Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:49:20 (630108): wrapper (7.7.26015): starting
17:49:20 (630108): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 17:49:20] Arguments: --nthreads 8
[2025-12-02 17:49:20] Threads: 8
[2025-12-02 17:49:20] Checking for CVMFS
[2025-12-02 17:49:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 17:49:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 17:49:21] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 17:49:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 17:49:22] 2.13.2.0 1657905 39519 239652 153571 0 534 39393187 40960001 40681 16776704 0 457191347 99.692 363118516 48433 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-02 17:49:22] CVMFS is ok
[2025-12-02 17:49:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 17:49:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 17:49:22] Further information can be found at the LHC@home message board.
[2025-12-02 17:49:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 17:49:22] Checking for apptainer binary...
[2025-12-02 17:49:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 17:49:22] Running /usr/bin/apptainer --version
[2025-12-02 17:49:22] apptainer version 1.4.4-1.el9
[2025-12-02 17:49:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 17:49:22] c-208-39.aglt2.org
[2025-12-02 17:49:22] apptainer works
[2025-12-02 17:49:22] Set ATHENA_PROC_NUMBER=8
[2025-12-02 17:49:22] Set ATHENA_CORE_NUMBER=8
[2025-12-02 17:49:22] Starting ATLAS job with PandaID=6895362288
[2025-12-02 17:49:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
23:00:07 (630108): BOINC client no longer exists - exiting
23:00:07 (630108): timer handler: client dead, exiting
23:22:08 (3494048): wrapper (7.7.26015): starting
23:22:08 (3494048): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 23:22:08] Arguments: --nthreads 8
[2025-12-02 23:22:08] Threads: 8
[2025-12-02 23:22:08] This job has been restarted, cleaning up previous attempt
[2025-12-02 23:22:09] Checking for CVMFS
[2025-12-02 23:22:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 23:22:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 23:22:10] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 23:22:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 23:22:10] 2.13.2.0 1657905 39852 249380 153581 0 461 24827615 40960001 29220 16776704 0 460045669 99.693 364320327 48430 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-02 23:22:10] CVMFS is ok
[2025-12-02 23:22:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 23:22:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 23:22:10] Further information can be found at the LHC@home message board.
[2025-12-02 23:22:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 23:22:10] Checking for apptainer binary...
[2025-12-02 23:22:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 23:22:10] Running /usr/bin/apptainer --version
[2025-12-02 23:22:11] apptainer version 1.4.4-1.el9
[2025-12-02 23:22:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 23:22:11] c-208-39.aglt2.org
[2025-12-02 23:22:11] apptainer works
[2025-12-02 23:22:11] Set ATHENA_PROC_NUMBER=8
[2025-12-02 23:22:11] Set ATHENA_CORE_NUMBER=8
[2025-12-02 23:22:11] Starting ATLAS job with PandaID=6895362288
[2025-12-02 23:22:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 08:45:26]  *** The last 200 lines of the pilot log: ***
[2025-12-03 08:45:26] 2025-12-03 13:44:38,189 | INFO     | intersect: -39668036770.305984
[2025-12-03 08:45:26] 2025-12-03 13:44:38,189 | INFO     | chi2: 17.18073480808846
[2025-12-03 08:45:26] 2025-12-03 13:44:38,189 | INFO     | sum of square deviations: 49916673807.764824
