Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:30:34 (969169): wrapper (7.7.26015): starting
18:30:34 (969169): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 18:30:34] Arguments: --nthreads 8
[2025-12-02 18:30:34] Threads: 8
[2025-12-02 18:30:34] Checking for CVMFS
[2025-12-02 18:30:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 18:30:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 18:30:35] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 18:30:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 18:30:36] 2.13.2.0 1657905 39561 225424 153574 3 197 40137721 40960000 41482 16776704 0 457717602 99.692 363412011 48442 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-02 18:30:36] CVMFS is ok
[2025-12-02 18:30:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 18:30:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 18:30:36] Further information can be found at the LHC@home message board.
[2025-12-02 18:30:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 18:30:36] Checking for apptainer binary...
[2025-12-02 18:30:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 18:30:36] Running /usr/bin/apptainer --version
[2025-12-02 18:30:37] apptainer version 1.4.4-1.el9
[2025-12-02 18:30:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 18:30:37] c-208-39.aglt2.org
[2025-12-02 18:30:37] apptainer works
[2025-12-02 18:30:37] Set ATHENA_PROC_NUMBER=8
[2025-12-02 18:30:37] Set ATHENA_CORE_NUMBER=8
[2025-12-02 18:30:37] Starting ATLAS job with PandaID=6895343322
[2025-12-02 18:30:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
23:00:05 (969169): BOINC client no longer exists - exiting
23:00:05 (969169): timer handler: client dead, exiting
23:22:08 (3494049): wrapper (7.7.26015): starting
23:22:08 (3494049): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 23:22:08] Arguments: --nthreads 8
[2025-12-02 23:22:08] Threads: 8
[2025-12-02 23:22:08] This job has been restarted, cleaning up previous attempt
[2025-12-02 23:22:09] Checking for CVMFS
[2025-12-02 23:22:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 23:22:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 23:22:10] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 23:22:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 23:22:11] 2.13.2.0 1657905 39852 249380 153581 0 461 24827615 40960001 29222 16776704 0 460045677 99.693 364320327 48430 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-02 23:22:11] CVMFS is ok
[2025-12-02 23:22:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 23:22:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 23:22:11] Further information can be found at the LHC@home message board.
[2025-12-02 23:22:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 23:22:11] Checking for apptainer binary...
[2025-12-02 23:22:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 23:22:11] Running /usr/bin/apptainer --version
[2025-12-02 23:22:11] apptainer version 1.4.4-1.el9
[2025-12-02 23:22:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 23:22:11] c-208-39.aglt2.org
[2025-12-02 23:22:11] apptainer works
[2025-12-02 23:22:11] Set ATHENA_PROC_NUMBER=8
[2025-12-02 23:22:11] Set ATHENA_CORE_NUMBER=8
[2025-12-02 23:22:11] Starting ATLAS job with PandaID=6895343322
[2025-12-02 23:22:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 08:40:39]  *** The last 200 lines of the pilot log: ***
[2025-12-03 08:40:39] 2025-12-03 13:40:06,587 | INFO     | chi2: 16.63377330424949
[2025-12-03 08:40:39] 2025-12-03 13:40:06,587 | INFO     | sum of square deviations: 48829106353.6501
[2025-12-03 08:40:39] 2025-12-03 13:40:06,591 | INFO     | sum of deviations: 1303546407466.5166
[2025-12-03 08:40:39] 2025-12-03 13:40:06,591 | INFO     | mean x: 1764752393.7166667
[2025-12-03 08:40:39] 2025-12-03 13:40:06,591 | INFO     | mean y: 2820993.598148148
[2025-12-03 08:40:39] 2025-12-03 13:40:06,591 | INFO     | intersect: -47109174590.26806
[2025-12-03 08:40:39] 2025-12-03 13:40:06,591 | INFO     | chi2: 14.733843692831696
[2025-12-03 08:40:39] 2025-12-03 13:40:06,591 | INFO     | current chi2=14.733843692831696 (change=11.42212038523101 %)
[2025-12-03 08:40:39] 2025-12-03 13:40:06,591 | INFO     | right removable region: 539
[2025-12-03 08:40:39] 2025-12-03 13:40:06,592 | INFO     | sum of square deviations: 48828408571.21496
[2025-12-03 08:40:39] 2025-12-03 13:40:06,595 | INFO     | sum of deviations: 942849283838.6082
[2025-12-03 08:40:39] 2025-12-03 13:40:06,595 | INFO     | mean x: 1764752698.7185185
[2025-12-03 08:40:39] 2025-12-03 13:40:06,595 | INFO     | mean y: 2831437.3592592594
[2025-12-03 08:40:39] 2025-12-03 13:40:06,595 | INFO     | intersect: -34073557018.190292
[2025-12-03 08:40:39] 2025-12-03 13:40:06,596 | INFO     | chi2: 11.346469598750074
[2025-12-03 08:40:39] 2025-12-03 13:40:06,596 | INFO     | current chi2=11.346469598750074 (change=31.786556235852085 %)
[2025-12-03 08:40:39] 2025-12-03 13:40:06,596 | INFO     | sum of square deviations: 47484259821.37563
[2025-12-03 08:40:39] 2025-12-03 13:40:06,599 | INFO     | sum of deviations: 743530005187.8379
[2025-12-03 08:40:39] 2025-12-03 13:40:06,599 | INFO     | mean x: 1764752851.2392523
[2025-12-03 08:40:39] 2025-12-03 13:40:06,600 | INFO     | mean y: 2854047.493457944
[2025-12-03 08:40:39] 2025-12-03 13:40:06,600 | INFO     | intersect: -27630443840.546776
[2025-12-03 08:40:39] 2025-12-03 13:40:06,600 | INFO     | chi2: 7.513826367188779
[2025-12-03 08:40:39] 2025-12-03 13:40:06,600 | INFO     | current chi2=7.513826367188779 (change=33.77828846413601 %)
[2025-12-03 08:40:39] 2025-12-03 13:40:06,600 | INFO     | sum of square deviations: 46164995258.56806
[2025-12-03 08:40:39] 2025-12-03 13:40:06,603 | INFO     | sum of deviations: 545727944936.6167
[2025-12-03 08:40:39] 2025-12-03 13:40:06,604 | INFO     | mean x: 1764753003.7603774
[2025-12-03 08:40:39] 2025-12-03 13:40:06,604 | INFO     | mean y: 2876921.1150943395
[2025-12-03 08:40:39] 2025-12-03 13:40:06,604 | INFO     | intersect: -20858709323.370197
[2025-12-03 08:40:39] 2025-12-03 13:40:06,604 | INFO     | chi2: 3.8615978078451003
[2025-12-03 08:40:39] 2025-12-03 13:40:06,604 | INFO     | current chi2=3.8615978078451003 (change=48.606773444914225 %)
[2025-12-03 08:40:39] 2025-12-03 13:40:06,604 | INFO     | sum of square deviations: 44870414897.83994
[2025-12-03 08:40:39] 2025-12-03 13:40:06,607 | INFO     | sum of deviations: 414770031770.2799
[2025-12-03 08:40:39] 2025-12-03 13:40:06,607 | INFO     | mean x: 1764753156.28
[2025-12-03 08:40:39] 2025-12-03 13:40:06,607 | INFO     | mean y: 2892322.6647619046
[2025-12-03 08:40:39] 2025-12-03 13:40:06,608 | INFO     | intersect: -16310010608.219305
[2025-12-03 08:40:39] 2025-12-03 13:40:06,608 | INFO     | chi2: 2.213855723348282
[2025-12-03 08:40:39] 2025-12-03 13:40:06,608 | INFO     | current chi2=2.213855723348282 (change=42.66995597390587 %)
[2025-12-03 08:40:39] 2025-12-03 13:40:06,608 | INFO     | sum of square deviations: 43600445278.73075
[2025-12-03 08:40:39] 2025-12-03 13:40:06,611 | INFO     | sum of deviations: 374102176453.9426
[2025-12-03 08:40:39] 2025-12-03 13:40:06,611 | INFO     | mean x: 1764753308.7884614
[2025-12-03 08:40:39] 2025-12-03 13:40:06,611 | INFO     | mean y: 2897204.3903846154
[2025-12-03 08:40:39] 2025-12-03 13:40:06,611 | INFO     | intersect: -15139105348.600037
[2025-12-03 08:40:39] 2025-12-03 13:40:06,612 | INFO     | chi2: 2.1339195391332426
[2025-12-03 08:40:39] 2025-12-03 13:40:06,612 | INFO     | current chi2=2.1339195391332426 (change=3.6107223868293485 %)
[2025-12-03 08:40:39] 2025-12-03 13:40:06,612 | INFO     | left removable region: 50
[2025-12-03 08:40:39] 2025-12-03 13:40:06,612 | INFO     | sum of square deviations: 36258045383.50112
[2025-12-03 08:40:39] 2025-12-03 13:40:06,615 | INFO     | sum of deviations: 402918838251.2349
[2025-12-03 08:40:39] 2025-12-03 13:40:06,615 | INFO     | mean x: 1764753888.3517382
[2025-12-03 08:40:39] 2025-12-03 13:40:06,615 | INFO     | mean y: 2928260.899795501
[2025-12-03 08:40:39] 2025-12-03 13:40:06,615 | INFO     | intersect: -19607963031.590824
[2025-12-03 08:40:39] 2025-12-03 13:40:06,615 | INFO     | chi2: 0.026830424985014093
[2025-12-03 08:40:39] 2025-12-03 13:40:06,615 | INFO     | current memory leak: 11.11 B/s (using 489 data points, chi2=0.03)
[2025-12-03 08:40:39] 2025-12-03 13:40:06,616 | INFO     | could have reported an average CPU frequency of 3763 MHz (22 samples)
[2025-12-03 08:40:39] 2025-12-03 13:40:06,616 | INFO     | ..............................
[2025-12-03 08:40:39] 2025-12-03 13:40:06,616 | INFO     | . Timing measurements:
[2025-12-03 08:40:39] 2025-12-03 13:40:06,616 | INFO     | . get job = 0 s
[2025-12-03 08:40:39] 2025-12-03 13:40:06,616 | INFO     | . initial setup = 4 s
[2025-12-03 08:40:39] 2025-12-03 13:40:06,616 | INFO     | . payload setup = 46 s
[2025-12-03 08:40:39] 2025-12-03 13:40:06,616 | INFO     | . stage-in = 0 s
[2025-12-03 08:40:39] 2025-12-03 13:40:06,616 | INFO     | . payload execution = 33273 s
[2025-12-03 08:40:39] 2025-12-03 13:40:06,616 | INFO     | . stage-out = 3 s
[2025-12-03 08:40:39] 2025-12-03 13:40:06,616 | INFO     | . log creation = 0 s
[2025-12-03 08:40:39] 2025-12-03 13:40:06,616 | INFO     | ..............................
[2025-12-03 08:40:39] 2025-12-03 13:40:06,663 | INFO     | 
[2025-12-03 08:40:39] 2025-12-03 13:40:06,663 | INFO     | job summary report
[2025-12-03 08:40:39] 2025-12-03 13:40:06,663 | INFO     | --------------------------------------------------
[2025-12-03 08:40:39] 2025-12-03 13:40:06,663 | INFO     | PanDA job id: 6895343322
[2025-12-03 08:40:39] 2025-12-03 13:40:06,663 | INFO     | task id: 47556137
[2025-12-03 08:40:39] 2025-12-03 13:40:06,663 | INFO     | errors: (none)
[2025-12-03 08:40:39] 2025-12-03 13:40:06,663 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 08:40:39] 2025-12-03 13:40:06,663 | INFO     | pilot state: finished 
[2025-12-03 08:40:39] 2025-12-03 13:40:06,663 | INFO     | transexitcode: 0
[2025-12-03 08:40:39] 2025-12-03 13:40:06,663 | INFO     | exeerrorcode: 0
[2025-12-03 08:40:39] 2025-12-03 13:40:06,663 | INFO     | exeerrordiag: 
[2025-12-03 08:40:39] 2025-12-03 13:40:06,664 | INFO     | exitcode: 0
[2025-12-03 08:40:39] 2025-12-03 13:40:06,664 | INFO     | exitmsg: OK
[2025-12-03 08:40:39] 2025-12-03 13:40:06,664 | INFO     | cpuconsumptiontime: 138795 s
[2025-12-03 08:40:39] 2025-12-03 13:40:06,664 | INFO     | nevents: 1000
[2025-12-03 08:40:39] 2025-12-03 13:40:06,664 | INFO     | neventsw: 0
[2025-12-03 08:40:39] 2025-12-03 13:40:06,664 | INFO     | pid: 3525598
[2025-12-03 08:40:39] 2025-12-03 13:40:06,664 | INFO     | pgrp: 3525598
[2025-12-03 08:40:39] 2025-12-03 13:40:06,664 | INFO     | corecount: 8
[2025-12-03 08:40:39] 2025-12-03 13:40:06,664 | INFO     | event service: False
[2025-12-03 08:40:39] 2025-12-03 13:40:06,664 | INFO     | sizes: {0: 2284263, 1: 2284263, 12: 2284291, 22: 2284319, 32: 2284609, 33: 2284637, 33324: 2325368, 33328: 2334362, 33330: 2334418, 33341: 2334664}
[2025-12-03 08:40:39] 2025-12-03 13:40:06,664 | INFO     | --------------------------------------------------
[2025-12-03 08:40:39] 2025-12-03 13:40:06,664 | INFO     | 
[2025-12-03 08:40:39] 2025-12-03 13:40:06,664 | INFO     | executing command: ls -lF /tmp/boinchome/slots/8
[2025-12-03 08:40:39] 2025-12-03 13:40:06,681 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 08:40:39] 2025-12-03 13:40:06,682 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 08:40:39] 2025-12-03 13:40:06,682 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 08:40:39] 2025-12-03 13:40:06,682 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 08:40:39] 2025-12-03 13:40:06,682 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 08:40:39] 2025-12-03 13:40:06,682 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 08:40:39] 2025-12-03 13:40:06,682 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 08:40:39] 2025-12-03 13:40:06,682 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 08:40:39] 2025-12-03 13:40:06,682 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 08:40:39] 2025-12-03 13:40:06,682 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 08:40:39] 2025-12-03 13:40:06,682 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 08:40:39] 2025-12-03 13:40:06,682 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 08:40:39] 2025-12-03 13:40:06,682 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 08:40:39] 2025-12-03 13:40:06,682 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 08:40:39] 2025-12-03 13:40:06,682 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 08:40:39] 2025-12-03 13:40:06,682 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 08:40:39] 2025-12-03 13:40:06,682 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 08:40:39] 2025-12-03 13:40:06,682 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 08:40:39] 2025-12-03 13:40:06,682 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 08:40:39] 2025-12-03 13:40:06,682 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 08:40:39] 2025-12-03 13:40:06,682 | INFO     | job 6895343322 has completed (purged errors)
[2025-12-03 08:40:39] 2025-12-03 13:40:06,682 | INFO     | overall cleanup function is called
[2025-12-03 08:40:39] 2025-12-03 13:40:07,711 | INFO     | --- collectZombieJob: --- 10, [3525598]
[2025-12-03 08:40:39] 2025-12-03 13:40:07,711 | INFO     | zombie collector waiting for pid 3525598
[2025-12-03 08:40:39] 2025-12-03 13:40:07,711 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 08:40:39] 2025-12-03 13:40:07,711 | INFO     | collected zombie processes
[2025-12-03 08:40:39] 2025-12-03 13:40:07,711 | INFO     | will attempt to kill all subprocesses of pid=3525598
[2025-12-03 08:40:39] 2025-12-03 13:40:08,330 | INFO     | process IDs to be killed: [3525598] (in reverse order)
[2025-12-03 08:40:39] 2025-12-03 13:40:08,494 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 08:40:39] 2025-12-03 13:40:08,494 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 08:40:39] 2025-12-03 13:40:08,518 | INFO     | did not find any defunct processes belonging to 3525598
[2025-12-03 08:40:39] 2025-12-03 13:40:08,542 | INFO     | did not find any defunct processes belonging to 3525598
[2025-12-03 08:40:39] 2025-12-03 13:40:08,543 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 08:40:39] 2025-12-03 13:40:08,543 | INFO     | ready for new job
[2025-12-03 08:40:39] 2025-12-03 13:40:08,543 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 08:40:39] 2025-12-03 13:40:08,545 | INFO     | ***************************************
[2025-12-03 08:40:39] 2025-12-03 13:40:08,546 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 08:40:39] 2025-12-03 13:40:08,546 | INFO     | ***************************************
[2025-12-03 08:40:39] 2025-12-03 13:40:08,546 | INFO     | 
[2025-12-03 08:40:39] 2025-12-03 13:40:08,550 | INFO     | architecture information:
[2025-12-03 08:40:39] 2025-12-03 13:40:08,551 | INFO     | executing command: cat /etc/os-release
[2025-12-03 08:40:39] 2025-12-03 13:40:08,565 | INFO     | cat /etc/os-release:
[2025-12-03 08:40:39] NAME="CentOS Linux"
[2025-12-03 08:40:39] VERSION="7 (Core)"
[2025-12-03 08:40:39] ID="centos"
[2025-12-03 08:40:39] ID_LIKE="rhel fedora"
[2025-12-03 08:40:39] VERSION_ID="7"
[2025-12-03 08:40:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 08:40:39] ANSI_COLOR="0;31"
[2025-12-03 08:40:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 08:40:39] HOME_URL="https://www.centos.org/"
[2025-12-03 08:40:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 08:40:39] 
[2025-12-03 08:40:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 08:40:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 08:40:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 08:40:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 08:40:39] 
[2025-12-03 08:40:39] 2025-12-03 13:40:08,565 | INFO     | ***************************************
[2025-12-03 08:40:39] 2025-12-03 13:40:09,069 | INFO     | executing command: df -mP /tmp/boinchome/slots/8
[2025-12-03 08:40:39] 2025-12-03 13:40:09,084 | INFO     | sufficient remaining disk space (164679909376 B)
[2025-12-03 08:40:39] 2025-12-03 13:40:09,085 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 08:40:39] 2025-12-03 13:40:09,085 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 08:40:39] 2025-12-03 13:40:09,085 | INFO     | update_server=False
[2025-12-03 08:40:39] 2025-12-03 13:40:09,085 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 08:40:39] 2025-12-03 13:40:09,375 | INFO     | all payload control threads have been joined
[2025-12-03 08:40:39] 2025-12-03 13:40:09,443 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 08:40:39] 2025-12-03 13:40:09,443 | INFO     | aborting loop
[2025-12-03 08:40:39] 2025-12-03 13:40:09,733 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 08:40:39] 2025-12-03 13:40:09,913 | INFO     | all data control threads have been joined
[2025-12-03 08:40:39] 2025-12-03 13:40:10,091 | INFO     | [job] retrieve thread has finished
[2025-12-03 08:40:39] 2025-12-03 13:40:10,211 | INFO     | [payload] failed_post thread has finished
[2025-12-03 08:40:39] 2025-12-03 13:40:10,271 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 08:40:39] 2025-12-03 13:40:10,271 | INFO     | [job] validate thread has finished
[2025-12-03 08:40:39] 2025-12-03 13:40:10,305 | INFO     | [payload] validate_post thread has finished
[2025-12-03 08:40:39] 2025-12-03 13:40:10,379 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 08:40:39] 2025-12-03 13:40:10,380 | INFO     | [payload] control thread has finished
[2025-12-03 08:40:39] 2025-12-03 13:40:10,449 | INFO     | [job] job monitor thread has finished
[2025-12-03 08:40:39] 2025-12-03 13:40:10,522 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 08:40:39] 2025-12-03 13:40:10,653 | INFO     | all job control threads have been joined
[2025-12-03 08:40:39] 2025-12-03 13:40:10,764 | INFO     | [data] copytool_in thread has finished
[2025-12-03 08:40:39] 2025-12-03 13:40:10,919 | INFO     | [data] control thread has finished
[2025-12-03 08:40:39] 2025-12-03 13:40:11,268 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 08:40:39] 2025-12-03 13:40:11,293 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 08:40:39] 2025-12-03 13:40:11,658 | INFO     | [job] control thread has finished
[2025-12-03 08:40:39] 2025-12-03 13:40:11,676 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 08:40:39] 2025-12-03 13:40:11,738 | INFO     | [data] copytool_out thread has finished
[2025-12-03 08:40:39] 2025-12-03 13:40:12,682 | INFO     | [job] queue monitor thread has finished
[2025-12-03 08:40:39] 2025-12-03 13:40:15,279 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 08:40:39] 2025-12-03 13:40:17,358 | INFO     | [monitor] cgroup control has ended
[2025-12-03 08:40:39] 2025-12-03 13:40:17,958 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139821543950144)>', '<ExcThread(monitor, started 139820781270784)>']
[2025-12-03 08:40:39] 2025-12-03 13:40:22,985 | INFO     | all workflow threads have been joined
[2025-12-03 08:40:39] 2025-12-03 13:40:22,985 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 08:40:39] 2025-12-03 13:40:22,985 | INFO     | traces error code: 0
[2025-12-03 08:40:39] 2025-12-03 13:40:22,985 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 08:40:39] 2025-12-03 13:40:38,861 | INFO     | PID=3504664 has CPU usage=6.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-03 08:40:39] 2025-12-03 13:40:38,863 | INFO     | .. there are 36 such processes running
[2025-12-03 08:40:39] 2025-12-03 13:40:38,864 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 08:40:39] 2025-12-03 13:40:38,864 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 08:40:39] 2025-12-03 13:40:38,864 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 08:40:39] 2025-12-03 13:40:38,864 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 08:40:39] 2025-12-03 13:40:38,864 | CRITICAL | thread 'MainThread' is not alive
[2025-12-03 08:40:39] 2025-12-03 13:40:38,864 | INFO     | [monitor] control thread has ended
[2025-12-03 08:40:39] 2025-12-03 13:40:39,022 [wrapper] ==== pilot stdout END ====
[2025-12-03 08:40:39] 2025-12-03 13:40:39,024 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 08:40:39] 2025-12-03 13:40:39,027 [wrapper] pilotpid: 3504664
[2025-12-03 08:40:39] 2025-12-03 13:40:39,029 [wrapper] Pilot exit status: 0
[2025-12-03 08:40:39] 2025-12-03 13:40:39,046 [wrapper] pandaids: 6895343322 6895343322
[2025-12-03 08:40:39] 2025-12-03 13:40:39,174 [wrapper] cleanup supervisor_pilot  912370 3504665
[2025-12-03 08:40:39] 2025-12-03 13:40:39,177 [wrapper] Test setup, not cleaning
[2025-12-03 08:40:39] 2025-12-03 13:40:39,179 [wrapper] apfmon messages muted
[2025-12-03 08:40:39] 2025-12-03 13:40:39,181 [wrapper] ==== wrapper stdout END ====
[2025-12-03 08:40:39] 2025-12-03 13:40:39,185 [wrapper] ==== wrapper stderr END ====
[2025-12-03 08:40:39]  *** Error codes and diagnostics ***
[2025-12-03 08:40:39]     "exeErrorCode": 0,
[2025-12-03 08:40:39]     "exeErrorDiag": "",
[2025-12-03 08:40:39]     "pilotErrorCode": 0,
[2025-12-03 08:40:39]     "pilotErrorDiag": "",
[2025-12-03 08:40:39]  *** Listing of results directory ***
[2025-12-03 08:40:39] total 1704768
[2025-12-03 08:40:39] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-12-03 08:40:39] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 10:48 pilot3.tar.gz
[2025-12-03 08:40:39] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 11:03 queuedata.json
[2025-12-03 08:40:39] -rwx------. 1 boincer umatlas     36292 Nov 22 11:03 runpilot2-wrapper.sh
[2025-12-03 08:40:39] -rw-r--r--. 1 boincer umatlas       100 Dec  2 18:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 08:40:39] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  2 18:30 run_atlas
[2025-12-03 08:40:39] -rw-r--r--. 1 boincer umatlas       105 Dec  2 18:30 job.xml
[2025-12-03 08:40:39] -rw-r--r--. 3 boincer umatlas 408344722 Dec  2 18:30 EVNT.47483658._000423.pool.root.1
[2025-12-03 08:40:39] -rw-r--r--. 3 boincer umatlas 408344722 Dec  2 18:30 ATLAS.root_0
[2025-12-03 08:40:39] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 18:30 start_atlas.sh
[2025-12-03 08:40:39] drwxrwx--x. 2 boincer umatlas      4096 Dec  2 18:30 shared
[2025-12-03 08:40:39] -rw-r--r--. 2 boincer umatlas    590101 Dec  2 18:30 input.tar.gz
[2025-12-03 08:40:39] -rw-r--r--. 1 boincer umatlas         0 Dec  2 18:30 boinc_lockfile
[2025-12-03 08:40:39] -rw-r--r--. 1 boincer umatlas      2784 Dec  2 23:22 pandaJob.out
[2025-12-03 08:40:39] -rw-------. 1 boincer umatlas        57 Dec  2 23:22 setup.sh.local
[2025-12-03 08:40:39] -rw-------. 1 boincer umatlas    989297 Dec  2 23:23 agis_schedconf.cvmfs.json
[2025-12-03 08:40:39] -rw-r--r--. 1 boincer umatlas       533 Dec  3 08:33 boinc_task_state.xml
[2025-12-03 08:40:39] -rw-r--r--. 1 boincer umatlas      7176 Dec  3 08:36 init_data.xml
[2025-12-03 08:40:39] -rw-------. 1 boincer umatlas 912965268 Dec  3 08:39 HITS.47556137._004184.pool.root.1
[2025-12-03 08:40:39] -rw-------. 1 boincer umatlas      1071 Dec  3 08:39 memory_monitor_summary.json
[2025-12-03 08:40:39] -rw-------. 1 boincer umatlas   1516240 Dec  3 08:39 agis_ddmendpoints.agis.ALL.json
[2025-12-03 08:40:39] -rw-------. 1 boincer umatlas   1796525 Dec  3 08:39 log.47556137._004184.job.log.tgz.1
[2025-12-03 08:40:39] -rw-------. 1 boincer umatlas      8626 Dec  3 08:40 heartbeat.json
[2025-12-03 08:40:39] -rw-r--r--. 1 boincer umatlas      8192 Dec  3 08:40 boinc_mmap_file
[2025-12-03 08:40:39] -rw-r--r--. 1 boincer umatlas        29 Dec  3 08:40 wrapper_checkpoint.txt
[2025-12-03 08:40:39] -rw-------. 1 boincer umatlas       893 Dec  3 08:40 pilotlog.txt
[2025-12-03 08:40:39] -rw-------. 1 boincer umatlas        97 Dec  3 08:40 pilot_heartbeat.json
[2025-12-03 08:40:39] -rw-------. 1 boincer umatlas   4258023 Dec  3 08:40 log.47556137._004184.job.log.1
[2025-12-03 08:40:39] -rw-------. 1 boincer umatlas       353 Dec  3 08:40 output.list
[2025-12-03 08:40:39] -rw-r--r--. 1 boincer umatlas       620 Dec  3 08:40 runtime_log
[2025-12-03 08:40:39] -rw-------. 1 boincer umatlas   6072320 Dec  3 08:40 result.tar.gz
[2025-12-03 08:40:39] -rw-r--r--. 1 boincer umatlas      9428 Dec  3 08:40 runtime_log.err
[2025-12-03 08:40:39] -rw-------. 1 boincer umatlas       791 Dec  3 08:40 e2CODm9F5g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmQFKKDmpoiZ7m.diag
[2025-12-03 08:40:39] -rw-r--r--. 1 boincer umatlas     23449 Dec  3 08:40 stderr.txt
[2025-12-03 08:40:39] HITS file was successfully produced:
[2025-12-03 08:40:39] -rw-------. 1 boincer umatlas 912965268 Dec  3 08:39 shared/HITS.pool.root.1
[2025-12-03 08:40:39]  *** Contents of shared directory: ***
[2025-12-03 08:40:39] total 1296880
[2025-12-03 08:40:39] -rw-r--r--. 3 boincer umatlas 408344722 Dec  2 18:30 ATLAS.root_0
[2025-12-03 08:40:39] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 18:30 start_atlas.sh
[2025-12-03 08:40:39] -rw-r--r--. 2 boincer umatlas    590101 Dec  2 18:30 input.tar.gz
[2025-12-03 08:40:39] -rw-------. 1 boincer umatlas 912965268 Dec  3 08:39 HITS.pool.root.1
[2025-12-03 08:40:39] -rw-------. 1 boincer umatlas   6072320 Dec  3 08:40 result.tar.gz
08:40:40 (3494049): run_atlas exited; CPU time 139407.458004
08:40:40 (3494049): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN