 unix-user   1516240 Dec  3 06:39 agis_ddmendpoints.agis.ALL.json
[2025-12-03 06:40:36] -rw------- 1 mf493845 unix-user   1617622 Dec  3 06:39 log.47531111._001243.job.log.tgz.1
[2025-12-03 06:40:36] -rw------- 1 mf493845 unix-user     28061 Dec  3 06:40 heartbeat.json
[2025-12-03 06:40:36] -rw------- 1 mf493845 unix-user       820 Dec  3 06:40 pilotlog.txt
[2025-12-03 06:40:36] -rw------- 1 mf493845 unix-user   1905734 Dec  3 06:40 log.47531111._001243.job.log.1
[2025-12-03 06:40:36] -rw------- 1 mf493845 unix-user       353 Dec  3 06:40 output.list
[2025-12-03 06:40:36] -rw------- 1 mf493845 unix-user       620 Dec  3 06:40 runtime_log
[2025-12-03 06:40:36] -rw------- 1 mf493845 unix-user   3563520 Dec  3 06:40 result.tar.gz
[2025-12-03 06:40:36] -rw------- 1 mf493845 unix-user       650 Dec  3 06:40 uMwLDmaLWj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmxvLKDmeG8d6n.diag
[2025-12-03 06:40:36] -rw------- 1 mf493845 unix-user      9221 Dec  3 06:40 runtime_log.err
[2025-12-03 06:40:36] -rw------- 1 mf493845 unix-user     21753 Dec  3 06:40 stderr.txt
[2025-12-03 06:40:36] HITS file was successfully produced:
[2025-12-03 06:40:36] -rw------- 1 mf493845 unix-user 693134547 Dec  3 06:39 shared/HITS.pool.root.1
[2025-12-03 06:40:36]  *** Contents of shared directory: ***
[2025-12-03 06:40:36] total 1047836
[2025-12-03 06:40:36] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 03:00 start_atlas.sh
[2025-12-03 06:40:36] -rw-r--r-- 2 mf493845 unix-user    590125 Dec  3 03:00 input.tar.gz
[2025-12-03 06:40:36] -rw-r--r-- 2 mf493845 unix-user 375669634 Dec  3 03:00 ATLAS.root_0
[2025-12-03 06:40:36] -rw------- 1 mf493845 unix-user 693134547 Dec  3 06:39 HITS.pool.root.1
[2025-12-03 06:40:36] -rw------- 1 mf493845 unix-user   3563520 Dec  3 06:40 result.tar.gz
06:40:37 (10110): run_atlas exited; CPU time 99460.649120
06:40:37 (10110): called boinc_finish(0)

</stderr_txt>
]]>

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