Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
02:28:25 (31236): wrapper (7.7.26015): starting
02:28:25 (31236): wrapper: running run_atlas (--nthreads 8)
[2025-12-03 02:28:25] Arguments: --nthreads 8
[2025-12-03 02:28:25] Threads: 8
[2025-12-03 02:28:25] Checking for CVMFS
[2025-12-03 02:28:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 02:28:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 02:28:26] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 02:28:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 02:28:26] 2.11.0.0 4417 75251 117508 153576 3 56 3246690 4096001 4689 130560 7 8348213 99.402 7897927 679 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-03 02:28:26] CVMFS is ok
[2025-12-03 02:28:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-03 02:28:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-03 02:28:26] Further information can be found at the LHC@home message board.
[2025-12-03 02:28:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 02:28:26] Checking for apptainer binary...
[2025-12-03 02:28:26] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-03 02:28:26] apptainer is not installed, using version from CVMFS
[2025-12-03 02:28:26] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 02:28:26] WARNING: Environment variable TMPDIR already has value [/tmp/job_10946507/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node241
[2025-12-03 02:28:26] apptainer works
[2025-12-03 02:28:26] Set ATHENA_PROC_NUMBER=8
[2025-12-03 02:28:26] Set ATHENA_CORE_NUMBER=8
[2025-12-03 02:28:26] Starting ATLAS job with PandaID=6904565400
[2025-12-03 02:28:26] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10946507/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 04:15:54]  *** The last 200 lines of the pilot log: ***
[2025-12-03 04:15:54] 2025-12-03 03:15:20,528 | INFO     | log transfer has been attempted: DONE
[2025-12-03 04:15:54] 2025-12-03 03:15:20,528 | INFO     | job 6904565400 has finished - writing final server update
[2025-12-03 04:15:54] 2025-12-03 03:15:20,528 | INFO     | total number of processed events: 400 (read)
[2025-12-03 04:15:54] 2025-12-03 03:15:20,528 | INFO     | executing command: lscpu
[2025-12-03 04:15:54] 2025-12-03 03:15:20,558 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-03 04:15:54] 2025-12-03 03:15:21,187 | INFO     | time since job start (6410s) is within the limit (172800.0s)
[2025-12-03 04:15:54] 2025-12-03 03:15:21,508 | INFO     | monitor loop #470: job 0:6904565400 is in state 'finished'
[2025-12-03 04:15:54] 2025-12-03 03:15:21,508 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 04:15:54] 2025-12-03 03:15:22,337 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 04:15:54] 2025-12-03 03:15:22,342 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2879.9096562499994
[2025-12-03 04:15:54] 2025-12-03 03:15:22,347 | INFO     | using path: /tmp/job_10946507/atlas/pilot/slots/0/PanDA_Pilot-6904565400/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 04:15:54] 2025-12-03 03:15:22,347 | INFO     | extracted standard info from prmon json
[2025-12-03 04:15:54] 2025-12-03 03:15:22,347 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 04:15:54] 2025-12-03 03:15:22,347 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 04:15:54] 2025-12-03 03:15:22,347 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-03 04:15:54] 2025-12-03 03:15:22,347 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-03 04:15:54] 2025-12-03 03:15:22,348 | INFO     | fitting pss+swap vs Time
[2025-12-03 04:15:54] 2025-12-03 03:15:22,349 | INFO     | sum of square deviations: 358927660.0
[2025-12-03 04:15:54] 2025-12-03 03:15:22,349 | INFO     | sum of deviations: -16842893915.000002
[2025-12-03 04:15:54] 2025-12-03 03:15:22,349 | INFO     | mean x: 1764728500.0
[2025-12-03 04:15:54] 2025-12-03 03:15:22,349 | INFO     | mean y: 2745624.1428571427
[2025-12-03 04:15:54] 2025-12-03 03:15:22,349 | INFO     | intersect: 82813680045.51645
[2025-12-03 04:15:54] 2025-12-03 03:15:22,349 | INFO     | chi2: 1.354096443444923
[2025-12-03 04:15:54] 2025-12-03 03:15:22,349 | INFO     | sum of square deviations: 310052325.0
[2025-12-03 04:15:54] 2025-12-03 03:15:22,349 | INFO     | sum of deviations: -14719710072.499994
[2025-12-03 04:15:54] 2025-12-03 03:15:22,350 | INFO     | mean x: 1764728347.5
[2025-12-03 04:15:54] 2025-12-03 03:15:22,350 | INFO     | mean y: 2752253.97
[2025-12-03 04:15:54] 2025-12-03 03:15:22,350 | INFO     | intersect: 83783093626.7432
[2025-12-03 04:15:54] 2025-12-03 03:15:22,350 | INFO     | chi2: 1.3530345010967375
[2025-12-03 04:15:54] 2025-12-03 03:15:22,350 | INFO     | current chi2=1.3530345010967375 (change=0.07842442488688632 %)
[2025-12-03 04:15:54] 2025-12-03 03:15:22,350 | INFO     | right removable region: 99
[2025-12-03 04:15:54] 2025-12-03 03:15:22,350 | INFO     | sum of square deviations: 310052325.0
[2025-12-03 04:15:54] 2025-12-03 03:15:22,350 | INFO     | sum of deviations: -28554199094.5
[2025-12-03 04:15:54] 2025-12-03 03:15:22,350 | INFO     | mean x: 1764728652.5
[2025-12-03 04:15:54] 2025-12-03 03:15:22,350 | INFO     | mean y: 2781009.93
[2025-12-03 04:15:54] 2025-12-03 03:15:22,350 | INFO     | intersect: 162525069114.861
[2025-12-03 04:15:54] 2025-12-03 03:15:22,350 | INFO     | chi2: 0.15815301130858317
[2025-12-03 04:15:54] 2025-12-03 03:15:22,350 | INFO     | current chi2=0.15815301130858317 (change=88.32040272506512 %)
[2025-12-03 04:15:54] 2025-12-03 03:15:22,351 | INFO     | sum of square deviations: 265828240.0
[2025-12-03 04:15:54] 2025-12-03 03:15:22,351 | INFO     | sum of deviations: -25901675430.000004
[2025-12-03 04:15:54] 2025-12-03 03:15:22,351 | INFO     | mean x: 1764728805.0
[2025-12-03 04:15:54] 2025-12-03 03:15:22,351 | INFO     | mean y: 2771834.347368421
[2025-12-03 04:15:54] 2025-12-03 03:15:22,351 | INFO     | intersect: 171953775719.72003
[2025-12-03 04:15:54] 2025-12-03 03:15:22,351 | INFO     | chi2: 0.1524941347716247
[2025-12-03 04:15:54] 2025-12-03 03:15:22,351 | INFO     | current chi2=0.1524941347716247 (change=3.5781023011424264 %)
[2025-12-03 04:15:54] 2025-12-03 03:15:22,351 | INFO     | left removable region: 20
[2025-12-03 04:15:54] 2025-12-03 03:15:22,351 | INFO     | sum of square deviations: 152858680.0
[2025-12-03 04:15:54] 2025-12-03 03:15:22,351 | INFO     | sum of deviations: -17244927225.0
[2025-12-03 04:15:54] 2025-12-03 03:15:22,351 | INFO     | mean x: 1764728927.0
[2025-12-03 04:15:54] 2025-12-03 03:15:22,351 | INFO     | mean y: 2754964.164556962
[2025-12-03 04:15:54] 2025-12-03 03:15:22,351 | INFO     | intersect: 199092671990.57965
[2025-12-03 04:15:54] 2025-12-03 03:15:22,352 | INFO     | chi2: 0.1377628498124667
[2025-12-03 04:15:54] 2025-12-03 03:15:22,352 | INFO     | current memory leak: -112.82 B/s (using 79 data points, chi2=0.14)
[2025-12-03 04:15:54] 2025-12-03 03:15:22,352 | INFO     | could have reported an average CPU frequency of 2922 MHz (7 samples)
[2025-12-03 04:15:54] 2025-12-03 03:15:22,352 | INFO     | ..............................
[2025-12-03 04:15:54] 2025-12-03 03:15:22,352 | INFO     | . Timing measurements:
[2025-12-03 04:15:54] 2025-12-03 03:15:22,352 | INFO     | . get job = 0 s
[2025-12-03 04:15:54] 2025-12-03 03:15:22,352 | INFO     | . initial setup = 1 s
[2025-12-03 04:15:54] 2025-12-03 03:15:22,352 | INFO     | . payload setup = 2 s
[2025-12-03 04:15:54] 2025-12-03 03:15:22,352 | INFO     | . stage-in = 0 s
[2025-12-03 04:15:54] 2025-12-03 03:15:22,352 | INFO     | . payload execution = 6387 s
[2025-12-03 04:15:54] 2025-12-03 03:15:22,352 | INFO     | . stage-out = 0 s
[2025-12-03 04:15:54] 2025-12-03 03:15:22,352 | INFO     | . log creation = 0 s
[2025-12-03 04:15:54] 2025-12-03 03:15:22,352 | INFO     | ..............................
[2025-12-03 04:15:54] 2025-12-03 03:15:22,400 | INFO     | 
[2025-12-03 04:15:54] 2025-12-03 03:15:22,400 | INFO     | job summary report
[2025-12-03 04:15:54] 2025-12-03 03:15:22,400 | INFO     | --------------------------------------------------
[2025-12-03 04:15:54] 2025-12-03 03:15:22,400 | INFO     | PanDA job id: 6904565400
[2025-12-03 04:15:54] 2025-12-03 03:15:22,401 | INFO     | task id: 47523877
[2025-12-03 04:15:54] 2025-12-03 03:15:22,401 | INFO     | errors: (none)
[2025-12-03 04:15:54] 2025-12-03 03:15:22,401 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 04:15:54] 2025-12-03 03:15:22,401 | INFO     | pilot state: finished 
[2025-12-03 04:15:54] 2025-12-03 03:15:22,401 | INFO     | transexitcode: 0
[2025-12-03 04:15:54] 2025-12-03 03:15:22,401 | INFO     | exeerrorcode: 0
[2025-12-03 04:15:54] 2025-12-03 03:15:22,401 | INFO     | exeerrordiag: 
[2025-12-03 04:15:54] 2025-12-03 03:15:22,401 | INFO     | exitcode: 0
[2025-12-03 04:15:54] 2025-12-03 03:15:22,401 | INFO     | exitmsg: OK
[2025-12-03 04:15:54] 2025-12-03 03:15:22,401 | INFO     | cpuconsumptiontime: 47062 s
[2025-12-03 04:15:54] 2025-12-03 03:15:22,401 | INFO     | nevents: 400
[2025-12-03 04:15:54] 2025-12-03 03:15:22,401 | INFO     | neventsw: 0
[2025-12-03 04:15:54] 2025-12-03 03:15:22,401 | INFO     | pid: 12323
[2025-12-03 04:15:54] 2025-12-03 03:15:22,401 | INFO     | pgrp: 12323
[2025-12-03 04:15:54] 2025-12-03 03:15:22,401 | INFO     | corecount: 8
[2025-12-03 04:15:54] 2025-12-03 03:15:22,401 | INFO     | event service: False
[2025-12-03 04:15:54] 2025-12-03 03:15:22,401 | INFO     | sizes: {0: 2284054, 2: 2284316, 11: 2284344, 6393: 2311543, 6395: 2320627, 6399: 2320765}
[2025-12-03 04:15:54] 2025-12-03 03:15:22,401 | INFO     | --------------------------------------------------
[2025-12-03 04:15:54] 2025-12-03 03:15:22,401 | INFO     | 
[2025-12-03 04:15:54] 2025-12-03 03:15:22,401 | INFO     | executing command: ls -lF /tmp/job_10946507/atlas/pilot/slots/0
[2025-12-03 04:15:54] 2025-12-03 03:15:22,410 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 04:15:54] 2025-12-03 03:15:22,410 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 04:15:54] 2025-12-03 03:15:22,411 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 04:15:54] 2025-12-03 03:15:22,411 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 04:15:54] 2025-12-03 03:15:22,411 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 04:15:54] 2025-12-03 03:15:22,411 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 04:15:54] 2025-12-03 03:15:22,411 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 04:15:54] 2025-12-03 03:15:22,411 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 04:15:54] 2025-12-03 03:15:22,411 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 04:15:54] 2025-12-03 03:15:22,411 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 04:15:54] 2025-12-03 03:15:22,411 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 04:15:54] 2025-12-03 03:15:22,411 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 04:15:54] 2025-12-03 03:15:22,411 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 04:15:54] 2025-12-03 03:15:22,411 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 04:15:54] 2025-12-03 03:15:22,411 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 04:15:54] 2025-12-03 03:15:22,411 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 04:15:54] 2025-12-03 03:15:22,411 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 04:15:54] 2025-12-03 03:15:22,411 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 04:15:54] 2025-12-03 03:15:22,411 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 04:15:54] 2025-12-03 03:15:22,411 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 04:15:54] 2025-12-03 03:15:22,411 | INFO     | job 6904565400 has completed (purged errors)
[2025-12-03 04:15:54] 2025-12-03 03:15:22,411 | INFO     | overall cleanup function is called
[2025-12-03 04:15:54] 2025-12-03 03:15:23,417 | INFO     | --- collectZombieJob: --- 10, [12323]
[2025-12-03 04:15:54] 2025-12-03 03:15:23,417 | INFO     | zombie collector waiting for pid 12323
[2025-12-03 04:15:54] 2025-12-03 03:15:23,417 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 04:15:54] 2025-12-03 03:15:23,418 | INFO     | collected zombie processes
[2025-12-03 04:15:54] 2025-12-03 03:15:23,418 | INFO     | will attempt to kill all subprocesses of pid=12323
[2025-12-03 04:15:54] 2025-12-03 03:15:23,529 | INFO     | process IDs to be killed: [12323] (in reverse order)
[2025-12-03 04:15:54] 2025-12-03 03:15:23,573 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 04:15:54] 2025-12-03 03:15:23,573 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 04:15:54] 2025-12-03 03:15:23,577 | INFO     | did not find any defunct processes belonging to 12323
[2025-12-03 04:15:54] 2025-12-03 03:15:23,580 | INFO     | did not find any defunct processes belonging to 12323
[2025-12-03 04:15:54] 2025-12-03 03:15:23,581 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 04:15:54] 2025-12-03 03:15:23,581 | INFO     | ready for new job
[2025-12-03 04:15:54] 2025-12-03 03:15:23,581 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 04:15:54] 2025-12-03 03:15:23,582 | INFO     | ***************************************
[2025-12-03 04:15:54] 2025-12-03 03:15:23,582 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 04:15:54] 2025-12-03 03:15:23,582 | INFO     | ***************************************
[2025-12-03 04:15:54] 2025-12-03 03:15:23,582 | INFO     | 
[2025-12-03 04:15:54] 2025-12-03 03:15:23,596 | INFO     | architecture information:
[2025-12-03 04:15:54] 2025-12-03 03:15:23,596 | INFO     | executing command: cat /etc/os-release
[2025-12-03 04:15:54] 2025-12-03 03:15:23,604 | INFO     | cat /etc/os-release:
[2025-12-03 04:15:54] NAME="CentOS Linux"
[2025-12-03 04:15:54] VERSION="7 (Core)"
[2025-12-03 04:15:54] ID="centos"
[2025-12-03 04:15:54] ID_LIKE="rhel fedora"
[2025-12-03 04:15:54] VERSION_ID="7"
[2025-12-03 04:15:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 04:15:54] ANSI_COLOR="0;31"
[2025-12-03 04:15:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 04:15:54] HOME_URL="https://www.centos.org/"
[2025-12-03 04:15:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 04:15:54] 
[2025-12-03 04:15:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 04:15:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 04:15:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 04:15:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 04:15:54] 
[2025-12-03 04:15:54] 2025-12-03 03:15:23,604 | INFO     | ***************************************
[2025-12-03 04:15:54] 2025-12-03 03:15:24,107 | INFO     | executing command: df -mP /tmp/job_10946507/atlas/pilot/slots/0
[2025-12-03 04:15:54] 2025-12-03 03:15:24,113 | INFO     | sufficient remaining disk space (221016752128 B)
[2025-12-03 04:15:54] 2025-12-03 03:15:24,113 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 04:15:54] 2025-12-03 03:15:24,113 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 04:15:54] 2025-12-03 03:15:24,113 | INFO     | update_server=False
[2025-12-03 04:15:54] 2025-12-03 03:15:24,113 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 04:15:54] 2025-12-03 03:15:24,114 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 04:15:54] 2025-12-03 03:15:24,255 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 04:15:54] 2025-12-03 03:15:24,681 | INFO     | all payload control threads have been joined
[2025-12-03 04:15:54] 2025-12-03 03:15:24,687 | INFO     | all job control threads have been joined
[2025-12-03 04:15:54] 2025-12-03 03:15:24,843 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 04:15:54] 2025-12-03 03:15:25,016 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 04:15:54] 2025-12-03 03:15:25,016 | INFO     | aborting loop
[2025-12-03 04:15:54] 2025-12-03 03:15:25,083 | INFO     | all data control threads have been joined
[2025-12-03 04:15:54] 2025-12-03 03:15:25,119 | INFO     | [job] retrieve thread has finished
[2025-12-03 04:15:54] 2025-12-03 03:15:25,119 | INFO     | [job] queue monitor thread has finished
[2025-12-03 04:15:54] 2025-12-03 03:15:25,174 | INFO     | [data] copytool_in thread has finished
[2025-12-03 04:15:54] 2025-12-03 03:15:25,268 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 04:15:54] 2025-12-03 03:15:25,476 | INFO     | [payload] failed_post thread has finished
[2025-12-03 04:15:54] 2025-12-03 03:15:25,686 | INFO     | [payload] control thread has finished
[2025-12-03 04:15:54] 2025-12-03 03:15:25,693 | INFO     | [job] control thread has finished
[2025-12-03 04:15:54] 2025-12-03 03:15:25,817 | INFO     | [payload] validate_post thread has finished
[2025-12-03 04:15:54] 2025-12-03 03:15:26,021 | INFO     | [job] job monitor thread has finished
[2025-12-03 04:15:54] 2025-12-03 03:15:26,087 | INFO     | [data] control thread has finished
[2025-12-03 04:15:54] 2025-12-03 03:15:26,260 | INFO     | [data] copytool_out thread has finished
[2025-12-03 04:15:54] 2025-12-03 03:15:26,345 | INFO     | [job] validate thread has finished
[2025-12-03 04:15:54] 2025-12-03 03:15:26,370 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 04:15:54] 2025-12-03 03:15:26,539 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 04:15:54] 2025-12-03 03:15:26,566 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 04:15:54] 2025-12-03 03:15:28,848 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 04:15:54] 2025-12-03 03:15:41,696 | INFO     | [monitor] cgroup control has ended
[2025-12-03 04:15:54] 2025-12-03 03:15:41,705 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456065021696)>']
[2025-12-03 04:15:54] 2025-12-03 03:15:46,730 | INFO     | all workflow threads have been joined
[2025-12-03 04:15:54] 2025-12-03 03:15:46,730 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 04:15:54] 2025-12-03 03:15:46,730 | INFO     | traces error code: 0
[2025-12-03 04:15:54] 2025-12-03 03:15:46,730 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 04:15:54] 2025-12-03 03:15:54,390 | INFO     | PID=3987 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-03 04:15:54] 2025-12-03 03:15:54,390 | INFO     | .. there are 6 such processes running
[2025-12-03 04:15:54] 2025-12-03 03:15:54,390 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 04:15:54] 2025-12-03 03:15:54,390 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 04:15:54] 2025-12-03 03:15:54,390 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 04:15:54] 2025-12-03 03:15:54,390 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 04:15:54] 2025-12-03 03:15:54,390 | INFO     | [monitor] control thread has ended
[2025-12-03 04:15:54] 2025-12-03 03:15:54,445 [wrapper] ==== pilot stdout END ====
[2025-12-03 04:15:54] 2025-12-03 03:15:54,446 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 04:15:54] 2025-12-03 03:15:54,447 [wrapper] pilotpid: 3987
[2025-12-03 04:15:54] 2025-12-03 03:15:54,448 [wrapper] Pilot exit status: 0
[2025-12-03 04:15:54] 2025-12-03 03:15:54,453 [wrapper] pandaids: 6904565400
[2025-12-03 04:15:54] 2025-12-03 03:15:54,477 [wrapper] cleanup supervisor_pilot  3604 3988
[2025-12-03 04:15:54] 2025-12-03 03:15:54,478 [wrapper] Test setup, not cleaning
[2025-12-03 04:15:54] 2025-12-03 03:15:54,479 [wrapper] apfmon messages muted
[2025-12-03 04:15:54] 2025-12-03 03:15:54,480 [wrapper] ==== wrapper stdout END ====
[2025-12-03 04:15:54] 2025-12-03 03:15:54,482 [wrapper] ==== wrapper stderr END ====
[2025-12-03 04:15:54]  *** Error codes and diagnostics ***
[2025-12-03 04:15:54]     "exeErrorCode": 0,
[2025-12-03 04:15:54]     "exeErrorDiag": "",
[2025-12-03 04:15:54]     "pilotErrorCode": 0,
[2025-12-03 04:15:54]     "pilotErrorDiag": "",
[2025-12-03 04:15:54]  *** Listing of results directory ***
[2025-12-03 04:15:54] total 620380
[2025-12-03 04:15:54] -rw------- 1 mf493845 unix-user    576529 Nov 29 10:19 pilot3.tar.gz
[2025-12-03 04:15:54] -rwx------ 1 mf493845 unix-user     36292 Nov 29 10:22 runpilot2-wrapper.sh
[2025-12-03 04:15:54] -rw------- 1 mf493845 unix-user      5112 Nov 29 10:25 queuedata.json
[2025-12-03 04:15:54] -rw------- 1 mf493845 unix-user       100 Dec  3 01:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 04:15:54] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  3 01:10 run_atlas
[2025-12-03 04:15:54] -rw------- 1 mf493845 unix-user       105 Dec  3 01:10 job.xml
[2025-12-03 04:15:54] -rw-r--r-- 2 mf493845 unix-user 306422653 Dec  3 02:28 EVNT.47523873._000002.pool.root.1
[2025-12-03 04:15:54] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 02:28 start_atlas.sh
[2025-12-03 04:15:54] drwxrwx--x 2 mf493845 unix-user       100 Dec  3 02:28 shared
[2025-12-03 04:15:54] -rw-r--r-- 2 mf493845 unix-user    589973 Dec  3 02:28 input.tar.gz
[2025-12-03 04:15:54] -rw------- 1 mf493845 unix-user      6392 Dec  3 02:28 init_data.xml
[2025-12-03 04:15:54] -rw------- 1 mf493845 unix-user         0 Dec  3 02:28 boinc_setup_complete
[2025-12-03 04:15:54] -rw------- 1 mf493845 unix-user      8192 Dec  3 02:28 boinc_mmap_file
[2025-12-03 04:15:54] -rw------- 1 mf493845 unix-user         0 Dec  3 02:28 boinc_lockfile
[2025-12-03 04:15:54] -rw------- 1 mf493845 unix-user      2641 Dec  3 02:28 pandaJob.out
[2025-12-03 04:15:54] -rw------- 1 mf493845 unix-user    989300 Dec  3 02:28 agis_schedconf.cvmfs.json
[2025-12-03 04:15:54] -rw------- 1 mf493845 unix-user   1516240 Dec  3 02:28 agis_ddmendpoints.agis.ALL.json
[2025-12-03 04:15:54] drwx------ 5 mf493845 unix-user       440 Dec  3 02:28 pilot3
[2025-12-03 04:15:54] -rw------- 1 mf493845 unix-user 322368914 Dec  3 04:14 HITS.47523877._000163.pool.root.1
[2025-12-03 04:15:54] -rw------- 1 mf493845 unix-user        95 Dec  3 04:14 pilot_heartbeat.json
[2025-12-03 04:15:54] -rw------- 1 mf493845 unix-user      1016 Dec  3 04:15 memory_monitor_summary.json
[2025-12-03 04:15:54] -rw------- 1 mf493845 unix-user    350989 Dec  3 04:15 log.47523877._000163.job.log.tgz.1
[2025-12-03 04:15:54] -rw------- 1 mf493845 unix-user      7762 Dec  3 04:15 heartbeat.json
[2025-12-03 04:15:54] -rw------- 1 mf493845 unix-user       819 Dec  3 04:15 pilotlog.txt
[2025-12-03 04:15:54] -rw------- 1 mf493845 unix-user    945725 Dec  3 04:15 log.47523877._000163.job.log.1
[2025-12-03 04:15:54] -rw------- 1 mf493845 unix-user       357 Dec  3 04:15 output.list
[2025-12-03 04:15:54] -rw------- 1 mf493845 unix-user       620 Dec  3 04:15 runtime_log
[2025-12-03 04:15:54] -rw------- 1 mf493845 unix-user   1320960 Dec  3 04:15 result.tar.gz
[2025-12-03 04:15:54] -rw------- 1 mf493845 unix-user      9220 Dec  3 04:15 runtime_log.err
[2025-12-03 04:15:54] -rw------- 1 mf493845 unix-user       646 Dec  3 04:15 32XKDmtKWj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmcpLKDmun0snn.diag
[2025-12-03 04:15:54] -rw------- 1 mf493845 unix-user     21842 Dec  3 04:15 stderr.txt
[2025-12-03 04:15:54] HITS file was successfully produced:
[2025-12-03 04:15:54] -rw------- 1 mf493845 unix-user 322368914 Dec  3 04:14 shared/HITS.pool.root.1
[2025-12-03 04:15:54]  *** Contents of shared directory: ***
[2025-12-03 04:15:54] total 615948
[2025-12-03 04:15:54] -rw-r--r-- 2 mf493845 unix-user 306422653 Dec  3 02:28 ATLAS.root_0
[2025-12-03 04:15:54] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 02:28 start_atlas.sh
[2025-12-03 04:15:54] -rw-r--r-- 2 mf493845 unix-user    589973 Dec  3 02:28 input.tar.gz
[2025-12-03 04:15:54] -rw------- 1 mf493845 unix-user 322368914 Dec  3 04:14 HITS.pool.root.1
[2025-12-03 04:15:54] -rw------- 1 mf493845 unix-user   1320960 Dec  3 04:15 result.tar.gz
04:15:56 (31236): run_atlas exited; CPU time 47160.880462
04:15:56 (31236): called boinc_finish(0)

</stderr_txt>
]]>

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