Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
03:07:07 (31166): wrapper (7.7.26015): starting
03:07:07 (31166): wrapper: running run_atlas (--nthreads 8)
[2025-12-03 03:07:07] Arguments: --nthreads 8
[2025-12-03 03:07:07] Threads: 8
[2025-12-03 03:07:07] Checking for CVMFS
[2025-12-03 03:07:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 03:07:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 03:07:07] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 03:07:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 03:07:07] 2.11.0.0 5503 74954 95504 153576 1 112 3982183 4096001 4287 130560 1 6600754 99.530 7003757 672 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-03 03:07:07] CVMFS is ok
[2025-12-03 03:07:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-03 03:07:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-03 03:07:07] Further information can be found at the LHC@home message board.
[2025-12-03 03:07:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 03:07:07] Checking for apptainer binary...
[2025-12-03 03:07:07] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-03 03:07:07] apptainer is not installed, using version from CVMFS
[2025-12-03 03:07:07] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 03:07:08] WARNING: Environment variable TMPDIR already has value [/tmp/job_10946545/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node266
[2025-12-03 03:07:08] apptainer works
[2025-12-03 03:07:08] Set ATHENA_PROC_NUMBER=8
[2025-12-03 03:07:08] Set ATHENA_CORE_NUMBER=8
[2025-12-03 03:07:08] Starting ATLAS job with PandaID=6901294337
[2025-12-03 03:07:08] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10946545/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 07:05:43]  *** The last 200 lines of the pilot log: ***
[2025-12-03 07:05:43] 2025-12-03 06:04:47,491 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 07:05:43] 2025-12-03 06:04:47,982 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 07:05:43] 2025-12-03 06:04:47,990 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2462.8827265625
[2025-12-03 07:05:43] 2025-12-03 06:04:48,013 | INFO     | using path: /tmp/job_10946545/atlas/pilot/slots/0/PanDA_Pilot-6901294337/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 07:05:43] 2025-12-03 06:04:48,014 | INFO     | extracted standard info from prmon json
[2025-12-03 07:05:43] 2025-12-03 06:04:48,014 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 07:05:43] 2025-12-03 06:04:48,014 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 07:05:43] 2025-12-03 06:04:48,016 | INFO     | fitting pss+swap vs Time
[2025-12-03 07:05:43] 2025-12-03 06:04:48,016 | INFO     | sum of square deviations: 3972995422.5
[2025-12-03 07:05:43] 2025-12-03 06:04:48,017 | INFO     | sum of deviations: 116963723581.50002
[2025-12-03 07:05:43] 2025-12-03 06:04:48,017 | INFO     | mean x: 1764734760.5
[2025-12-03 07:05:43] 2025-12-03 06:04:48,017 | INFO     | mean y: 3367432.935897436
[2025-12-03 07:05:43] 2025-12-03 06:04:48,017 | INFO     | intersect: -51949863510.35664
[2025-12-03 07:05:43] 2025-12-03 06:04:48,017 | INFO     | chi2: 3.590654127875187
[2025-12-03 07:05:43] 2025-12-03 06:04:48,018 | INFO     | sum of square deviations: 3723716330.0
[2025-12-03 07:05:43] 2025-12-03 06:04:48,018 | INFO     | sum of deviations: 164082341998.99997
[2025-12-03 07:05:43] 2025-12-03 06:04:48,018 | INFO     | mean x: 1764734608.0