[2025-12-03 08:45:26] 2025-12-03 13:44:38,193 | INFO     | sum of deviations: 1316171747428.7058
[2025-12-03 08:45:26] 2025-12-03 13:44:38,193 | INFO     | mean x: 1764752517.5882354
[2025-12-03 08:45:26] 2025-12-03 13:44:38,193 | INFO     | mean y: 2808864.6102941176
[2025-12-03 08:45:26] 2025-12-03 13:44:38,193 | INFO     | intersect: -46529085744.36111
[2025-12-03 08:45:26] 2025-12-03 13:44:38,193 | INFO     | chi2: 14.53560265389004
[2025-12-03 08:45:26] 2025-12-03 13:44:38,193 | INFO     | current chi2=14.53560265389004 (change=15.395919812190611 %)
[2025-12-03 08:45:26] 2025-12-03 13:44:38,193 | INFO     | right removable region: 543
[2025-12-03 08:45:26] 2025-12-03 13:44:38,194 | INFO     | sum of square deviations: 49916312687.7649
[2025-12-03 08:45:26] 2025-12-03 13:44:38,197 | INFO     | sum of deviations: 926088418854.6473
[2025-12-03 08:45:26] 2025-12-03 13:44:38,197 | INFO     | mean x: 1764752822.5882354
[2025-12-03 08:45:26] 2025-12-03 13:44:38,198 | INFO     | mean y: 2815934.288602941
[2025-12-03 08:45:26] 2025-12-03 13:44:38,198 | INFO     | intersect: -32738327454.3056
[2025-12-03 08:45:26] 2025-12-03 13:44:38,198 | INFO     | chi2: 11.946903402112348
[2025-12-03 08:45:26] 2025-12-03 13:44:38,198 | INFO     | current chi2=11.946903402112348 (change=30.463373449615755 %)
[2025-12-03 08:45:26] 2025-12-03 13:44:38,198 | INFO     | sum of square deviations: 48552273991.78858
[2025-12-03 08:45:26] 2025-12-03 13:44:38,202 | INFO     | sum of deviations: 727082480458.476
[2025-12-03 08:45:26] 2025-12-03 13:44:38,202 | INFO     | mean x: 1764752975.0983303
[2025-12-03 08:45:26] 2025-12-03 13:44:38,202 | INFO     | mean y: 2838178.085343228
[2025-12-03 08:45:26] 2025-12-03 13:44:38,202 | INFO     | intersect: -26424780242.999886
[2025-12-03 08:45:26] 2025-12-03 13:44:38,202 | INFO     | chi2: 8.168922761297003
[2025-12-03 08:45:26] 2025-12-03 13:44:38,202 | INFO     | current chi2=8.168922761297003 (change=31.62309523777815 %)
[2025-12-03 08:45:26] 2025-12-03 13:44:38,203 | INFO     | sum of square deviations: 47213305533.20032
[2025-12-03 08:45:26] 2025-12-03 13:44:38,206 | INFO     | sum of deviations: 529770650692.7223
[2025-12-03 08:45:26] 2025-12-03 13:44:38,206 | INFO     | mean x: 1764753127.6086142
[2025-12-03 08:45:26] 2025-12-03 13:44:38,206 | INFO     | mean y: 2860657.6254681647
[2025-12-03 08:45:26] 2025-12-03 13:44:38,206 | INFO     | intersect: -19799065985.019836
[2025-12-03 08:45:26] 2025-12-03 13:44:38,207 | INFO     | chi2: 4.574104899995867
[2025-12-03 08:45:26] 2025-12-03 13:44:38,207 | INFO     | current chi2=4.574104899995867 (change=44.00602094480296 %)
[2025-12-03 08:45:26] 2025-12-03 13:44:38,207 | INFO     | sum of square deviations: 45899239899.965965
[2025-12-03 08:45:26] 2025-12-03 13:44:38,211 | INFO     | sum of deviations: 402647195766.0107
[2025-12-03 08:45:26] 2025-12-03 13:44:38,211 | INFO     | mean x: 1764753280.1153119
[2025-12-03 08:45:26] 2025-12-03 13:44:38,211 | INFO     | mean y: 2875384.2948960303
[2025-12-03 08:45:26] 2025-12-03 13:44:38,211 | INFO     | intersect: -15478273345.094551
[2025-12-03 08:45:26] 2025-12-03 13:44:38,211 | INFO     | chi2: 3.03819331928164
[2025-12-03 08:45:26] 2025-12-03 13:44:38,211 | INFO     | current chi2=3.03819331928164 (change=33.5784074544424 %)
[2025-12-03 08:45:26] 2025-12-03 13:44:38,211 | INFO     | sum of square deviations: 44610036787.01526
[2025-12-03 08:45:26] 2025-12-03 13:44:38,215 | INFO     | sum of deviations: 362577011232.1907
[2025-12-03 08:45:26] 2025-12-03 13:44:38,215 | INFO     | mean x: 1764753432.6068702
[2025-12-03 08:45:26] 2025-12-03 13:44:38,215 | INFO     | mean y: 2880121.8358778628
[2025-12-03 08:45:26] 2025-12-03 13:44:38,215 | INFO     | intersect: -14340506955.186068
[2025-12-03 08:45:26] 2025-12-03 13:44:38,223 | INFO     | chi2: 2.963379082966373
[2025-12-03 08:45:26] 2025-12-03 13:44:38,223 | INFO     | current chi2=2.963379082966373 (change=2.462458061521778 %)
[2025-12-03 08:45:26] 2025-12-03 13:44:38,223 | INFO     | left removable region: 50
[2025-12-03 08:45:26] 2025-12-03 13:44:38,223 | INFO     | sum of square deviations: 37152037739.371284
[2025-12-03 08:45:26] 2025-12-03 13:44:38,226 | INFO     | sum of deviations: 420181945611.7442
[2025-12-03 08:45:26] 2025-12-03 13:44:38,237 | INFO     | mean x: 1764754012.0730224
[2025-12-03 08:45:26] 2025-12-03 13:44:38,237 | INFO     | mean y: 2914695.5070993914
[2025-12-03 08:45:26] 2025-12-03 13:44:38,237 | INFO     | intersect: -19956092116.470867
[2025-12-03 08:45:26] 2025-12-03 13:44:38,237 | INFO     | chi2: 0.030648951713498705
[2025-12-03 08:45:26] 2025-12-03 13:44:38,237 | INFO     | current memory leak: 11.31 B/s (using 493 data points, chi2=0.03)
[2025-12-03 08:45:26] 2025-12-03 13:44:38,238 | INFO     | could have reported an average CPU frequency of 3757 MHz (22 samples)
[2025-12-03 08:45:26] 2025-12-03 13:44:38,238 | INFO     | ..............................
[2025-12-03 08:45:26] 2025-12-03 13:44:38,238 | INFO     | . Timing measurements:
[2025-12-03 08:45:26] 2025-12-03 13:44:38,238 | INFO     | . get job = 0 s
[2025-12-03 08:45:26] 2025-12-03 13:44:38,238 | INFO     | . initial setup = 4 s
[2025-12-03 08:45:26] 2025-12-03 13:44:38,238 | INFO     | . payload setup = 48 s
[2025-12-03 08:45:26] 2025-12-03 13:44:38,238 | INFO     | . stage-in = 0 s
[2025-12-03 08:45:26] 2025-12-03 13:44:38,238 | INFO     | . payload execution = 33527 s
[2025-12-03 08:45:26] 2025-12-03 13:44:38,238 | INFO     | . stage-out = 5 s
[2025-12-03 08:45:26] 2025-12-03 13:44:38,238 | INFO     | . log creation = 1 s
[2025-12-03 08:45:26] 2025-12-03 13:44:38,238 | INFO     | ..............................
[2025-12-03 08:45:26] 2025-12-03 13:44:38,515 | INFO     | 
[2025-12-03 08:45:26] 2025-12-03 13:44:38,515 | INFO     | job summary report
[2025-12-03 08:45:26] 2025-12-03 13:44:38,515 | INFO     | --------------------------------------------------
[2025-12-03 08:45:26] 2025-12-03 13:44:38,515 | INFO     | PanDA job id: 6895362288
[2025-12-03 08:45:26] 2025-12-03 13:44:38,515 | INFO     | task id: 47556137
[2025-12-03 08:45:26] 2025-12-03 13:44:38,515 | INFO     | errors: (none)
[2025-12-03 08:45:26] 2025-12-03 13:44:38,515 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 08:45:26] 2025-12-03 13:44:38,515 | INFO     | pilot state: finished 
[2025-12-03 08:45:26] 2025-12-03 13:44:38,515 | INFO     | transexitcode: 0
[2025-12-03 08:45:26] 2025-12-03 13:44:38,515 | INFO     | exeerrorcode: 0
[2025-12-03 08:45:26] 2025-12-03 13:44:38,515 | INFO     | exeerrordiag: 
[2025-12-03 08:45:26] 2025-12-03 13:44:38,515 | INFO     | exitcode: 0
[2025-12-03 08:45:26] 2025-12-03 13:44:38,515 | INFO     | exitmsg: OK
[2025-12-03 08:45:26] 2025-12-03 13:44:38,515 | INFO     | cpuconsumptiontime: 139524 s
[2025-12-03 08:45:26] 2025-12-03 13:44:38,515 | INFO     | nevents: 1000
[2025-12-03 08:45:26] 2025-12-03 13:44:38,515 | INFO     | neventsw: 0
[2025-12-03 08:45:26] 2025-12-03 13:44:38,515 | INFO     | pid: 3526221
[2025-12-03 08:45:26] 2025-12-03 13:44:38,515 | INFO     | pgrp: 3526221
[2025-12-03 08:45:26] 2025-12-03 13:44:38,515 | INFO     | corecount: 8
[2025-12-03 08:45:26] 2025-12-03 13:44:38,515 | INFO     | event service: False
[2025-12-03 08:45:26] 2025-12-03 13:44:38,515 | INFO     | sizes: {0: 2284144, 1: 2284343, 2: 2284343, 12: 2284371, 23: 2284399, 29: 2284689, 34: 2284845, 33576: 2325568, 33582: 2334562, 33585: 2334618, 33613: 2334864}
[2025-12-03 08:45:26] 2025-12-03 13:44:38,515 | INFO     | --------------------------------------------------
[2025-12-03 08:45:26] 2025-12-03 13:44:38,516 | INFO     | 
[2025-12-03 08:45:26] 2025-12-03 13:44:38,516 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-12-03 08:45:26] 2025-12-03 13:44:38,615 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 08:45:26] 2025-12-03 13:44:38,615 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 08:45:26] 2025-12-03 13:44:38,615 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 08:45:26] 2025-12-03 13:44:38,615 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 08:45:26] 2025-12-03 13:44:38,615 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 08:45:26] 2025-12-03 13:44:38,615 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 08:45:26] 2025-12-03 13:44:38,615 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 08:45:26] 2025-12-03 13:44:38,615 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 08:45:26] 2025-12-03 13:44:38,615 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 08:45:26] 2025-12-03 13:44:38,615 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 08:45:26] 2025-12-03 13:44:38,615 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 08:45:26] 2025-12-03 13:44:38,615 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 08:45:26] 2025-12-03 13:44:38,615 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 08:45:26] 2025-12-03 13:44:38,615 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 08:45:26] 2025-12-03 13:44:38,616 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 08:45:26] 2025-12-03 13:44:38,616 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 08:45:26] 2025-12-03 13:44:38,616 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 08:45:26] 2025-12-03 13:44:38,616 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 08:45:26] 2025-12-03 13:44:38,616 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 08:45:26] 2025-12-03 13:44:38,616 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 08:45:26] 2025-12-03 13:44:38,616 | INFO     | job 6895362288 has completed (purged errors)
[2025-12-03 08:45:26] 2025-12-03 13:44:38,616 | INFO     | overall cleanup function is called
[2025-12-03 08:45:26] 2025-12-03 13:44:39,631 | INFO     | --- collectZombieJob: --- 10, [3526221]
[2025-12-03 08:45:26] 2025-12-03 13:44:39,631 | INFO     | zombie collector waiting for pid 3526221
[2025-12-03 08:45:26] 2025-12-03 13:44:39,631 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 08:45:26] 2025-12-03 13:44:39,631 | INFO     | collected zombie processes
[2025-12-03 08:45:26] 2025-12-03 13:44:39,631 | INFO     | will attempt to kill all subprocesses of pid=3526221
[2025-12-03 08:45:26] 2025-12-03 13:44:40,392 | INFO     | process IDs to be killed: [3526221] (in reverse order)
[2025-12-03 08:45:26] 2025-12-03 13:44:40,624 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 08:45:26] 2025-12-03 13:44:40,624 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 08:45:26] 2025-12-03 13:44:40,649 | INFO     | did not find any defunct processes belonging to 3526221
[2025-12-03 08:45:26] 2025-12-03 13:44:40,674 | INFO     | did not find any defunct processes belonging to 3526221
[2025-12-03 08:45:26] 2025-12-03 13:44:40,675 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 08:45:26] 2025-12-03 13:44:40,675 | INFO     | ready for new job
[2025-12-03 08:45:26] 2025-12-03 13:44:40,676 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 08:45:26] 2025-12-03 13:44:40,677 | INFO     | ***************************************
[2025-12-03 08:45:26] 2025-12-03 13:44:40,678 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 08:45:26] 2025-12-03 13:44:40,678 | INFO     | ***************************************
[2025-12-03 08:45:26] 2025-12-03 13:44:40,678 | INFO     | 
[2025-12-03 08:45:26] 2025-12-03 13:44:40,682 | INFO     | architecture information:
[2025-12-03 08:45:26] 2025-12-03 13:44:40,683 | INFO     | executing command: cat /etc/os-release
[2025-12-03 08:45:26] 2025-12-03 13:44:40,697 | INFO     | cat /etc/os-release:
[2025-12-03 08:45:26] NAME="CentOS Linux"
[2025-12-03 08:45:26] VERSION="7 (Core)"
[2025-12-03 08:45:26] ID="centos"
[2025-12-03 08:45:26] ID_LIKE="rhel fedora"
[2025-12-03 08:45:26] VERSION_ID="7"
[2025-12-03 08:45:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 08:45:26] ANSI_COLOR="0;31"
[2025-12-03 08:45:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 08:45:26] HOME_URL="https://www.centos.org/"
[2025-12-03 08:45:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 08:45:26] 
[2025-12-03 08:45:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 08:45:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 08:45:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 08:45:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 08:45:26] 
[2025-12-03 08:45:26] 2025-12-03 13:44:40,697 | INFO     | ***************************************
[2025-12-03 08:45:26] 2025-12-03 13:44:41,217 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-12-03 08:45:26] 2025-12-03 13:44:41,250 | INFO     | sufficient remaining disk space (166411108352 B)
[2025-12-03 08:45:26] 2025-12-03 13:44:41,250 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 08:45:26] 2025-12-03 13:44:41,250 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 08:45:26] 2025-12-03 13:44:41,250 | INFO     | update_server=False
[2025-12-03 08:45:26] 2025-12-03 13:44:41,250 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 08:45:26] 2025-12-03 13:44:41,251 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 08:45:26] 2025-12-03 13:44:41,255 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 08:45:26] 2025-12-03 13:44:41,255 | INFO     | aborting loop
[2025-12-03 08:45:26] 2025-12-03 13:44:42,215 | INFO     | all data control threads have been joined
[2025-12-03 08:45:26] 2025-12-03 13:44:42,256 | INFO     | [job] retrieve thread has finished
[2025-12-03 08:45:26] 2025-12-03 13:44:42,261 | INFO     | [job] job monitor thread has finished
[2025-12-03 08:45:26] 2025-12-03 13:44:42,283 | INFO     | all payload control threads have been joined
[2025-12-03 08:45:26] 2025-12-03 13:44:42,536 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 08:45:26] 2025-12-03 13:44:42,554 | INFO     | [job] validate thread has finished
[2025-12-03 08:45:26] 2025-12-03 13:44:42,556 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 08:45:26] 2025-12-03 13:44:42,564 | INFO     | [data] copytool_in thread has finished
[2025-12-03 08:45:26] 2025-12-03 13:44:42,565 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 08:45:26] 2025-12-03 13:44:42,604 | INFO     | all job control threads have been joined
[2025-12-03 08:45:26] 2025-12-03 13:44:42,973 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 08:45:26] 2025-12-03 13:44:43,221 | INFO     | [data] control thread has finished
[2025-12-03 08:45:26] 2025-12-03 13:44:43,258 | INFO     | [data] copytool_out thread has finished
[2025-12-03 08:45:26] 2025-12-03 13:44:43,289 | INFO     | [payload] control thread has finished
[2025-12-03 08:45:26] 2025-12-03 13:44:43,528 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 08:45:26] 2025-12-03 13:44:43,610 | INFO     | [job] control thread has finished
[2025-12-03 08:45:26] 2025-12-03 13:44:43,774 | INFO     | [payload] failed_post thread has finished
[2025-12-03 08:45:26] 2025-12-03 13:44:43,774 | INFO     | [payload] validate_post thread has finished
[2025-12-03 08:45:26] 2025-12-03 13:44:44,054 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 08:45:26] 2025-12-03 13:44:44,547 | INFO     | [job] queue monitor thread has finished
[2025-12-03 08:45:26] 2025-12-03 13:44:48,073 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 08:45:26] 2025-12-03 13:45:10,985 | INFO     | PID=3504852 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-03 08:45:26] 2025-12-03 13:45:10,985 | INFO     | .. there are 35 such processes running
[2025-12-03 08:45:26] 2025-12-03 13:45:10,986 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 08:45:26] 2025-12-03 13:45:10,986 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 08:45:26] 2025-12-03 13:45:10,986 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 08:45:26] 2025-12-03 13:45:18,290 | INFO     | [monitor] cgroup control has ended
[2025-12-03 08:45:26] 2025-12-03 13:45:19,829 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140696118654784)>', '<ExcThread(monitor, started 140695402702592)>']
[2025-12-03 08:45:26] 2025-12-03 13:45:20,042 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 08:45:26] 2025-12-03 13:45:20,042 | INFO     | [monitor] control thread has ended
[2025-12-03 08:45:26] 2025-12-03 13:45:24,855 | INFO     | all workflow threads have been joined
[2025-12-03 08:45:26] 2025-12-03 13:45:24,855 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 08:45:26] 2025-12-03 13:45:24,855 | INFO     | traces error code: 0
[2025-12-03 08:45:26] 2025-12-03 13:45:24,855 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 08:45:26] 2025-12-03 13:45:25,044 [wrapper] ==== pilot stdout END ====
[2025-12-03 08:45:26] 2025-12-03 13:45:25,046 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 08:45:26] 2025-12-03 13:45:25,048 [wrapper] pilotpid: 3504852
[2025-12-03 08:45:26] 2025-12-03 13:45:25,050 [wrapper] Pilot exit status: 0
[2025-12-03 08:45:26] 2025-12-03 13:45:25,077 [wrapper] pandaids: 6895362288 6895362288
[2025-12-03 08:45:26] 2025-12-03 13:45:25,202 [wrapper] cleanup supervisor_pilot  913211 3504853
[2025-12-03 08:45:26] 2025-12-03 13:45:25,220 [wrapper] Test setup, not cleaning
[2025-12-03 08:45:26] 2025-12-03 13:45:25,228 [wrapper] apfmon messages muted
[2025-12-03 08:45:26] 2025-12-03 13:45:25,266 [wrapper] ==== wrapper stdout END ====
[2025-12-03 08:45:26] 2025-12-03 13:45:25,320 [wrapper] ==== wrapper stderr END ====
[2025-12-03 08:45:26]  *** Error codes and diagnostics ***
[2025-12-03 08:45:26]     "exeErrorCode": 0,
[2025-12-03 08:45:26]     "exeErrorDiag": "",
[2025-12-03 08:45:26]     "pilotErrorCode": 0,
[2025-12-03 08:45:26]     "pilotErrorDiag": "",
[2025-12-03 08:45:26]  *** Listing of results directory ***
[2025-12-03 08:45:26] total 1713620
[2025-12-03 08:45:26] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-12-03 08:45:26] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 09:56 pilot3.tar.gz
[2025-12-03 08:45:26] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 09:57 queuedata.json
[2025-12-03 08:45:26] -rwx------. 1 boincer umatlas     36292 Nov 23 09:59 runpilot2-wrapper.sh
[2025-12-03 08:45:26] -rw-r--r--. 1 boincer umatlas       100 Dec  2 17:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 08:45:26] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  2 17:49 run_atlas
