Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
02:21:51 (31476): wrapper (7.7.26015): starting
02:21:51 (31476): wrapper: running run_atlas (--nthreads 8)
[2025-12-03 02:21:51] Arguments: --nthreads 8
[2025-12-03 02:21:51] Threads: 8
[2025-12-03 02:21:51] Checking for CVMFS
[2025-12-03 02:21:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 02:21:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 02:21:51] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 02:21:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 02:21:52] 2.11.0.0 5503 74909 89656 153576 2 78 3972049 4096000 1633 130560 1 6410896 99.516 7003713 672 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-03 02:21:52] CVMFS is ok
[2025-12-03 02:21:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-03 02:21:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-03 02:21:52] Further information can be found at the LHC@home message board.
[2025-12-03 02:21:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 02:21:52] Checking for apptainer binary...
[2025-12-03 02:21:52] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-03 02:21:52] apptainer is not installed, using version from CVMFS
[2025-12-03 02:21:52] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 02:21:52] WARNING: Environment variable TMPDIR already has value [/tmp/job_10946290/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node266
[2025-12-03 02:21:52] apptainer works
[2025-12-03 02:21:52] Set ATHENA_PROC_NUMBER=8
[2025-12-03 02:21:52] Set ATHENA_CORE_NUMBER=8
[2025-12-03 02:21:52] Starting ATLAS job with PandaID=6900972816
[2025-12-03 02:21:52] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10946290/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 06:44:29]  *** The last 200 lines of the pilot log: ***
[2025-12-03 06:44:29] 2025-12-03 05:43:54,922 | INFO     | monitor loop #1115: job 0:6900972816 is in state 'finished'
[2025-12-03 06:44:29] 2025-12-03 05:43:54,922 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 06:44:29] 2025-12-03 05:43:55,685 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 06:44:29] 2025-12-03 05:43:55,706 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2520.912796875
[2025-12-03 06:44:29] 2025-12-03 05:43:55,716 | INFO     | using path: /tmp/job_10946290/atlas/pilot/slots/0/PanDA_Pilot-6900972816/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 06:44:29] 2025-12-03 05:43:55,717 | INFO     | extracted standard info from prmon json
[2025-12-03 06:44:29] 2025-12-03 05:43:55,717 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 06:44:29] 2025-12-03 05:43:55,717 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 06:44:29] 2025-12-03 05:43:55,719 | INFO     | fitting pss+swap vs Time
[2025-12-03 06:44:29] 2025-12-03 05:43:55,720 | INFO     | sum of square deviations: 5325139844.5
[2025-12-03 06:44:29] 2025-12-03 05:43:55,720 | INFO     | sum of deviations: 433051816283.00006
[2025-12-03 06:44:29] 2025-12-03 05:43:55,721 | INFO     | mean x: 1764732778.5
[2025-12-03 06:44:29] 2025-12-03 05:43:55,721 | INFO     | mean y: 3593461.6279069767
[2025-12-03 06:44:29] 2025-12-03 05:43:55,721 | INFO     | intersect: -143508268630.1978
[2025-12-03 06:44:29] 2025-12-03 05:43:55,721 | INFO     | chi2: 5.662319523665777
[2025-12-03 06:44:29] 2025-12-03 05:43:55,721 | INFO     | sum of square deviations: 5021496942.0
[2025-12-03 06:44:29] 2025-12-03 05:43:55,722 | INFO     | sum of deviations: 503051740179.0
[2025-12-03 06:44:29] 2025-12-03 05:43:55,722 | INFO     | mean x: 1764732626.0
[2025-12-03 06:44:29] 2025-12-03 05:43:55,722 | INFO     | mean y: 3628345.1027667983
[2025-12-03 06:44:29] 2025-12-03 05:43:55,722 | INFO     | intersect: -176786645295.16672
[2025-12-03 06:44:29] 2025-12-03 05:43:55,722 | INFO     | chi2: 3.5461063445908634
[2025-12-03 06:44:29] 2025-12-03 05:43:55,722 | INFO     | current chi2=3.5461063445908634 (change=37.373609352671785 %)
[2025-12-03 06:44:29] 2025-12-03 05:43:55,722 | INFO     | sum of square deviations: 4729621702.0
[2025-12-03 06:44:29] 2025-12-03 05:43:55,723 | INFO     | sum of deviations: 438702907797.49994
[2025-12-03 06:44:29] 2025-12-03 05:43:55,723 | INFO     | mean x: 1764732473.5
[2025-12-03 06:44:29] 2025-12-03 05:43:55,723 | INFO     | mean y: 3594723.3266129033
[2025-12-03 06:44:29] 2025-12-03 05:43:55,724 | INFO     | intersect: -163686720568.00925
[2025-12-03 06:44:29] 2025-12-03 05:43:55,724 | INFO     | chi2: 3.2553564683737917
[2025-12-03 06:44:29] 2025-12-03 05:43:55,724 | INFO     | current chi2=3.2553564683737917 (change=8.199130199819695 %)
[2025-12-03 06:44:29] 2025-12-03 05:43:55,724 | INFO     | right removable region: 247
[2025-12-03 06:44:29] 2025-12-03 05:43:55,724 | INFO     | sum of square deviations: 5021496942.0
[2025-12-03 06:44:29] 2025-12-03 05:43:55,725 | INFO     | sum of deviations: 358345432873.0
[2025-12-03 06:44:29] 2025-12-03 05:43:55,725 | INFO     | mean x: 1764732931.0
[2025-12-03 06:44:29] 2025-12-03 05:43:55,725 | INFO     | mean y: 3630735.7154150195
[2025-12-03 06:44:29] 2025-12-03 05:43:55,725 | INFO     | intersect: -125931721484.68489
[2025-12-03 06:44:29] 2025-12-03 05:43:55,725 | INFO     | chi2: 3.93267932833214
[2025-12-03 06:44:29] 2025-12-03 05:43:55,725 | INFO     | current chi2=3.93267932833214 (change=30.546495797430207 %)
[2025-12-03 06:44:29] 2025-12-03 05:43:55,725 | INFO     | sum of square deviations: 4729621702.0
[2025-12-03 06:44:29] 2025-12-03 05:43:55,726 | INFO     | sum of deviations: 340846403865.0
[2025-12-03 06:44:29] 2025-12-03 05:43:55,726 | INFO     | mean x: 1764733083.5
[2025-12-03 06:44:29] 2025-12-03 05:43:55,726 | INFO     | mean y: 3639871.8225806453
[2025-12-03 06:44:29] 2025-12-03 05:43:55,726 | INFO     | intersect: -127174169092.9435
[2025-12-03 06:44:29] 2025-12-03 05:43:55,727 | INFO     | chi2: 3.9260939999622346
[2025-12-03 06:44:29] 2025-12-03 05:43:55,727 | INFO     | current chi2=3.9260939999622346 (change=0.16745144518808722 %)
[2025-12-03 06:44:29] 2025-12-03 05:43:55,727 | INFO     | left removable region: 20
[2025-12-03 06:44:29] 2025-12-03 05:43:55,727 | INFO     | sum of square deviations: 3627000098.0
[2025-12-03 06:44:29] 2025-12-03 05:43:55,728 | INFO     | sum of deviations: 312709498725.0
[2025-12-03 06:44:29] 2025-12-03 05:43:55,728 | INFO     | mean x: 1764733053.0
[2025-12-03 06:44:29] 2025-12-03 05:43:55,728 | INFO     | mean y: 3651859.9515418503
[2025-12-03 06:44:29] 2025-12-03 05:43:55,728 | INFO     | intersect: -152146547609.67883
[2025-12-03 06:44:29] 2025-12-03 05:43:55,728 | INFO     | chi2: 1.350260751134723
[2025-12-03 06:44:29] 2025-12-03 05:43:55,728 | INFO     | current memory leak: 86.22 B/s (using 227 data points, chi2=1.35)
[2025-12-03 06:44:29] 2025-12-03 05:43:55,728 | INFO     | could have reported an average CPU frequency of 2523 MHz (12 samples)
[2025-12-03 06:44:29] 2025-12-03 05:43:55,728 | INFO     | ..............................
[2025-12-03 06:44:29] 2025-12-03 05:43:55,728 | INFO     | . Timing measurements:
[2025-12-03 06:44:29] 2025-12-03 05:43:55,728 | INFO     | . get job = 0 s
[2025-12-03 06:44:29] 2025-12-03 05:43:55,728 | INFO     | . initial setup = 1 s
[2025-12-03 06:44:29] 2025-12-03 05:43:55,728 | INFO     | . payload setup = 4 s
[2025-12-03 06:44:29] 2025-12-03 05:43:55,728 | INFO     | . stage-in = 0 s
[2025-12-03 06:44:29] 2025-12-03 05:43:55,728 | INFO     | . payload execution = 15692 s
[2025-12-03 06:44:29] 2025-12-03 05:43:55,728 | INFO     | . stage-out = 1 s
[2025-12-03 06:44:29] 2025-12-03 05:43:55,729 | INFO     | . log creation = 0 s
[2025-12-03 06:44:29] 2025-12-03 05:43:55,729 | INFO     | ..............................
[2025-12-03 06:44:29] 2025-12-03 05:43:55,781 | INFO     | 
[2025-12-03 06:44:29] 2025-12-03 05:43:55,781 | INFO     | job summary report
[2025-12-03 06:44:29] 2025-12-03 05:43:55,781 | INFO     | --------------------------------------------------
[2025-12-03 06:44:29] 2025-12-03 05:43:55,781 | INFO     | PanDA job id: 6900972816
[2025-12-03 06:44:29] 2025-12-03 05:43:55,781 | INFO     | task id: 47531058
[2025-12-03 06:44:29] 2025-12-03 05:43:55,781 | INFO     | errors: (none)
[2025-12-03 06:44:29] 2025-12-03 05:43:55,781 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 06:44:29] 2025-12-03 05:43:55,781 | INFO     | pilot state: finished 
[2025-12-03 06:44:29] 2025-12-03 05:43:55,781 | INFO     | transexitcode: 0
[2025-12-03 06:44:29] 2025-12-03 05:43:55,781 | INFO     | exeerrorcode: 0
[2025-12-03 06:44:29] 2025-12-03 05:43:55,781 | INFO     | exeerrordiag: 
[2025-12-03 06:44:29] 2025-12-03 05:43:55,781 | INFO     | exitcode: 0
[2025-12-03 06:44:29] 2025-12-03 05:43:55,781 | INFO     | exitmsg: OK
[2025-12-03 06:44:29] 2025-12-03 05:43:55,781 | INFO     | cpuconsumptiontime: 119256 s
[2025-12-03 06:44:29] 2025-12-03 05:43:55,781 | INFO     | nevents: 1000
[2025-12-03 06:44:29] 2025-12-03 05:43:55,781 | INFO     | neventsw: 0
[2025-12-03 06:44:29] 2025-12-03 05:43:55,781 | INFO     | pid: 14863
[2025-12-03 06:44:29] 2025-12-03 05:43:55,781 | INFO     | pgrp: 14863
[2025-12-03 06:44:29] 2025-12-03 05:43:55,782 | INFO     | corecount: 8
[2025-12-03 06:44:29] 2025-12-03 05:43:55,782 | INFO     | event service: False
[2025-12-03 06:44:29] 2025-12-03 05:43:55,782 | INFO     | sizes: {0: 2284579, 2: 2284841, 11: 2284869, 15701: 2337396, 15702: 2346476, 15705: 2346666}
[2025-12-03 06:44:29] 2025-12-03 05:43:55,782 | INFO     | --------------------------------------------------
[2025-12-03 06:44:29] 2025-12-03 05:43:55,782 | INFO     | 
[2025-12-03 06:44:29] 2025-12-03 05:43:55,782 | INFO     | executing command: ls -lF /tmp/job_10946290/atlas/pilot/slots/0
[2025-12-03 06:44:29] 2025-12-03 05:43:55,793 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 06:44:29] 2025-12-03 05:43:55,793 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 06:44:29] 2025-12-03 05:43:55,793 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 06:44:29] 2025-12-03 05:43:55,793 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 06:44:29] 2025-12-03 05:43:55,793 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 06:44:29] 2025-12-03 05:43:55,793 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 06:44:29] 2025-12-03 05:43:55,793 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 06:44:29] 2025-12-03 05:43:55,793 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 06:44:29] 2025-12-03 05:43:55,793 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 06:44:29] 2025-12-03 05:43:55,793 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 06:44:29] 2025-12-03 05:43:55,794 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 06:44:29] 2025-12-03 05:43:55,794 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 06:44:29] 2025-12-03 05:43:55,794 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 06:44:29] 2025-12-03 05:43:55,794 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 06:44:29] 2025-12-03 05:43:55,794 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 06:44:29] 2025-12-03 05:43:55,794 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 06:44:29] 2025-12-03 05:43:55,794 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 06:44:29] 2025-12-03 05:43:55,794 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 06:44:29] 2025-12-03 05:43:55,794 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 06:44:29] 2025-12-03 05:43:55,794 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 06:44:29] 2025-12-03 05:43:55,794 | INFO     | job 6900972816 has completed (purged errors)
[2025-12-03 06:44:29] 2025-12-03 05:43:55,794 | INFO     | overall cleanup function is called
[2025-12-03 06:44:29] 2025-12-03 05:43:56,801 | INFO     | --- collectZombieJob: --- 10, [14863]
[2025-12-03 06:44:29] 2025-12-03 05:43:56,801 | INFO     | zombie collector waiting for pid 14863
[2025-12-03 06:44:29] 2025-12-03 05:43:56,801 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 06:44:29] 2025-12-03 05:43:56,801 | INFO     | collected zombie processes
[2025-12-03 06:44:29] 2025-12-03 05:43:56,801 | INFO     | will attempt to kill all subprocesses of pid=14863
[2025-12-03 06:44:29] 2025-12-03 05:43:56,972 | INFO     | process IDs to be killed: [14863] (in reverse order)
[2025-12-03 06:44:29] 2025-12-03 05:43:57,028 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 06:44:29] 2025-12-03 05:43:57,028 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 06:44:29] 2025-12-03 05:43:57,035 | INFO     | did not find any defunct processes belonging to 14863
[2025-12-03 06:44:29] 2025-12-03 05:43:57,040 | INFO     | did not find any defunct processes belonging to 14863
[2025-12-03 06:44:29] 2025-12-03 05:43:57,040 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 06:44:29] 2025-12-03 05:43:57,040 | INFO     | ready for new job
[2025-12-03 06:44:29] 2025-12-03 05:43:57,040 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 06:44:29] 2025-12-03 05:43:57,041 | INFO     | ***************************************
[2025-12-03 06:44:29] 2025-12-03 05:43:57,041 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 06:44:29] 2025-12-03 05:43:57,041 | INFO     | ***************************************
[2025-12-03 06:44:29] 2025-12-03 05:43:57,041 | INFO     | 
[2025-12-03 06:44:29] 2025-12-03 05:43:57,056 | INFO     | architecture information:
[2025-12-03 06:44:29] 2025-12-03 05:43:57,056 | INFO     | executing command: cat /etc/os-release
[2025-12-03 06:44:29] 2025-12-03 05:43:57,064 | INFO     | cat /etc/os-release:
[2025-12-03 06:44:29] NAME="CentOS Linux"
[2025-12-03 06:44:29] VERSION="7 (Core)"
[2025-12-03 06:44:29] ID="centos"
[2025-12-03 06:44:29] ID_LIKE="rhel fedora"
[2025-12-03 06:44:29] VERSION_ID="7"
[2025-12-03 06:44:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 06:44:29] ANSI_COLOR="0;31"
[2025-12-03 06:44:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 06:44:29] HOME_URL="https://www.centos.org/"
[2025-12-03 06:44:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 06:44:29] 
[2025-12-03 06:44:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 06:44:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 06:44:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 06:44:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 06:44:29] 
[2025-12-03 06:44:29] 2025-12-03 05:43:57,064 | INFO     | ***************************************
[2025-12-03 06:44:29] 2025-12-03 05:43:57,567 | INFO     | executing command: df -mP /tmp/job_10946290/atlas/pilot/slots/0
[2025-12-03 06:44:29] 2025-12-03 05:43:57,575 | INFO     | sufficient remaining disk space (221520068608 B)
[2025-12-03 06:44:29] 2025-12-03 05:43:57,576 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 06:44:29] 2025-12-03 05:43:57,576 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 06:44:29] 2025-12-03 05:43:57,576 | INFO     | update_server=False
[2025-12-03 06:44:29] 2025-12-03 05:43:57,576 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 06:44:29] 2025-12-03 05:43:57,576 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 06:44:29] 2025-12-03 05:43:57,746 | INFO     | all payload control threads have been joined
[2025-12-03 06:44:29] 2025-12-03 05:43:58,430 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 06:44:29] 2025-12-03 05:43:58,430 | INFO     | aborting loop
[2025-12-03 06:44:29] 2025-12-03 05:43:58,581 | INFO     | [job] retrieve thread has finished
[2025-12-03 06:44:29] 2025-12-03 05:43:58,581 | INFO     | [job] queue monitor thread has finished
[2025-12-03 06:44:29] 2025-12-03 05:43:58,656 | INFO     | all data control threads have been joined
[2025-12-03 06:44:29] 2025-12-03 05:43:58,733 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 06:44:29] 2025-12-03 05:43:58,751 | INFO     | [payload] control thread has finished
[2025-12-03 06:44:29] 2025-12-03 05:43:58,838 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 06:44:29] 2025-12-03 05:43:58,873 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 06:44:29] 2025-12-03 05:43:58,977 | INFO     | [payload] failed_post thread has finished
[2025-12-03 06:44:29] 2025-12-03 05:43:59,080 | INFO     | all job control threads have been joined
[2025-12-03 06:44:29] 2025-12-03 05:43:59,158 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 06:44:29] 2025-12-03 05:43:59,292 | INFO     | [payload] validate_post thread has finished
[2025-12-03 06:44:29] 2025-12-03 05:43:59,298 | INFO     | [data] copytool_in thread has finished
[2025-12-03 06:44:29] 2025-12-03 05:43:59,414 | INFO     | [job] validate thread has finished
[2025-12-03 06:44:29] 2025-12-03 05:43:59,435 | INFO     | [job] job monitor thread has finished
[2025-12-03 06:44:29] 2025-12-03 05:43:59,487 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 06:44:29] 2025-12-03 05:43:59,661 | INFO     | [data] control thread has finished
[2025-12-03 06:44:29] 2025-12-03 05:44:00,085 | INFO     | [job] control thread has finished
[2025-12-03 06:44:29] 2025-12-03 05:44:00,878 | INFO     | [data] copytool_out thread has finished
[2025-12-03 06:44:29] 2025-12-03 05:44:03,493 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 06:44:29] 2025-12-03 05:44:08,000 | INFO     | job.realtimelogging is not enabled
[2025-12-03 06:44:29] 2025-12-03 05:44:09,005 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 06:44:29] 2025-12-03 05:44:23,723 | INFO     | [monitor] cgroup control has ended
[2025-12-03 06:44:29] 2025-12-03 05:44:24,128 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456060819200)>']
[2025-12-03 06:44:29] 2025-12-03 05:44:27,077 | INFO     | PID=4655 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-03 06:44:29] 2025-12-03 05:44:27,077 | INFO     | .. there are 4 such processes running
[2025-12-03 06:44:29] 2025-12-03 05:44:27,077 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 06:44:29] 2025-12-03 05:44:27,077 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 06:44:29] 2025-12-03 05:44:27,077 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 06:44:29] 2025-12-03 05:44:27,077 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 06:44:29] 2025-12-03 05:44:27,077 | INFO     | [monitor] control thread has ended
[2025-12-03 06:44:29] 2025-12-03 05:44:29,153 | INFO     | all workflow threads have been joined
[2025-12-03 06:44:29] 2025-12-03 05:44:29,154 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 06:44:29] 2025-12-03 05:44:29,154 | INFO     | traces error code: 0
[2025-12-03 06:44:29] 2025-12-03 05:44:29,154 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 06:44:29] 2025-12-03 05:44:29,213 [wrapper] ==== pilot stdout END ====
[2025-12-03 06:44:29] 2025-12-03 05:44:29,214 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 06:44:29] 2025-12-03 05:44:29,216 [wrapper] pilotpid: 4655
[2025-12-03 06:44:29] 2025-12-03 05:44:29,217 [wrapper] Pilot exit status: 0
[2025-12-03 06:44:29] 2025-12-03 05:44:29,222 [wrapper] pandaids: 6900972816
[2025-12-03 06:44:29] 2025-12-03 05:44:29,256 [wrapper] cleanup supervisor_pilot  3300 4656
[2025-12-03 06:44:29] 2025-12-03 05:44:29,258 [wrapper] Test setup, not cleaning
[2025-12-03 06:44:29] 2025-12-03 05:44:29,259 [wrapper] apfmon messages muted
[2025-12-03 06:44:29] 2025-12-03 05:44:29,260 [wrapper] ==== wrapper stdout END ====
[2025-12-03 06:44:29] 2025-12-03 05:44:29,262 [wrapper] ==== wrapper stderr END ====
[2025-12-03 06:44:29]  *** Error codes and diagnostics ***
[2025-12-03 06:44:29]     "exeErrorCode": 0,
[2025-12-03 06:44:29]     "exeErrorDiag": "",
[2025-12-03 06:44:29]     "pilotErrorCode": 0,
[2025-12-03 06:44:29]     "pilotErrorDiag": "",
[2025-12-03 06:44:29]  *** Listing of results directory ***
[2025-12-03 06:44:29] total 1062744
[2025-12-03 06:44:29] -rw------- 1 mf493845 unix-user    576529 Nov 29 10:19 pilot3.tar.gz
[2025-12-03 06:44:29] -rwx------ 1 mf493845 unix-user     36292 Nov 29 10:22 runpilot2-wrapper.sh
[2025-12-03 06:44:29] -rw------- 1 mf493845 unix-user      5112 Nov 29 10:26 queuedata.json
[2025-12-03 06:44:29] -rw------- 1 mf493845 unix-user       100 Dec  3 00:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 06:44:29] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  3 00:45 run_atlas
[2025-12-03 06:44:29] -rw------- 1 mf493845 unix-user       105 Dec  3 00:45 job.xml
[2025-12-03 06:44:29] -rw-r--r-- 2 mf493845 unix-user 377745239 Dec  3 02:21 EVNT.47531050._000519.pool.root.1
[2025-12-03 06:44:29] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 02:21 start_atlas.sh
[2025-12-03 06:44:29] drwxrwx--x 2 mf493845 unix-user       100 Dec  3 02:21 shared
[2025-12-03 06:44:29] -rw-r--r-- 2 mf493845 unix-user    590126 Dec  3 02:21 input.tar.gz
[2025-12-03 06:44:29] -rw------- 1 mf493845 unix-user      6389 Dec  3 02:21 init_data.xml
[2025-12-03 06:44:29] -rw------- 1 mf493845 unix-user         0 Dec  3 02:21 boinc_setup_complete
[2025-12-03 06:44:29] -rw------- 1 mf493845 unix-user      8192 Dec  3 02:21 boinc_mmap_file
[2025-12-03 06:44:29] -rw------- 1 mf493845 unix-user         0 Dec  3 02:21 boinc_lockfile
[2025-12-03 06:44:29] -rw------- 1 mf493845 unix-user      2880 Dec  3 02:21 pandaJob.out
[2025-12-03 06:44:29] -rw------- 1 mf493845 unix-user    989300 Dec  3 02:21 agis_schedconf.cvmfs.json
[2025-12-03 06:44:29] drwx------ 5 mf493845 unix-user       440 Dec  3 02:21 pilot3
[2025-12-03 06:44:29] -rw------- 1 mf493845 unix-user 698841060 Dec  3 06:43 HITS.47531058._001346.pool.root.1
[2025-12-03 06:44:29] -rw------- 1 mf493845 unix-user      1027 Dec  3 06:43 memory_monitor_summary.json
[2025-12-03 06:44:29] -rw------- 1 mf493845 unix-user        95 Dec  3 06:43 pilot_heartbeat.json
[2025-12-03 06:44:29] -rw------- 1 mf493845 unix-user   1516240 Dec  3 06:43 agis_ddmendpoints.agis.ALL.json
[2025-12-03 06:44:29] -rw------- 1 mf493845 unix-user   1650209 Dec  3 06:43 log.47531058._001346.job.log.tgz.1
[2025-12-03 06:44:29] -rw------- 1 mf493845 unix-user     29408 Dec  3 06:43 heartbeat.json
[2025-12-03 06:44:29] -rw------- 1 mf493845 unix-user      4906 Dec  3 06:44 pilotlog.txt
[2025-12-03 06:44:29] -rw------- 1 mf493845 unix-user   2218437 Dec  3 06:44 log.47531058._001346.job.log.1
[2025-12-03 06:44:29] -rw------- 1 mf493845 unix-user       353 Dec  3 06:44 output.list
[2025-12-03 06:44:29] -rw------- 1 mf493845 unix-user       620 Dec  3 06:44 runtime_log
[2025-12-03 06:44:29] -rw------- 1 mf493845 unix-user   3911680 Dec  3 06:44 result.tar.gz
[2025-12-03 06:44:29] -rw------- 1 mf493845 unix-user      9221 Dec  3 06:44 runtime_log.err
[2025-12-03 06:44:29] -rw------- 1 mf493845 unix-user       650 Dec  3 06:44 2zKNDm3KWj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmJrLKDmltzMsm.diag
[2025-12-03 06:44:29] -rw------- 1 mf493845 unix-user     21663 Dec  3 06:44 stderr.txt
[2025-12-03 06:44:29] HITS file was successfully produced:
[2025-12-03 06:44:29] -rw------- 1 mf493845 unix-user 698841060 Dec  3 06:43 shared/HITS.pool.root.1
[2025-12-03 06:44:29]  *** Contents of shared directory: ***
[2025-12-03 06:44:29] total 1055772
[2025-12-03 06:44:29] -rw-r--r-- 2 mf493845 unix-user 377745239 Dec  3 02:21 ATLAS.root_0
[2025-12-03 06:44:29] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 02:21 start_atlas.sh
[2025-12-03 06:44:29] -rw-r--r-- 2 mf493845 unix-user    590126 Dec  3 02:21 input.tar.gz
[2025-12-03 06:44:29] -rw------- 1 mf493845 unix-user 698841060 Dec  3 06:43 HITS.pool.root.1
[2025-12-03 06:44:29] -rw------- 1 mf493845 unix-user   3911680 Dec  3 06:44 result.tar.gz
06:44:30 (31476): run_atlas exited; CPU time 119581.019961
06:44:30 (31476): called boinc_finish(0)

</stderr_txt>
]]>

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