[2025-12-03 07:05:43] 2025-12-03 06:04:48,018 | INFO     | mean y: 3395903.0305676856
[2025-12-03 07:05:43] 2025-12-03 06:04:48,019 | INFO     | intersect: -77758109492.66298
[2025-12-03 07:05:43] 2025-12-03 06:04:48,019 | INFO     | chi2: 1.886415805260048
[2025-12-03 07:05:43] 2025-12-03 06:04:48,019 | INFO     | current chi2=1.886415805260048 (change=47.463171386647666 %)
[2025-12-03 07:05:43] 2025-12-03 06:04:48,019 | INFO     | sum of square deviations: 3485088600.0
[2025-12-03 07:05:43] 2025-12-03 06:04:48,020 | INFO     | sum of deviations: 157470835923.5
[2025-12-03 07:05:43] 2025-12-03 06:04:48,020 | INFO     | mean x: 1764734455.5
[2025-12-03 07:05:43] 2025-12-03 06:04:48,020 | INFO     | mean y: 3391678.0758928573
[2025-12-03 07:05:43] 2025-12-03 06:04:48,020 | INFO     | intersect: -79734670043.10605
[2025-12-03 07:05:43] 2025-12-03 06:04:48,020 | INFO     | chi2: 1.885284401142399
[2025-12-03 07:05:43] 2025-12-03 06:04:48,020 | INFO     | current chi2=1.885284401142399 (change=0.05997639091520047 %)
[2025-12-03 07:05:43] 2025-12-03 06:04:48,020 | INFO     | right removable region: 223
[2025-12-03 07:05:43] 2025-12-03 06:04:48,020 | INFO     | sum of square deviations: 3723716330.0
[2025-12-03 07:05:43] 2025-12-03 06:04:48,021 | INFO     | sum of deviations: 55130432136.00003
[2025-12-03 07:05:43] 2025-12-03 06:04:48,021 | INFO     | mean x: 1764734913.0
[2025-12-03 07:05:43] 2025-12-03 06:04:48,021 | INFO     | mean y: 3404972.2838427946
[2025-12-03 07:05:43] 2025-12-03 06:04:48,021 | INFO     | intersect: -26123880174.374043
[2025-12-03 07:05:43] 2025-12-03 06:04:48,021 | INFO     | chi2: 1.7777905319765193
[2025-12-03 07:05:43] 2025-12-03 06:04:48,021 | INFO     | current chi2=1.7777905319765193 (change=50.48839379501728 %)
[2025-12-03 07:05:43] 2025-12-03 06:04:48,021 | INFO     | sum of square deviations: 3485088600.0
[2025-12-03 07:05:43] 2025-12-03 06:04:48,022 | INFO     | sum of deviations: 44046165140.999985
[2025-12-03 07:05:43] 2025-12-03 06:04:48,022 | INFO     | mean x: 1764735065.5
[2025-12-03 07:05:43] 2025-12-03 06:04:48,022 | INFO     | mean y: 3412048.535714286
[2025-12-03 07:05:43] 2025-12-03 06:04:48,022 | INFO     | intersect: -22300127702.254677
[2025-12-03 07:05:43] 2025-12-03 06:04:48,022 | INFO     | chi2: 1.763947067766387
[2025-12-03 07:05:43] 2025-12-03 06:04:48,023 | INFO     | current chi2=1.763947067766387 (change=0.7786892753186855 %)
[2025-12-03 07:05:43] 2025-12-03 06:04:48,023 | INFO     | left removable region: 20
[2025-12-03 07:05:43] 2025-12-03 06:04:48,023 | INFO     | sum of square deviations: 2593916542.0
[2025-12-03 07:05:43] 2025-12-03 06:04:48,023 | INFO     | sum of deviations: 67199248768.99999
[2025-12-03 07:05:43] 2025-12-03 06:04:48,023 | INFO     | mean x: 1764735035.0
[2025-12-03 07:05:43] 2025-12-03 06:04:48,023 | INFO     | mean y: 3452352.5566502465
[2025-12-03 07:05:43] 2025-12-03 06:04:48,023 | INFO     | intersect: -45714621728.92431
[2025-12-03 07:05:43] 2025-12-03 06:04:48,024 | INFO     | chi2: 0.011311674812132688
[2025-12-03 07:05:43] 2025-12-03 06:04:48,024 | INFO     | current memory leak: 25.91 B/s (using 203 data points, chi2=0.01)
[2025-12-03 07:05:43] 2025-12-03 06:04:48,024 | INFO     | could have reported an average CPU frequency of 2531 MHz (11 samples)
[2025-12-03 07:05:43] 2025-12-03 06:04:48,024 | INFO     | ..............................