[2025-12-03 08:45:26] -rw-r--r--. 1 boincer umatlas       105 Dec  2 17:49 job.xml
[2025-12-03 08:45:26] -rw-r--r--. 3 boincer umatlas 410863899 Dec  2 17:49 EVNT.47483658._000774.pool.root.1
[2025-12-03 08:45:26] -rw-r--r--. 3 boincer umatlas 410863899 Dec  2 17:49 ATLAS.root_0
[2025-12-03 08:45:26] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 17:49 start_atlas.sh
[2025-12-03 08:45:26] drwxrwx--x. 2 boincer umatlas      4096 Dec  2 17:49 shared
[2025-12-03 08:45:26] -rw-r--r--. 2 boincer umatlas    590103 Dec  2 17:49 input.tar.gz
[2025-12-03 08:45:26] -rw-r--r--. 1 boincer umatlas         0 Dec  2 17:49 boinc_lockfile
[2025-12-03 08:45:26] -rw-r--r--. 1 boincer umatlas      2786 Dec  2 23:22 pandaJob.out
[2025-12-03 08:45:26] -rw-------. 1 boincer umatlas        57 Dec  2 23:22 setup.sh.local
[2025-12-03 08:45:26] -rw-------. 1 boincer umatlas    989297 Dec  2 23:23 agis_schedconf.cvmfs.json
[2025-12-03 08:45:26] -rw-r--r--. 1 boincer umatlas      7176 Dec  3 08:36 init_data.xml
[2025-12-03 08:45:26] -rw-r--r--. 1 boincer umatlas       533 Dec  3 08:36 boinc_task_state.xml
[2025-12-03 08:45:26] -rw-------. 1 boincer umatlas 916942228 Dec  3 08:43 HITS.47556137._007687.pool.root.1
[2025-12-03 08:45:26] -rw-------. 1 boincer umatlas      1071 Dec  3 08:44 memory_monitor_summary.json
[2025-12-03 08:45:26] -rw-------. 1 boincer umatlas   1516240 Dec  3 08:44 agis_ddmendpoints.agis.ALL.json
[2025-12-03 08:45:26] -rw-------. 1 boincer umatlas   1789362 Dec  3 08:44 log.47556137._007687.job.log.tgz.1
[2025-12-03 08:45:26] -rw-------. 1 boincer umatlas      8634 Dec  3 08:44 heartbeat.json
[2025-12-03 08:45:26] -rw-------. 1 boincer umatlas        97 Dec  3 08:45 pilot_heartbeat.json
[2025-12-03 08:45:26] -rw-r--r--. 1 boincer umatlas      8192 Dec  3 08:45 boinc_mmap_file
[2025-12-03 08:45:26] -rw-------. 1 boincer umatlas      4825 Dec  3 08:45 pilotlog.txt
[2025-12-03 08:45:26] -rw-r--r--. 1 boincer umatlas        29 Dec  3 08:45 wrapper_checkpoint.txt
[2025-12-03 08:45:26] -rw-------. 1 boincer umatlas   4288770 Dec  3 08:45 log.47556137._007687.job.log.1
[2025-12-03 08:45:26] -rw-------. 1 boincer umatlas       353 Dec  3 08:45 output.list
[2025-12-03 08:45:26] -rw-r--r--. 1 boincer umatlas       620 Dec  3 08:45 runtime_log
[2025-12-03 08:45:26] -rw-------. 1 boincer umatlas   6092800 Dec  3 08:45 result.tar.gz
[2025-12-03 08:45:26] -rw-r--r--. 1 boincer umatlas      9428 Dec  3 08:45 runtime_log.err
[2025-12-03 08:45:26] -rw-------. 1 boincer umatlas       790 Dec  3 08:45 Fk4NDmajQh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmNzKKDmB9ACun.diag
[2025-12-03 08:45:26] -rw-r--r--. 1 boincer umatlas     23455 Dec  3 08:45 stderr.txt
[2025-12-03 08:45:26] HITS file was successfully produced:
[2025-12-03 08:45:26] -rw-------. 1 boincer umatlas 916942228 Dec  3 08:43 shared/HITS.pool.root.1
[2025-12-03 08:45:26]  *** Contents of shared directory: ***
[2025-12-03 08:45:26] total 1303244
[2025-12-03 08:45:26] -rw-r--r--. 3 boincer umatlas 410863899 Dec  2 17:49 ATLAS.root_0
[2025-12-03 08:45:26] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 17:49 start_atlas.sh
[2025-12-03 08:45:26] -rw-r--r--. 2 boincer umatlas    590103 Dec  2 17:49 input.tar.gz
[2025-12-03 08:45:26] -rw-------. 1 boincer umatlas 916942228 Dec  3 08:43 HITS.pool.root.1
[2025-12-03 08:45:26] -rw-------. 1 boincer umatlas   6092800 Dec  3 08:45 result.tar.gz
08:45:28 (3494048): run_atlas exited; CPU time 140217.429732
08:45:28 (3494048): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN