Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:32:36 (5364): wrapper (7.7.26015): starting
16:32:36 (5364): wrapper: running run_atlas (--nthreads 8)
[2025-12-03 16:32:36] Arguments: --nthreads 8
[2025-12-03 16:32:36] Threads: 8
[2025-12-03 16:32:36] Checking for CVMFS
[2025-12-03 16:32:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 16:32:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 16:32:38] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 16:32:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 16:32:39] 2.11.2.0 30898 295461 139308 153601 3 118 24029422 25165825 2021 130560 12 132700809 99.873 82331330 2939 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-03 16:32:39] CVMFS is ok
[2025-12-03 16:32:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 16:32:39] Checking for apptainer binary...
[2025-12-03 16:32:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-03 16:32:39] Running /usr/bin/apptainer --version
[2025-12-03 16:32:39] apptainer version 1.3.2-1.el7
[2025-12-03 16:32:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 16:32:44] cg-vwn285.simple-grid.lan
[2025-12-03 16:32:44] apptainer works
[2025-12-03 16:32:44] Set ATHENA_PROC_NUMBER=8
[2025-12-03 16:32:44] Set ATHENA_CORE_NUMBER=8
[2025-12-03 16:32:44] Starting ATLAS job with PandaID=6901172484
[2025-12-03 16:32:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/18 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-04 13:01:48]  *** The last 200 lines of the pilot log: ***
[2025-12-04 13:01:48] 2025-12-04 12:01:03,303 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-04 13:01:48] 2025-12-04 12:01:03,304 | INFO     | using path: /var/lib/boinc/slots/18/PanDA_Pilot-6901172484/memory_monitor_summary.json (trf name=prmon)
[2025-12-04 13:01:48] 2025-12-04 12:01:03,305 | INFO     | extracted standard info from prmon json
[2025-12-04 13:01:48] 2025-12-04 12:01:03,305 | INFO     | extracted standard memory fields from prmon json
[2025-12-04 13:01:48] 2025-12-04 12:01:03,305 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-04 13:01:48] 2025-12-04 12:01:03,332 | INFO     | fitting pss+swap vs Time
[2025-12-04 13:01:48] 2025-12-04 12:01:03,334 | INFO     | sum of square deviations: 525180290788.57404
[2025-12-04 13:01:48] 2025-12-04 12:01:03,384 | INFO     | sum of deviations: 3800754300615.5923
[2025-12-04 13:01:48] 2025-12-04 12:01:03,384 | INFO     | mean x: 1764813205.588926
[2025-12-04 13:01:48] 2025-12-04 12:01:03,384 | INFO     | mean y: 3362798.0746644298
[2025-12-04 13:01:48] 2025-12-04 12:01:03,384 | INFO     | intersect: -12768672822.02373
[2025-12-04 13:01:48] 2025-12-04 12:01:03,386 | INFO     | chi2: 12.588142316013096
[2025-12-04 13:01:48] 2025-12-04 12:01:03,388 | INFO     | sum of square deviations: 518599577232.61993
[2025-12-04 13:01:48] 2025-12-04 12:01:03,434 | INFO     | sum of deviations: 4230487416426.2896
[2025-12-04 13:01:48] 2025-12-04 12:01:03,435 | INFO     | mean x: 1764813053.093513
[2025-12-04 13:01:48] 2025-12-04 12:01:03,435 | INFO     | mean y: 3372753.0244313395
[2025-12-04 13:01:48] 2025-12-04 12:01:03,435 | INFO     | intersect: -14393128403.605042
[2025-12-04 13:01:48] 2025-12-04 12:01:03,436 | INFO     | chi2: 9.88602666524133
[2025-12-04 13:01:48] 2025-12-04 12:01:03,436 | INFO     | current chi2=9.88602666524133 (change=21.465563249427717 %)
[2025-12-04 13:01:48] 2025-12-04 12:01:03,437 | INFO     | right removable region: 1186
[2025-12-04 13:01:48] 2025-12-04 12:01:03,438 | INFO     | sum of square deviations: 518598785452.6204
[2025-12-04 13:01:48] 2025-12-04 12:01:03,474 | INFO     | monitor loop #5043: job 0:6901172484 is in state 'finished'
[2025-12-04 13:01:48] 2025-12-04 12:01:03,475 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-04 13:01:48] 2025-12-04 12:01:03,488 | INFO     | sum of deviations: 3199668121387.1943
[2025-12-04 13:01:48] 2025-12-04 12:01:03,488 | INFO     | mean x: 1764813358.093513
[2025-12-04 13:01:48] 2025-12-04 12:01:03,488 | INFO     | mean y: 3376725.583824768
[2025-12-04 13:01:48] 2025-12-04 12:01:03,489 | INFO     | intersect: -10885227722.576794
[2025-12-04 13:01:48] 2025-12-04 12:01:03,490 | INFO     | chi2: 7.615514480703997
[2025-12-04 13:01:48] 2025-12-04 12:01:03,490 | INFO     | current chi2=7.615514480703997 (change=39.50247550810996 %)
[2025-12-04 13:01:48] 2025-12-04 12:01:03,492 | INFO     | sum of square deviations: 512072490454.1167
[2025-12-04 13:01:48] 2025-12-04 12:01:03,535 | INFO     | sum of deviations: 2688246168378.643
[2025-12-04 13:01:48] 2025-12-04 12:01:03,536 | INFO     | mean x: 1764813510.5981388
[2025-12-04 13:01:48] 2025-12-04 12:01:03,536 | INFO     | mean y: 3388675.839255499
[2025-12-04 13:01:48] 2025-12-04 12:01:03,536 | INFO     | intersect: -9261419034.414822
[2025-12-04 13:01:48] 2025-12-04 12:01:03,537 | INFO     | chi2: 4.164903118300313
[2025-12-04 13:01:48] 2025-12-04 12:01:03,537 | INFO     | current chi2=4.164903118300313 (change=45.31028561690425 %)
[2025-12-04 13:01:48] 2025-12-04 12:01:03,539 | INFO     | sum of square deviations: 505601389050.1701
[2025-12-04 13:01:48] 2025-12-04 12:01:03,575 | INFO     | sum of deviations: 2439084233208.339
[2025-12-04 13:01:48] 2025-12-04 12:01:03,575 | INFO     | mean x: 1764813663.1002548
[2025-12-04 13:01:48] 2025-12-04 12:01:03,575 | INFO     | mean y: 3394540.192013594
[2025-12-04 13:01:48] 2025-12-04 12:01:03,576 | INFO     | intersect: -8510286935.851859
[2025-12-04 13:01:48] 2025-12-04 12:01:03,577 | INFO     | chi2: 3.1816486199716625
[2025-12-04 13:01:48] 2025-12-04 12:01:03,577 | INFO     | current chi2=3.1816486199716625 (change=23.608100126226095 %)
[2025-12-04 13:01:48] 2025-12-04 12:01:03,577 | INFO     | left removable region: 30
[2025-12-04 13:01:48] 2025-12-04 12:01:03,579 | INFO     | sum of square deviations: 479018989173.6993
[2025-12-04 13:01:48] 2025-12-04 12:01:03,625 | INFO     | sum of deviations: 2640514104479.114
[2025-12-04 13:01:48] 2025-12-04 12:01:03,625 | INFO     | mean x: 1764813937.6072664
[2025-12-04 13:01:48] 2025-12-04 12:01:03,626 | INFO     | mean y: 3411807.462802768
[2025-12-04 13:01:48] 2025-12-04 12:01:03,626 | INFO     | intersect: -9724837383.809904
[2025-12-04 13:01:48] 2025-12-04 12:01:03,627 | INFO     | chi2: 0.19028364905967582
[2025-12-04 13:01:48] 2025-12-04 12:01:03,627 | INFO     | current memory leak: 5.51 B/s (using 1156 data points, chi2=0.19)
[2025-12-04 13:01:48] 2025-12-04 12:01:03,628 | INFO     | could have reported an average CPU frequency of 1999 MHz (41 samples)
[2025-12-04 13:01:48] 2025-12-04 12:01:03,629 | INFO     | ..............................
[2025-12-04 13:01:48] 2025-12-04 12:01:03,629 | INFO     | . Timing measurements:
[2025-12-04 13:01:48] 2025-12-04 12:01:03,629 | INFO     | . get job = 0 s
[2025-12-04 13:01:48] 2025-12-04 12:01:03,629 | INFO     | . initial setup = 9 s
[2025-12-04 13:01:48] 2025-12-04 12:01:03,629 | INFO     | . payload setup = 325 s
[2025-12-04 13:01:48] 2025-12-04 12:01:03,629 | INFO     | . stage-in = 0 s
[2025-12-04 13:01:48] 2025-12-04 12:01:03,629 | INFO     | . payload execution = 72871 s
[2025-12-04 13:01:48] 2025-12-04 12:01:03,629 | INFO     | . stage-out = 3 s
[2025-12-04 13:01:48] 2025-12-04 12:01:03,629 | INFO     | . log creation = 1 s
[2025-12-04 13:01:48] 2025-12-04 12:01:03,629 | INFO     | ..............................
[2025-12-04 13:01:48] 2025-12-04 12:01:04,190 | INFO     | 
[2025-12-04 13:01:48] 2025-12-04 12:01:04,190 | INFO     | job summary report
[2025-12-04 13:01:48] 2025-12-04 12:01:04,190 | INFO     | --------------------------------------------------
[2025-12-04 13:01:48] 2025-12-04 12:01:04,191 | INFO     | PanDA job id: 6901172484
[2025-12-04 13:01:48] 2025-12-04 12:01:04,191 | INFO     | task id: 47531058
[2025-12-04 13:01:48] 2025-12-04 12:01:04,191 | INFO     | errors: (none)
[2025-12-04 13:01:48] 2025-12-04 12:01:04,191 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-04 13:01:48] 2025-12-04 12:01:04,191 | INFO     | pilot state: finished 
[2025-12-04 13:01:48] 2025-12-04 12:01:04,191 | INFO     | transexitcode: 0
[2025-12-04 13:01:48] 2025-12-04 12:01:04,191 | INFO     | exeerrorcode: 0
[2025-12-04 13:01:48] 2025-12-04 12:01:04,191 | INFO     | exeerrordiag: 
[2025-12-04 13:01:48] 2025-12-04 12:01:04,191 | INFO     | exitcode: 0
[2025-12-04 13:01:48] 2025-12-04 12:01:04,191 | INFO     | exitmsg: OK
[2025-12-04 13:01:48] 2025-12-04 12:01:04,191 | INFO     | cpuconsumptiontime: 272709 s
[2025-12-04 13:01:48] 2025-12-04 12:01:04,191 | INFO     | nevents: 1000
[2025-12-04 13:01:48] 2025-12-04 12:01:04,192 | INFO     | neventsw: 0
[2025-12-04 13:01:48] 2025-12-04 12:01:04,192 | INFO     | pid: 16392
[2025-12-04 13:01:48] 2025-12-04 12:01:04,192 | INFO     | pgrp: 16392
[2025-12-04 13:01:48] 2025-12-04 12:01:04,192 | INFO     | corecount: 8
[2025-12-04 13:01:48] 2025-12-04 12:01:04,192 | INFO     | event service: False
[2025-12-04 13:01:48] 2025-12-04 12:01:04,192 | INFO     | sizes: {0: 2283625, 1: 2284482, 2: 2284510, 13: 2284510, 24: 2284566, 34: 2284594, 45: 2284750, 56: 2284778, 66: 2284806, 77: 2284834, 88: 2284890, 99: 2285488, 10
[2025-12-04 13:01:48] 2025-12-04 12:01:04,192 | INFO     | --------------------------------------------------
[2025-12-04 13:01:48] 2025-12-04 12:01:04,192 | INFO     | 
[2025-12-04 13:01:48] 2025-12-04 12:01:04,192 | INFO     | executing command: ls -lF /var/lib/boinc/slots/18
[2025-12-04 13:01:48] 2025-12-04 12:01:04,233 | INFO     | time since job start (73472s) is within the limit (172800.0s)
[2025-12-04 13:01:48] 2025-12-04 12:01:04,559 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-04 13:01:48] 2025-12-04 12:01:04,560 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-04 13:01:48] 2025-12-04 12:01:04,560 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-04 13:01:48] 2025-12-04 12:01:04,560 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-04 13:01:48] 2025-12-04 12:01:04,560 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-04 13:01:48] 2025-12-04 12:01:04,560 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-04 13:01:48] 2025-12-04 12:01:04,560 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-04 13:01:48] 2025-12-04 12:01:04,560 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-04 13:01:48] 2025-12-04 12:01:04,560 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-04 13:01:48] 2025-12-04 12:01:04,560 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-04 13:01:48] 2025-12-04 12:01:04,561 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-04 13:01:48] 2025-12-04 12:01:04,561 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-04 13:01:48] 2025-12-04 12:01:04,561 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-04 13:01:48] 2025-12-04 12:01:04,561 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-04 13:01:48] 2025-12-04 12:01:04,561 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-04 13:01:48] 2025-12-04 12:01:04,561 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-04 13:01:48] 2025-12-04 12:01:04,561 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-04 13:01:48] 2025-12-04 12:01:04,561 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-04 13:01:48] 2025-12-04 12:01:04,561 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-04 13:01:48] 2025-12-04 12:01:04,561 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-04 13:01:48] 2025-12-04 12:01:04,561 | INFO     | job 6901172484 has completed (purged errors)
[2025-12-04 13:01:48] 2025-12-04 12:01:04,562 | INFO     | overall cleanup function is called
[2025-12-04 13:01:48] 2025-12-04 12:01:05,597 | INFO     | --- collectZombieJob: --- 10, [16392]
[2025-12-04 13:01:48] 2025-12-04 12:01:05,597 | INFO     | zombie collector waiting for pid 16392
[2025-12-04 13:01:48] 2025-12-04 12:01:05,598 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-04 13:01:48] 2025-12-04 12:01:05,598 | INFO     | collected zombie processes
[2025-12-04 13:01:48] 2025-12-04 12:01:05,598 | INFO     | will attempt to kill all subprocesses of pid=16392
[2025-12-04 13:01:48] 2025-12-04 12:01:05,728 | INFO     | process IDs to be killed: [16392] (in reverse order)
[2025-12-04 13:01:48] 2025-12-04 12:01:06,308 | WARNING  | found no corresponding commands to process id(s)
[2025-12-04 13:01:48] 2025-12-04 12:01:06,308 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-04 13:01:48] 2025-12-04 12:01:06,311 | INFO     | did not find any defunct processes belonging to 16392
[2025-12-04 13:01:48] 2025-12-04 12:01:06,313 | INFO     | did not find any defunct processes belonging to 16392
[2025-12-04 13:01:48] 2025-12-04 12:01:06,340 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-04 13:01:48] 2025-12-04 12:01:06,341 | INFO     | ready for new job
[2025-12-04 13:01:48] 2025-12-04 12:01:06,341 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-04 13:01:48] 2025-12-04 12:01:06,346 | INFO     | ***************************************
[2025-12-04 13:01:48] 2025-12-04 12:01:06,346 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-04 13:01:48] 2025-12-04 12:01:06,346 | INFO     | ***************************************
[2025-12-04 13:01:48] 2025-12-04 12:01:06,346 | INFO     | 
[2025-12-04 13:01:48] 2025-12-04 12:01:06,347 | INFO     | pilot is running in a VM
[2025-12-04 13:01:48] 2025-12-04 12:01:06,347 | INFO     | architecture information:
[2025-12-04 13:01:48] 2025-12-04 12:01:06,357 | INFO     | executing command: cat /etc/os-release
[2025-12-04 13:01:48] 2025-12-04 12:01:06,622 | INFO     | cat /etc/os-release:
[2025-12-04 13:01:48] NAME="CentOS Linux"
[2025-12-04 13:01:48] VERSION="7 (Core)"
[2025-12-04 13:01:48] ID="centos"
[2025-12-04 13:01:48] ID_LIKE="rhel fedora"
[2025-12-04 13:01:48] VERSION_ID="7"
[2025-12-04 13:01:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-04 13:01:48] ANSI_COLOR="0;31"
[2025-12-04 13:01:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-04 13:01:48] HOME_URL="https://www.centos.org/"
[2025-12-04 13:01:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-04 13:01:48] 
[2025-12-04 13:01:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-04 13:01:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-04 13:01:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-04 13:01:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-04 13:01:48] 
[2025-12-04 13:01:48] 2025-12-04 12:01:06,622 | INFO     | ***************************************
[2025-12-04 13:01:48] 2025-12-04 12:01:07,125 | INFO     | executing command: df -mP /var/lib/boinc/slots/18
[2025-12-04 13:01:48] 2025-12-04 12:01:07,311 | INFO     | sufficient remaining disk space (496433627136 B)
[2025-12-04 13:01:48] 2025-12-04 12:01:07,311 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-04 13:01:48] 2025-12-04 12:01:07,311 | INFO     | current server update state: UPDATING_FINAL
[2025-12-04 13:01:48] 2025-12-04 12:01:07,312 | INFO     | update_server=False
[2025-12-04 13:01:48] 2025-12-04 12:01:07,312 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-04 13:01:48] 2025-12-04 12:01:07,312 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-04 13:01:48] 2025-12-04 12:01:07,313 | INFO     | aborting loop
[2025-12-04 13:01:48] 2025-12-04 12:01:07,458 | INFO     | all data control threads have been joined
[2025-12-04 13:01:48] 2025-12-04 12:01:07,931 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-04 13:01:48] 2025-12-04 12:01:08,024 | INFO     | all payload control threads have been joined
[2025-12-04 13:01:48] 2025-12-04 12:01:08,080 | INFO     | all job control threads have been joined
[2025-12-04 13:01:48] 2025-12-04 12:01:08,317 | INFO     | [job] retrieve thread has finished
[2025-12-04 13:01:48] 2025-12-04 12:01:08,318 | INFO     | [job] job monitor thread has finished
[2025-12-04 13:01:48] 2025-12-04 12:01:08,464 | INFO     | [data] control thread has finished
[2025-12-04 13:01:48] 2025-12-04 12:01:08,495 | INFO     | [data] copytool_in thread has finished
[2025-12-04 13:01:48] 2025-12-04 12:01:08,753 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-04 13:01:48] 2025-12-04 12:01:08,786 | INFO     | [payload] failed_post thread has finished
[2025-12-04 13:01:48] 2025-12-04 12:01:08,904 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-04 13:01:48] 2025-12-04 12:01:09,030 | INFO     | [payload] control thread has finished
[2025-12-04 13:01:48] 2025-12-04 12:01:09,086 | INFO     | [job] control thread has finished
[2025-12-04 13:01:48] 2025-12-04 12:01:09,141 | INFO     | [payload] execute_payloads thread has finished
[2025-12-04 13:01:48] 2025-12-04 12:01:09,281 | INFO     | [job] create_data_payload thread has finished
[2025-12-04 13:01:48] 2025-12-04 12:01:09,490 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-04 13:01:48] 2025-12-04 12:01:09,719 | INFO     | [payload] validate_pre thread has finished
[2025-12-04 13:01:48] 2025-12-04 12:01:09,759 | INFO     | [job] queue monitor thread has finished
[2025-12-04 13:01:48] 2025-12-04 12:01:09,805 | INFO     | [job] validate thread has finished
[2025-12-04 13:01:48] 2025-12-04 12:01:09,915 | INFO     | [payload] validate_post thread has finished
[2025-12-04 13:01:48] 2025-12-04 12:01:09,937 | INFO     | [data] copytool_out thread has finished
[2025-12-04 13:01:48] 2025-12-04 12:01:12,913 | INFO     | [data] queue_monitor thread has finished
[2025-12-04 13:01:48] 2025-12-04 12:01:37,465 | INFO     | PID=9137 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-04 13:01:48] 2025-12-04 12:01:37,465 | INFO     | .. there are 9 such processes running
[2025-12-04 13:01:48] 2025-12-04 12:01:37,467 | INFO     | found 0 job(s) in 20 queues
[2025-12-04 13:01:48] 2025-12-04 12:01:37,467 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-04 13:01:48] 2025-12-04 12:01:37,467 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-04 13:01:48] 2025-12-04 12:01:40,002 | INFO     | [monitor] cgroup control has ended
[2025-12-04 13:01:48] 2025-12-04 12:01:41,139 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140572066686784)>', '<ExcThread(monitor, started 140571620386560)>']
[2025-12-04 13:01:48] 2025-12-04 12:01:41,491 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-04 13:01:48] 2025-12-04 12:01:41,492 | INFO     | [monitor] control thread has ended
[2025-12-04 13:01:48] 2025-12-04 12:01:46,165 | INFO     | all workflow threads have been joined
[2025-12-04 13:01:48] 2025-12-04 12:01:46,165 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-04 13:01:48] 2025-12-04 12:01:46,166 | INFO     | traces error code: 0
[2025-12-04 13:01:48] 2025-12-04 12:01:46,166 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-04 13:01:48] 2025-12-04 12:01:46,305 [wrapper] ==== pilot stdout END ====
[2025-12-04 13:01:48] 2025-12-04 12:01:46,333 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-04 13:01:48] 2025-12-04 12:01:46,339 [wrapper] pilotpid: 9137
[2025-12-04 13:01:48] 2025-12-04 12:01:46,349 [wrapper] Pilot exit status: 0
[2025-12-04 13:01:48] 2025-12-04 12:01:46,585 [wrapper] pandaids: 6901172484
[2025-12-04 13:01:48] 2025-12-04 12:01:46,966 [wrapper] cleanup supervisor_pilot 18069 9138
[2025-12-04 13:01:48] 2025-12-04 12:01:46,980 [wrapper] Test setup, not cleaning
[2025-12-04 13:01:48] 2025-12-04 12:01:46,987 [wrapper] apfmon messages muted
[2025-12-04 13:01:48] 2025-12-04 12:01:46,990 [wrapper] ==== wrapper stdout END ====
[2025-12-04 13:01:48] 2025-12-04 12:01:46,993 [wrapper] ==== wrapper stderr END ====
[2025-12-04 13:01:48]  *** Error codes and diagnostics ***
[2025-12-04 13:01:48]     "exeErrorCode": 0,
[2025-12-04 13:01:48]     "exeErrorDiag": "",
[2025-12-04 13:01:48]     "pilotErrorCode": 0,
[2025-12-04 13:01:48]     "pilotErrorDiag": "",
[2025-12-04 13:01:48]  *** Listing of results directory ***
[2025-12-04 13:01:48] total 1088984
[2025-12-04 13:01:48] -rw-r--r--. 1 boinc boinc    576529 Nov 29 10:19 pilot3.tar.gz
[2025-12-04 13:01:48] -rw-r--r--. 1 boinc boinc      5112 Nov 29 10:19 queuedata.json
[2025-12-04 13:01:48] -rwx------. 1 boinc boinc     36292 Nov 29 10:19 runpilot2-wrapper.sh
[2025-12-04 13:01:48] -rw-r--r--. 1 boinc boinc       100 Dec  3 16:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-04 13:01:48] -rwxr-xr-x. 1 boinc boinc      7986 Dec  3 16:32 run_atlas
[2025-12-04 13:01:48] -rw-r--r--. 1 boinc boinc       105 Dec  3 16:32 job.xml
[2025-12-04 13:01:48] -rw-r--r--. 1 boinc boinc      6389 Dec  3 16:32 init_data.xml
[2025-12-04 13:01:48] -rw-r--r--. 2 boinc boinc 375677429 Dec  3 16:32 EVNT.47531050._000558.pool.root.1
[2025-12-04 13:01:48] -rw-r--r--. 2 boinc boinc     15847 Dec  3 16:32 start_atlas.sh
[2025-12-04 13:01:48] drwxrwx--x. 2 boinc boinc        68 Dec  3 16:32 shared
[2025-12-04 13:01:48] -rw-r--r--. 2 boinc boinc    590121 Dec  3 16:32 input.tar.gz
[2025-12-04 13:01:48] -rw-r--r--. 1 boinc boinc         0 Dec  3 16:32 boinc_lockfile
[2025-12-04 13:01:48] -rw-r--r--. 1 boinc boinc      2880 Dec  3 16:32 pandaJob.out
[2025-12-04 13:01:48] -rw-------. 1 boinc boinc    985783 Dec  3 16:36 agis_schedconf.cvmfs.json
[2025-12-04 13:01:48] drwx------. 5 boinc boinc      4096 Dec  3 16:36 pilot3
[2025-12-04 13:01:48] -rw-r--r--. 1 boinc boinc       533 Dec  4 12:51 boinc_task_state.xml
[2025-12-04 13:01:48] -rw-------. 1 boinc boinc 710944134 Dec  4 12:59 HITS.47531058._001737.pool.root.1
[2025-12-04 13:01:48] -rw-------. 1 boinc boinc      1032 Dec  4 12:59 memory_monitor_summary.json
[2025-12-04 13:01:48] -rw-------. 1 boinc boinc   1516240 Dec  4 12:59 agis_ddmendpoints.agis.ALL.json
[2025-12-04 13:01:48] -rw-------. 1 boinc boinc   2430946 Dec  4 12:59 log.47531058._001737.job.log.tgz.1
[2025-12-04 13:01:48] -rw-------. 1 boinc boinc     28848 Dec  4 13:01 heartbeat.json
[2025-12-04 13:01:48] -rw-------. 1 boinc boinc        95 Dec  4 13:01 pilot_heartbeat.json
[2025-12-04 13:01:48] -rw-r--r--. 1 boinc boinc      8192 Dec  4 13:01 boinc_mmap_file
[2025-12-04 13:01:48] -rw-------. 1 boinc boinc      4884 Dec  4 13:01 pilotlog.txt
[2025-12-04 13:01:48] -rw-r--r--. 1 boinc boinc        29 Dec  4 13:01 wrapper_checkpoint.txt
[2025-12-04 13:01:48] -rw-------. 1 boinc boinc   9848631 Dec  4 13:01 log.47531058._001737.job.log.1
[2025-12-04 13:01:48] -rw-------. 1 boinc boinc       353 Dec  4 13:01 output.list
[2025-12-04 13:01:48] -rw-r--r--. 1 boinc boinc       620 Dec  4 13:01 runtime_log
[2025-12-04 13:01:48] -rw-------. 1 boinc boinc  12318720 Dec  4 13:01 result.tar.gz
[2025-12-04 13:01:48] -rw-r--r--. 1 boinc boinc      8833 Dec  4 13:01 runtime_log.err
[2025-12-04 13:01:48] -rw-------. 1 boinc boinc       661 Dec  4 13:01 7rMNDmyHWj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm0zOKDm2nr7fm.diag
[2025-12-04 13:01:48] -rw-r--r--. 1 boinc boinc     21035 Dec  4 13:01 stderr.txt
[2025-12-04 13:01:48] HITS file was successfully produced:
[2025-12-04 13:01:48] -rw-------. 1 boinc boinc 710944134 Dec  4 12:59 shared/HITS.pool.root.1
[2025-12-04 13:01:48]  *** Contents of shared directory: ***
[2025-12-04 13:01:48] total 1073788
[2025-12-04 13:01:48] -rw-r--r--. 2 boinc boinc 375677429 Dec  3 16:32 ATLAS.root_0
[2025-12-04 13:01:48] -rw-r--r--. 2 boinc boinc     15847 Dec  3 16:32 start_atlas.sh
[2025-12-04 13:01:48] -rw-r--r--. 2 boinc boinc    590121 Dec  3 16:32 input.tar.gz
[2025-12-04 13:01:48] -rw-------. 1 boinc boinc 710944134 Dec  4 12:59 HITS.pool.root.1
[2025-12-04 13:01:48] -rw-------. 1 boinc boinc  12318720 Dec  4 13:01 result.tar.gz
13:01:49 (5364): run_atlas exited; CPU time 273058.480067
13:01:49 (5364): called boinc_finish(0)

</stderr_txt>
]]>

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