[2025-12-03 07:05:43] 2025-12-03 06:04:48,024 | INFO     | . Timing measurements:
[2025-12-03 07:05:43] 2025-12-03 06:04:48,024 | INFO     | . get job = 0 s
[2025-12-03 07:05:43] 2025-12-03 06:04:48,024 | INFO     | . initial setup = 1 s
[2025-12-03 07:05:43] 2025-12-03 06:04:48,024 | INFO     | . payload setup = 4 s
[2025-12-03 07:05:43] 2025-12-03 06:04:48,024 | INFO     | . stage-in = 0 s
[2025-12-03 07:05:43] 2025-12-03 06:04:48,024 | INFO     | . payload execution = 14227 s
[2025-12-03 07:05:43] 2025-12-03 06:04:48,024 | INFO     | . stage-out = 1 s
[2025-12-03 07:05:43] 2025-12-03 06:04:48,024 | INFO     | . log creation = 0 s
[2025-12-03 07:05:43] 2025-12-03 06:04:48,024 | INFO     | ..............................
[2025-12-03 07:05:43] 2025-12-03 06:04:48,437 | INFO     | time since job start (14255s) is within the limit (172800.0s)
[2025-12-03 07:05:43] 2025-12-03 06:04:48,437 | INFO     | 14255s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-12-03 07:05:43] 2025-12-03 06:04:48,447 | INFO     | 
[2025-12-03 07:05:43] 2025-12-03 06:04:48,447 | INFO     | job summary report
[2025-12-03 07:05:43] 2025-12-03 06:04:48,447 | INFO     | --------------------------------------------------
[2025-12-03 07:05:43] 2025-12-03 06:04:48,447 | INFO     | PanDA job id: 6901294337
[2025-12-03 07:05:43] 2025-12-03 06:04:48,447 | INFO     | task id: 47531111
[2025-12-03 07:05:43] 2025-12-03 06:04:48,447 | INFO     | errors: (none)
[2025-12-03 07:05:43] 2025-12-03 06:04:48,447 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 07:05:43] 2025-12-03 06:04:48,447 | INFO     | pilot state: finished 
[2025-12-03 07:05:43] 2025-12-03 06:04:48,448 | INFO     | transexitcode: 0
[2025-12-03 07:05:43] 2025-12-03 06:04:48,448 | INFO     | exeerrorcode: 0
[2025-12-03 07:05:43] 2025-12-03 06:04:48,448 | INFO     | exeerrordiag: 
[2025-12-03 07:05:43] 2025-12-03 06:04:48,448 | INFO     | exitcode: 0
[2025-12-03 07:05:43] 2025-12-03 06:04:48,448 | INFO     | exitmsg: OK
[2025-12-03 07:05:43] 2025-12-03 06:04:48,448 | INFO     | cpuconsumptiontime: 109438 s
[2025-12-03 07:05:43] 2025-12-03 06:04:48,448 | INFO     | nevents: 1000
[2025-12-03 07:05:43] 2025-12-03 06:04:48,448 | INFO     | neventsw: 0
[2025-12-03 07:05:43] 2025-12-03 06:04:48,448 | INFO     | pid: 14800
[2025-12-03 07:05:43] 2025-12-03 06:04:48,448 | INFO     | pgrp: 14800
[2025-12-03 07:05:43] 2025-12-03 06:04:48,448 | INFO     | corecount: 8
[2025-12-03 07:05:43] 2025-12-03 06:04:48,448 | INFO     | event service: False
[2025-12-03 07:05:43] 2025-12-03 06:04:48,448 | INFO     | sizes: {0: 2284580, 2: 2284842, 11: 2284870, 14235: 2335061, 14237: 2344141, 14241: 2344331}
[2025-12-03 07:05:43] 2025-12-03 06:04:48,448 | INFO     | --------------------------------------------------
[2025-12-03 07:05:43] 2025-12-03 06:04:48,448 | INFO     | 
[2025-12-03 07:05:43] 2025-12-03 06:04:48,448 | INFO     | executing command: ls -lF /tmp/job_10946545/atlas/pilot/slots/0
[2025-12-03 07:05:43] 2025-12-03 06:04:48,458 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 07:05:43] 2025-12-03 06:04:48,458 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 07:05:43] 2025-12-03 06:04:48,458 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 07:05:43] 2025-12-03 06:04:48,458 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 07:05:43] 2025-12-03 06:04:48,458 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 07:05:43] 2025-12-03 06:04:48,458 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 07:05:43] 2025-12-03 06:04:48,458 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 07:05:43] 2025-12-03 06:04:48,458 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 07:05:43] 2025-12-03 06:04:48,458 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 07:05:43] 2025-12-03 06:04:48,458 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 07:05:43] 2025-12-03 06:04:48,458 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 07:05:43] 2025-12-03 06:04:48,458 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 07:05:43] 2025-12-03 06:04:48,458 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 07:05:43] 2025-12-03 06:04:48,458 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 07:05:43] 2025-12-03 06:04:48,458 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 07:05:43] 2025-12-03 06:04:48,458 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 07:05:43] 2025-12-03 06:04:48,459 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 07:05:43] 2025-12-03 06:04:48,459 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 07:05:43] 2025-12-03 06:04:48,459 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 07:05:43] 2025-12-03 06:04:48,459 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 07:05:43] 2025-12-03 06:04:48,459 | INFO     | job 6901294337 has completed (purged errors)
[2025-12-03 07:05:43] 2025-12-03 06:04:48,459 | INFO     | overall cleanup function is called
[2025-12-03 07:05:43] 2025-12-03 06:04:49,466 | INFO     | --- collectZombieJob: --- 10, [14800]
[2025-12-03 07:05:43] 2025-12-03 06:04:49,466 | INFO     | zombie collector waiting for pid 14800
[2025-12-03 07:05:43] 2025-12-03 06:04:49,466 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 07:05:43] 2025-12-03 06:04:49,466 | INFO     | collected zombie processes
[2025-12-03 07:05:43] 2025-12-03 06:04:49,466 | INFO     | will attempt to kill all subprocesses of pid=14800
[2025-12-03 07:05:43] 2025-12-03 06:04:49,625 | INFO     | process IDs to be killed: [14800] (in reverse order)
[2025-12-03 07:05:43] 2025-12-03 06:04:49,671 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 07:05:43] 2025-12-03 06:04:49,672 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 07:05:43] 2025-12-03 06:04:49,677 | INFO     | did not find any defunct processes belonging to 14800
[2025-12-03 07:05:43] 2025-12-03 06:04:49,682 | INFO     | did not find any defunct processes belonging to 14800
[2025-12-03 07:05:43] 2025-12-03 06:04:49,683 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 07:05:43] 2025-12-03 06:04:49,683 | INFO     | ready for new job
[2025-12-03 07:05:43] 2025-12-03 06:04:49,683 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 07:05:43] 2025-12-03 06:04:49,684 | INFO     | ***************************************
[2025-12-03 07:05:43] 2025-12-03 06:04:49,684 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 07:05:43] 2025-12-03 06:04:49,684 | INFO     | ***************************************
[2025-12-03 07:05:43] 2025-12-03 06:04:49,684 | INFO     | 
[2025-12-03 07:05:43] 2025-12-03 06:04:49,699 | INFO     | architecture information:
[2025-12-03 07:05:43] 2025-12-03 06:04:49,699 | INFO     | executing command: cat /etc/os-release
[2025-12-03 07:05:43] 2025-12-03 06:04:49,706 | INFO     | cat /etc/os-release:
[2025-12-03 07:05:43] NAME="CentOS Linux"
[2025-12-03 07:05:43] VERSION="7 (Core)"
[2025-12-03 07:05:43] ID="centos"
[2025-12-03 07:05:43] ID_LIKE="rhel fedora"
[2025-12-03 07:05:43] VERSION_ID="7"
[2025-12-03 07:05:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 07:05:43] ANSI_COLOR="0;31"
[2025-12-03 07:05:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 07:05:43] HOME_URL="https://www.centos.org/"
[2025-12-03 07:05:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 07:05:43] 
[2025-12-03 07:05:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 07:05:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 07:05:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 07:05:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 07:05:43] 
[2025-12-03 07:05:43] 2025-12-03 06:04:49,706 | INFO     | ***************************************
[2025-12-03 07:05:43] 2025-12-03 06:04:50,209 | INFO     | executing command: df -mP /tmp/job_10946545/atlas/pilot/slots/0
[2025-12-03 07:05:43] 2025-12-03 06:04:50,216 | INFO     | sufficient remaining disk space (222807719936 B)
[2025-12-03 07:05:43] 2025-12-03 06:04:50,216 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 07:05:43] 2025-12-03 06:04:50,216 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 07:05:43] 2025-12-03 06:04:50,216 | INFO     | update_server=False
[2025-12-03 07:05:43] 2025-12-03 06:04:50,216 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 07:05:43] 2025-12-03 06:04:50,216 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-12-03 07:05:43] 2025-12-03 06:04:50,216 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 07:05:43] 2025-12-03 06:04:50,216 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 07:05:43] 2025-12-03 06:04:50,216 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 07:05:43] 2025-12-03 06:04:50,217 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 07:05:43] 2025-12-03 06:04:50,311 | INFO     | all job control threads have been joined
[2025-12-03 07:05:43] 2025-12-03 06:04:50,357 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 07:05:43] 2025-12-03 06:04:50,764 | INFO     | all data control threads have been joined
[2025-12-03 07:05:43] 2025-12-03 06:04:50,999 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 07:05:43] 2025-12-03 06:04:50,999 | INFO     | aborting loop
[2025-12-03 07:05:43] 2025-12-03 06:04:51,221 | INFO     | [job] retrieve thread has finished
[2025-12-03 07:05:43] 2025-12-03 06:04:51,306 | INFO     | [payload] validate_post thread has finished
[2025-12-03 07:05:43] 2025-12-03 06:04:51,316 | INFO     | [job] control thread has finished
[2025-12-03 07:05:43] 2025-12-03 06:04:51,423 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 07:05:43] 2025-12-03 06:04:51,576 | INFO     | all payload control threads have been joined
[2025-12-03 07:05:43] 2025-12-03 06:04:51,640 | INFO     | [payload] failed_post thread has finished
[2025-12-03 07:05:43] 2025-12-03 06:04:51,769 | INFO     | [data] control thread has finished
[2025-12-03 07:05:43] 2025-12-03 06:04:51,993 | INFO     | [job] validate thread has finished
[2025-12-03 07:05:43] 2025-12-03 06:04:52,004 | INFO     | [job] job monitor thread has finished
[2025-12-03 07:05:43] 2025-12-03 06:04:52,222 | INFO     | [data] copytool_out thread has finished
[2025-12-03 07:05:43] 2025-12-03 06:04:52,232 | INFO     | [data] copytool_in thread has finished
[2025-12-03 07:05:43] 2025-12-03 06:04:52,247 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 07:05:43] 2025-12-03 06:04:52,581 | INFO     | [payload] control thread has finished
[2025-12-03 07:05:43] 2025-12-03 06:04:52,623 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 07:05:43] 2025-12-03 06:04:53,085 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 07:05:43] 2025-12-03 06:04:54,091 | INFO     | [job] queue monitor thread has finished
[2025-12-03 07:05:43] 2025-12-03 06:04:54,362 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 07:05:43] 2025-12-03 06:05:01,166 | INFO     | job.realtimelogging is not enabled
[2025-12-03 07:05:43] 2025-12-03 06:05:02,171 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 07:05:43] 2025-12-03 06:05:37,149 | INFO     | [monitor] cgroup control has ended
[2025-12-03 07:05:43] 2025-12-03 06:05:38,428 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456065021696)>']
[2025-12-03 07:05:43] 2025-12-03 06:05:38,455 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 07:05:43] 2025-12-03 06:05:38,455 | INFO     | [monitor] control thread has ended
[2025-12-03 07:05:43] 2025-12-03 06:05:43,453 | INFO     | all workflow threads have been joined
[2025-12-03 07:05:43] 2025-12-03 06:05:43,453 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 07:05:43] 2025-12-03 06:05:43,453 | INFO     | traces error code: 0
[2025-12-03 07:05:43] 2025-12-03 06:05:43,453 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 07:05:43] 2025-12-03 06:05:43,510 [wrapper] ==== pilot stdout END ====
[2025-12-03 07:05:43] 2025-12-03 06:05:43,512 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 07:05:43] 2025-12-03 06:05:43,513 [wrapper] pilotpid: 4363
[2025-12-03 07:05:43] 2025-12-03 06:05:43,514 [wrapper] Pilot exit status: 0
[2025-12-03 07:05:43] 2025-12-03 06:05:43,519 [wrapper] pandaids: 6901294337
[2025-12-03 07:05:43] 2025-12-03 06:05:43,554 [wrapper] cleanup supervisor_pilot 23525 4364
[2025-12-03 07:05:43] 2025-12-03 06:05:43,556 [wrapper] Test setup, not cleaning
[2025-12-03 07:05:43] 2025-12-03 06:05:43,557 [wrapper] apfmon messages muted
[2025-12-03 07:05:43] 2025-12-03 06:05:43,558 [wrapper] ==== wrapper stdout END ====
[2025-12-03 07:05:43] 2025-12-03 06:05:43,560 [wrapper] ==== wrapper stderr END ====
[2025-12-03 07:05:43]  *** Error codes and diagnostics ***
[2025-12-03 07:05:43]     "exeErrorCode": 0,
[2025-12-03 07:05:43]     "exeErrorDiag": "",
[2025-12-03 07:05:43]     "pilotErrorCode": 0,
[2025-12-03 07:05:43]     "pilotErrorDiag": "",
[2025-12-03 07:05:43]  *** Listing of results directory ***
[2025-12-03 07:05:43] total 1074960
[2025-12-03 07:05:43] -rw------- 1 mf493845 unix-user    576529 Nov 29 10:19 pilot3.tar.gz
[2025-12-03 07:05:43] -rwx------ 1 mf493845 unix-user     36292 Nov 29 10:22 runpilot2-wrapper.sh
[2025-12-03 07:05:43] -rw------- 1 mf493845 unix-user      5112 Nov 29 10:26 queuedata.json
[2025-12-03 07:05:43] -rw------- 1 mf493845 unix-user       100 Dec  3 01:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 07:05:43] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  3 01:30 run_atlas
[2025-12-03 07:05:43] -rw------- 1 mf493845 unix-user       105 Dec  3 01:30 job.xml
[2025-12-03 07:05:43] -rw-r--r-- 2 mf493845 unix-user 379967005 Dec  3 03:07 EVNT.47531104._000102.pool.root.1
[2025-12-03 07:05:43] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 03:07 start_atlas.sh
[2025-12-03 07:05:43] drwxrwx--x 2 mf493845 unix-user       100 Dec  3 03:07 shared
[2025-12-03 07:05:43] -rw-r--r-- 2 mf493845 unix-user    590123 Dec  3 03:07 input.tar.gz
[2025-12-03 07:05:43] -rw------- 1 mf493845 unix-user      6390 Dec  3 03:07 init_data.xml
[2025-12-03 07:05:43] -rw------- 1 mf493845 unix-user         0 Dec  3 03:07 boinc_setup_complete
[2025-12-03 07:05:43] -rw------- 1 mf493845 unix-user      8192 Dec  3 03:07 boinc_mmap_file
[2025-12-03 07:05:43] -rw------- 1 mf493845 unix-user         0 Dec  3 03:07 boinc_lockfile
[2025-12-03 07:05:43] -rw------- 1 mf493845 unix-user      2881 Dec  3 03:07 pandaJob.out
[2025-12-03 07:05:43] -rw------- 1 mf493845 unix-user    989300 Dec  3 03:07 agis_schedconf.cvmfs.json
[2025-12-03 07:05:43] drwx------ 5 mf493845 unix-user       440 Dec  3 03:07 pilot3
[2025-12-03 07:05:43] -rw------- 1 mf493845 unix-user 709549214 Dec  3 07:04 HITS.47531111._001007.pool.root.1
[2025-12-03 07:05:43] -rw------- 1 mf493845 unix-user      1032 Dec  3 07:04 memory_monitor_summary.json
[2025-12-03 07:05:43] -rw------- 1 mf493845 unix-user   1516240 Dec  3 07:04 agis_ddmendpoints.agis.ALL.json
[2025-12-03 07:05:43] -rw------- 1 mf493845 unix-user   1636220 Dec  3 07:04 log.47531111._001007.job.log.tgz.1
[2025-12-03 07:05:43] -rw------- 1 mf493845 unix-user        95 Dec  3 07:04 pilot_heartbeat.json
[2025-12-03 07:05:43] -rw------- 1 mf493845 unix-user     27780 Dec  3 07:04 heartbeat.json
[2025-12-03 07:05:43] -rw------- 1 mf493845 unix-user      4638 Dec  3 07:05 pilotlog.txt
[2025-12-03 07:05:43] -rw------- 1 mf493845 unix-user   2024406 Dec  3 07:05 log.47531111._001007.job.log.1
[2025-12-03 07:05:43] -rw------- 1 mf493845 unix-user       353 Dec  3 07:05 output.list
[2025-12-03 07:05:43] -rw------- 1 mf493845 unix-user       620 Dec  3 07:05 runtime_log
[2025-12-03 07:05:43] -rw------- 1 mf493845 unix-user   3696640 Dec  3 07:05 result.tar.gz
[2025-12-03 07:05:43] -rw------- 1 mf493845 unix-user      9221 Dec  3 07:05 runtime_log.err
[2025-12-03 07:05:43] -rw------- 1 mf493845 unix-user       650 Dec  3 07:05 JTLODmTLWj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm1DPKDmZpmP3m.diag
[2025-12-03 07:05:43] -rw------- 1 mf493845 unix-user     21637 Dec  3 07:05 stderr.txt
[2025-12-03 07:05:43] HITS file was successfully produced:
[2025-12-03 07:05:43] -rw------- 1 mf493845 unix-user 709549214 Dec  3 07:04 shared/HITS.pool.root.1
[2025-12-03 07:05:43]  *** Contents of shared directory: ***
[2025-12-03 07:05:43] total 1068192
[2025-12-03 07:05:43] -rw-r--r-- 2 mf493845 unix-user 379967005 Dec  3 03:07 ATLAS.root_0
[2025-12-03 07:05:43] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 03:07 start_atlas.sh
[2025-12-03 07:05:43] -rw-r--r-- 2 mf493845 unix-user    590123 Dec  3 03:07 input.tar.gz
[2025-12-03 07:05:43] -rw------- 1 mf493845 unix-user 709549214 Dec  3 07:04 HITS.pool.root.1
[2025-12-03 07:05:43] -rw------- 1 mf493845 unix-user   3696640 Dec  3 07:05 result.tar.gz
07:05:45 (31166): run_atlas exited; CPU time 109712.333657
07:05:45 (31166): called boinc_finish(0)

</stderr_txt>
]]>

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