Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:03:41 (875219): wrapper (7.7.26015): starting
17:03:41 (875219): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 17:03:41] Arguments: --nthreads 8
[2025-12-02 17:03:41] Threads: 8
[2025-12-02 17:03:41] Checking for CVMFS
[2025-12-02 17:03:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 17:03:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 17:03:42] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 17:03:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 17:03:42] 2.13.3.0 11235 37570 239160 153569 0 480 25671145 32935937 44563 16776704 0 315568428 99.591 311927176 32780 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-02 17:03:42] CVMFS is ok
[2025-12-02 17:03:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 17:03:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 17:03:42] Further information can be found at the LHC@home message board.
[2025-12-02 17:03:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 17:03:42] Checking for apptainer binary...
[2025-12-02 17:03:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 17:03:42] Running /usr/bin/apptainer --version
[2025-12-02 17:03:42] apptainer version 1.4.4-1.el9
[2025-12-02 17:03:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 17:03:43] c7-2-37.aglt2.org
[2025-12-02 17:03:43] apptainer works
[2025-12-02 17:03:43] Set ATHENA_PROC_NUMBER=8
[2025-12-02 17:03:43] Set ATHENA_CORE_NUMBER=8
[2025-12-02 17:03:43] Starting ATLAS job with PandaID=6912027431
[2025-12-02 17:03:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 02:05:31]  *** The last 200 lines of the pilot log: ***
[2025-12-03 02:05:31] 2025-12-03 07:04:42,433 | INFO     | monitor loop #1757: job 0:6912027431 is in state 'finished'
[2025-12-03 02:05:31] 2025-12-03 07:04:42,433 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 02:05:31] 2025-12-03 07:04:44,953 | INFO     | monitor loop #1758: job 0:6912027431 is in state 'finished'
[2025-12-03 02:05:31] 2025-12-03 07:04:44,953 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 02:05:31] 2025-12-03 07:04:46,893 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 02:05:31] 2025-12-03 07:04:46,906 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3405.5106562499973
[2025-12-03 02:05:31] 2025-12-03 07:04:46,923 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6912027431/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 02:05:31] 2025-12-03 07:04:46,978 | INFO     | extracted standard info from prmon json
[2025-12-03 02:05:31] 2025-12-03 07:04:46,979 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 02:05:31] 2025-12-03 07:04:46,979 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 02:05:31] 2025-12-03 07:04:46,979 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-03 02:05:31] 2025-12-03 07:04:46,979 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-03 02:05:31] 2025-12-03 07:04:46,991 | INFO     | fitting pss+swap vs Time
[2025-12-03 02:05:31] 2025-12-03 07:04:47,152 | INFO     | sum of square deviations: 46164187716.4697
[2025-12-03 02:05:31] 2025-12-03 07:04:47,182 | INFO     | sum of deviations: 107699629774.3906
[2025-12-03 02:05:31] 2025-12-03 07:04:47,183 | INFO     | mean x: 1764729275.5075471
[2025-12-03 02:05:31] 2025-12-03 07:04:47,183 | INFO     | mean y: 2551122.2773584905
[2025-12-03 02:05:31] 2025-12-03 07:04:47,183 | INFO     | intersect: -4114507988.3800707
[2025-12-03 02:05:31] 2025-12-03 07:04:47,183 | INFO     | chi2: 1.7380740643340735
[2025-12-03 02:05:31] 2025-12-03 07:04:47,184 | INFO     | sum of square deviations: 44869941413.96946
[2025-12-03 02:05:31] 2025-12-03 07:04:47,258 | INFO     | sum of deviations: 105772104584.39056
[2025-12-03 02:05:31] 2025-12-03 07:04:47,259 | INFO     | mean x: 1764729123.0076191
[2025-12-03 02:05:31] 2025-12-03 07:04:47,259 | INFO     | mean y: 2550895.1523809526
[2025-12-03 02:05:31] 2025-12-03 07:04:47,259 | INFO     | intersect: -4157452605.6270685
[2025-12-03 02:05:31] 2025-12-03 07:04:47,259 | INFO     | chi2: 1.738268550832045
[2025-12-03 02:05:31] 2025-12-03 07:04:47,259 | INFO     | current chi2=1.738268550832045 (change=-0.011189770445484828 %)
[2025-12-03 02:05:31] 2025-12-03 07:04:47,260 | INFO     | right removable region: 524
[2025-12-03 02:05:31] 2025-12-03 07:04:47,260 | INFO     | sum of square deviations: 44869938973.96946
[2025-12-03 02:05:31] 2025-12-03 07:04:47,270 | INFO     | sum of deviations: 13966583862.036198
[2025-12-03 02:05:31] 2025-12-03 07:04:47,270 | INFO     | mean x: 1764729428.0076191
[2025-12-03 02:05:31] 2025-12-03 07:04:47,270 | INFO     | mean y: 2562125.740952381
[2025-12-03 02:05:31] 2025-12-03 07:04:47,294 | INFO     | intersect: -546741976.5973697
[2025-12-03 02:05:31] 2025-12-03 07:04:47,294 | INFO     | chi2: 0.1317953514594091
[2025-12-03 02:05:31] 2025-12-03 07:04:47,294 | INFO     | current chi2=0.1317953514594091 (change=92.41716137626706 %)
[2025-12-03 02:05:31] 2025-12-03 07:04:47,295 | INFO     | sum of square deviations: 43600109293.9693
[2025-12-03 02:05:31] 2025-12-03 07:04:47,323 | INFO     | sum of deviations: 5719319011.261547
[2025-12-03 02:05:31] 2025-12-03 07:04:47,323 | INFO     | mean x: 1764729580.5076923
[2025-12-03 02:05:31] 2025-12-03 07:04:47,323 | INFO     | mean y: 2563111.309615385
[2025-12-03 02:05:31] 2025-12-03 07:04:47,323 | INFO     | intersect: -228928313.89489242
[2025-12-03 02:05:31] 2025-12-03 07:04:47,324 | INFO     | chi2: 0.11692694418147644
[2025-12-03 02:05:31] 2025-12-03 07:04:47,324 | INFO     | current chi2=0.11692694418147644 (change=11.281435280751841 %)
[2025-12-03 02:05:31] 2025-12-03 07:04:47,324 | INFO     | left removable region: 20
[2025-12-03 02:05:31] 2025-12-03 07:04:47,324 | INFO     | sum of square deviations: 39698044457.968285
[2025-12-03 02:05:31] 2025-12-03 07:04:47,404 | INFO     | sum of deviations: -16311135335.714283
[2025-12-03 02:05:31] 2025-12-03 07:04:47,405 | INFO     | mean x: 1764729702.5079365
[2025-12-03 02:05:31] 2025-12-03 07:04:47,405 | INFO     | mean y: 2565593.9285714286
[2025-12-03 02:05:31] 2025-12-03 07:04:47,405 | INFO     | intersect: 727657859.847076
[2025-12-03 02:05:31] 2025-12-03 07:04:47,405 | INFO     | chi2: 0.03236421129103564
[2025-12-03 02:05:31] 2025-12-03 07:04:47,406 | INFO     | current memory leak: -0.41 B/s (using 504 data points, chi2=0.03)
[2025-12-03 02:05:31] 2025-12-03 07:04:47,406 | INFO     | could have reported an average CPU frequency of 3337 MHz (21 samples)
[2025-12-03 02:05:31] 2025-12-03 07:04:47,406 | INFO     | ..............................
[2025-12-03 02:05:31] 2025-12-03 07:04:47,406 | INFO     | . Timing measurements:
[2025-12-03 02:05:31] 2025-12-03 07:04:47,406 | INFO     | . get job = 0 s
[2025-12-03 02:05:31] 2025-12-03 07:04:47,406 | INFO     | . initial setup = 5 s
[2025-12-03 02:05:31] 2025-12-03 07:04:47,406 | INFO     | . payload setup = 26 s
[2025-12-03 02:05:31] 2025-12-03 07:04:47,407 | INFO     | . stage-in = 0 s
[2025-12-03 02:05:31] 2025-12-03 07:04:47,407 | INFO     | . payload execution = 32345 s
[2025-12-03 02:05:31] 2025-12-03 07:04:47,407 | INFO     | . stage-out = 4 s
[2025-12-03 02:05:31] 2025-12-03 07:04:47,407 | INFO     | . log creation = 0 s
[2025-12-03 02:05:31] 2025-12-03 07:04:47,407 | INFO     | ..............................
[2025-12-03 02:05:31] 2025-12-03 07:04:47,474 | INFO     | monitor loop #1759: job 0:6912027431 is in state 'finished'
[2025-12-03 02:05:31] 2025-12-03 07:04:47,474 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 02:05:31] 2025-12-03 07:04:48,186 | INFO     | PID=881817 has CPU usage=10.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-03 02:05:31] 2025-12-03 07:04:48,187 | INFO     | .. there are 79 such processes running
[2025-12-03 02:05:31] 2025-12-03 07:04:48,223 | INFO     | 
[2025-12-03 02:05:31] 2025-12-03 07:04:48,223 | INFO     | job summary report
[2025-12-03 02:05:31] 2025-12-03 07:04:48,223 | INFO     | --------------------------------------------------
[2025-12-03 02:05:31] 2025-12-03 07:04:48,223 | INFO     | PanDA job id: 6912027431
[2025-12-03 02:05:31] 2025-12-03 07:04:48,223 | INFO     | task id: 46964970
[2025-12-03 02:05:31] 2025-12-03 07:04:48,223 | INFO     | errors: (none)
[2025-12-03 02:05:31] 2025-12-03 07:04:48,223 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 02:05:31] 2025-12-03 07:04:48,223 | INFO     | pilot state: finished 
[2025-12-03 02:05:31] 2025-12-03 07:04:48,223 | INFO     | transexitcode: 0
[2025-12-03 02:05:31] 2025-12-03 07:04:48,223 | INFO     | exeerrorcode: 0
[2025-12-03 02:05:31] 2025-12-03 07:04:48,223 | INFO     | exeerrordiag: 
[2025-12-03 02:05:31] 2025-12-03 07:04:48,223 | INFO     | exitcode: 0
[2025-12-03 02:05:31] 2025-12-03 07:04:48,223 | INFO     | exitmsg: OK
[2025-12-03 02:05:31] 2025-12-03 07:04:48,223 | INFO     | cpuconsumptiontime: 36719 s
[2025-12-03 02:05:31] 2025-12-03 07:04:48,224 | INFO     | nevents: 400
[2025-12-03 02:05:31] 2025-12-03 07:04:48,224 | INFO     | neventsw: 0
[2025-12-03 02:05:31] 2025-12-03 07:04:48,224 | INFO     | pid: 897370
[2025-12-03 02:05:31] 2025-12-03 07:04:48,224 | INFO     | pgrp: 897370
[2025-12-03 02:05:31] 2025-12-03 07:04:48,224 | INFO     | corecount: 8
[2025-12-03 02:05:31] 2025-12-03 07:04:48,224 | INFO     | event service: False
[2025-12-03 02:05:31] 2025-12-03 07:04:48,224 | INFO     | sizes: {0: 2283754, 1: 2283953, 11: 2284215, 12: 2284243, 32374: 2322691, 32375: 2322690, 32380: 2331872, 32381: 2331928, 32397: 2332122}
[2025-12-03 02:05:31] 2025-12-03 07:04:48,224 | INFO     | --------------------------------------------------
[2025-12-03 02:05:31] 2025-12-03 07:04:48,224 | INFO     | 
[2025-12-03 02:05:31] 2025-12-03 07:04:48,224 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-12-03 02:05:31] 2025-12-03 07:04:48,368 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 02:05:31] 2025-12-03 07:04:48,368 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 02:05:31] 2025-12-03 07:04:48,368 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 02:05:31] 2025-12-03 07:04:48,368 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 02:05:31] 2025-12-03 07:04:48,368 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 02:05:31] 2025-12-03 07:04:48,368 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 02:05:31] 2025-12-03 07:04:48,368 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 02:05:31] 2025-12-03 07:04:48,368 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 02:05:31] 2025-12-03 07:04:48,368 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 02:05:31] 2025-12-03 07:04:48,369 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 02:05:31] 2025-12-03 07:04:48,369 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 02:05:31] 2025-12-03 07:04:48,369 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 02:05:31] 2025-12-03 07:04:48,369 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 02:05:31] 2025-12-03 07:04:48,369 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 02:05:31] 2025-12-03 07:04:48,369 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 02:05:31] 2025-12-03 07:04:48,369 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 02:05:31] 2025-12-03 07:04:48,369 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 02:05:31] 2025-12-03 07:04:48,369 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 02:05:31] 2025-12-03 07:04:48,369 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 02:05:31] 2025-12-03 07:04:48,369 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 02:05:31] 2025-12-03 07:04:48,369 | INFO     | job 6912027431 has completed (purged errors)
[2025-12-03 02:05:31] 2025-12-03 07:04:48,369 | INFO     | overall cleanup function is called
[2025-12-03 02:05:31] 2025-12-03 07:04:49,402 | INFO     | --- collectZombieJob: --- 10, [897370]
[2025-12-03 02:05:31] 2025-12-03 07:04:49,402 | INFO     | zombie collector waiting for pid 897370
[2025-12-03 02:05:31] 2025-12-03 07:04:49,402 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 02:05:31] 2025-12-03 07:04:49,402 | INFO     | collected zombie processes
[2025-12-03 02:05:31] 2025-12-03 07:04:49,402 | INFO     | will attempt to kill all subprocesses of pid=897370
[2025-12-03 02:05:31] 2025-12-03 07:04:55,448 | INFO     | process IDs to be killed: [897370] (in reverse order)
[2025-12-03 02:05:31] 2025-12-03 07:04:55,767 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 02:05:31] 2025-12-03 07:04:55,767 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 02:05:31] 2025-12-03 07:04:55,796 | INFO     | did not find any defunct processes belonging to 897370
[2025-12-03 02:05:31] 2025-12-03 07:04:55,848 | INFO     | did not find any defunct processes belonging to 897370
[2025-12-03 02:05:31] 2025-12-03 07:04:55,850 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 02:05:31] 2025-12-03 07:04:55,850 | INFO     | ready for new job
[2025-12-03 02:05:31] 2025-12-03 07:04:55,850 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 02:05:31] 2025-12-03 07:04:55,903 | INFO     | ***************************************
[2025-12-03 02:05:31] 2025-12-03 07:04:55,903 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 02:05:31] 2025-12-03 07:04:55,903 | INFO     | ***************************************
[2025-12-03 02:05:31] 2025-12-03 07:04:55,903 | INFO     | 
[2025-12-03 02:05:31] 2025-12-03 07:04:55,991 | INFO     | architecture information:
[2025-12-03 02:05:31] 2025-12-03 07:04:56,011 | INFO     | executing command: cat /etc/os-release
[2025-12-03 02:05:31] 2025-12-03 07:04:56,170 | INFO     | cat /etc/os-release:
[2025-12-03 02:05:31] NAME="CentOS Linux"
[2025-12-03 02:05:31] VERSION="7 (Core)"
[2025-12-03 02:05:31] ID="centos"
[2025-12-03 02:05:31] ID_LIKE="rhel fedora"
[2025-12-03 02:05:31] VERSION_ID="7"
[2025-12-03 02:05:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 02:05:31] ANSI_COLOR="0;31"
[2025-12-03 02:05:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 02:05:31] HOME_URL="https://www.centos.org/"
[2025-12-03 02:05:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 02:05:31] 
[2025-12-03 02:05:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 02:05:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 02:05:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 02:05:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 02:05:31] 
[2025-12-03 02:05:31] 2025-12-03 07:04:56,170 | INFO     | ***************************************
[2025-12-03 02:05:31] 2025-12-03 07:04:56,681 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-12-03 02:05:31] 2025-12-03 07:04:56,801 | INFO     | sufficient remaining disk space (71944896512 B)
[2025-12-03 02:05:31] 2025-12-03 07:04:56,801 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 02:05:31] 2025-12-03 07:04:56,801 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 02:05:31] 2025-12-03 07:04:56,801 | INFO     | update_server=False
[2025-12-03 02:05:31] 2025-12-03 07:04:56,809 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 02:05:31] 2025-12-03 07:04:56,810 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 02:05:31] 2025-12-03 07:04:56,810 | INFO     | aborting loop
[2025-12-03 02:05:31] 2025-12-03 07:04:56,810 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 02:05:31] 2025-12-03 07:04:56,813 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 02:05:31] 2025-12-03 07:04:57,182 | INFO     | all job control threads have been joined
[2025-12-03 02:05:31] 2025-12-03 07:04:57,299 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 02:05:31] 2025-12-03 07:04:57,551 | INFO     | all data control threads have been joined
[2025-12-03 02:05:31] 2025-12-03 07:04:57,815 | INFO     | [job] retrieve thread has finished
[2025-12-03 02:05:31] 2025-12-03 07:04:57,816 | INFO     | [job] job monitor thread has finished
[2025-12-03 02:05:31] 2025-12-03 07:04:57,939 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 02:05:31] 2025-12-03 07:04:57,944 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 02:05:31] 2025-12-03 07:04:58,188 | INFO     | [job] control thread has finished
[2025-12-03 02:05:31] 2025-12-03 07:04:58,211 | INFO     | all payload control threads have been joined
[2025-12-03 02:05:31] 2025-12-03 07:04:58,305 | INFO     | [job] queue monitor thread has finished
[2025-12-03 02:05:31] 2025-12-03 07:04:58,322 | INFO     | [payload] failed_post thread has finished
[2025-12-03 02:05:31] 2025-12-03 07:04:58,405 | INFO     | [payload] validate_post thread has finished
[2025-12-03 02:05:31] 2025-12-03 07:04:58,468 | INFO     | [data] copytool_in thread has finished
[2025-12-03 02:05:31] 2025-12-03 07:04:58,557 | INFO     | [data] control thread has finished
[2025-12-03 02:05:31] 2025-12-03 07:04:58,584 | INFO     | [job] validate thread has finished
[2025-12-03 02:05:31] 2025-12-03 07:04:58,777 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 02:05:31] 2025-12-03 07:04:58,817 | INFO     | [data] copytool_out thread has finished
[2025-12-03 02:05:31] 2025-12-03 07:04:58,882 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 02:05:31] 2025-12-03 07:04:59,217 | INFO     | [payload] control thread has finished
[2025-12-03 02:05:31] 2025-12-03 07:05:00,824 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 02:05:31] 2025-12-03 07:05:22,075 | INFO     | PID=881817 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-03 02:05:31] 2025-12-03 07:05:22,075 | INFO     | .. there are 79 such processes running
[2025-12-03 02:05:31] 2025-12-03 07:05:22,076 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 02:05:31] 2025-12-03 07:05:22,076 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 02:05:31] 2025-12-03 07:05:22,076 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 02:05:31] 2025-12-03 07:05:23,186 | INFO     | [monitor] cgroup control has ended
[2025-12-03 02:05:31] 2025-12-03 07:05:25,188 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140320192870208)>', '<ExcThread(monitor, started 140319827928832)>']
[2025-12-03 02:05:31] 2025-12-03 07:05:26,100 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 02:05:31] 2025-12-03 07:05:26,100 | INFO     | [monitor] control thread has ended
[2025-12-03 02:05:31] 2025-12-03 07:05:30,224 | INFO     | all workflow threads have been joined
[2025-12-03 02:05:31] 2025-12-03 07:05:30,224 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 02:05:31] 2025-12-03 07:05:30,224 | INFO     | traces error code: 0
[2025-12-03 02:05:31] 2025-12-03 07:05:30,224 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 02:05:31] 2025-12-03 07:05:31,118 [wrapper] ==== pilot stdout END ====
[2025-12-03 02:05:31] 2025-12-03 07:05:31,123 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 02:05:31] 2025-12-03 07:05:31,146 [wrapper] pilotpid: 881817
[2025-12-03 02:05:31] 2025-12-03 07:05:31,163 [wrapper] Pilot exit status: 0
[2025-12-03 02:05:31] 2025-12-03 07:05:31,201 [wrapper] pandaids: 6912027431
[2025-12-03 02:05:31] 2025-12-03 07:05:31,345 [wrapper] cleanup supervisor_pilot 1678265 881818
[2025-12-03 02:05:31] 2025-12-03 07:05:31,348 [wrapper] Test setup, not cleaning
[2025-12-03 02:05:31] 2025-12-03 07:05:31,352 [wrapper] apfmon messages muted
[2025-12-03 02:05:31] 2025-12-03 07:05:31,356 [wrapper] ==== wrapper stdout END ====
[2025-12-03 02:05:31] 2025-12-03 07:05:31,358 [wrapper] ==== wrapper stderr END ====
[2025-12-03 02:05:31]  *** Error codes and diagnostics ***
[2025-12-03 02:05:31]     "exeErrorCode": 0,
[2025-12-03 02:05:31]     "exeErrorDiag": "",
[2025-12-03 02:05:31]     "pilotErrorCode": 0,
[2025-12-03 02:05:31]     "pilotErrorDiag": "",
[2025-12-03 02:05:31]  *** Listing of results directory ***
[2025-12-03 02:05:31] total 464244
[2025-12-03 02:05:31] -rw-r--r--. 1 boincer umatlas    576529 Dec  2 05:01 pilot3.tar.gz
[2025-12-03 02:05:31] -rw-r--r--. 1 boincer umatlas      5112 Dec  2 06:01 queuedata.json
[2025-12-03 02:05:31] -rwx------. 1 boincer umatlas     36292 Dec  2 06:02 runpilot2-wrapper.sh
[2025-12-03 02:05:31] -rw-r--r--. 1 boincer umatlas       100 Dec  2 17:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 02:05:31] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  2 17:03 run_atlas
[2025-12-03 02:05:31] -rw-r--r--. 1 boincer umatlas       105 Dec  2 17:03 job.xml
[2025-12-03 02:05:31] -rw-r--r--. 2 boincer umatlas 272146790 Dec  2 17:03 EVNT.46964963._000066.pool.root.1
[2025-12-03 02:05:31] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 17:03 start_atlas.sh
[2025-12-03 02:05:31] drwxrwx--x. 2 boincer umatlas      4096 Dec  2 17:03 shared
[2025-12-03 02:05:31] -rw-r--r--. 2 boincer umatlas    589949 Dec  2 17:03 input.tar.gz
[2025-12-03 02:05:31] -rw-r--r--. 1 boincer umatlas         0 Dec  2 17:03 boinc_lockfile
[2025-12-03 02:05:31] -rw-r--r--. 1 boincer umatlas      2595 Dec  2 17:03 pandaJob.out
[2025-12-03 02:05:31] -rw-------. 1 boincer umatlas        57 Dec  2 17:03 setup.sh.local
[2025-12-03 02:05:31] -rw-------. 1 boincer umatlas    989224 Dec  2 17:04 agis_schedconf.cvmfs.json
[2025-12-03 02:05:31] drwx------. 5 boincer umatlas      4096 Dec  2 17:04 pilot3
[2025-12-03 02:05:31] -rw-r--r--. 1 boincer umatlas      6945 Dec  3 02:02 init_data.xml
[2025-12-03 02:05:31] -rw-------. 1 boincer umatlas 190403587 Dec  3 02:03 HITS.46964970._001701.pool.root.1
[2025-12-03 02:05:31] -rw-r--r--. 1 boincer umatlas       530 Dec  3 02:04 boinc_task_state.xml
[2025-12-03 02:05:31] -rw-------. 1 boincer umatlas      1037 Dec  3 02:04 memory_monitor_summary.json
[2025-12-03 02:05:31] -rw-------. 1 boincer umatlas   1516240 Dec  3 02:04 agis_ddmendpoints.agis.ALL.json
[2025-12-03 02:05:31] -rw-------. 1 boincer umatlas    680906 Dec  3 02:04 log.46964970._001701.job.log.tgz.1
[2025-12-03 02:05:31] -rw-------. 1 boincer umatlas      7773 Dec  3 02:04 heartbeat.json
[2025-12-03 02:05:31] -rw-------. 1 boincer umatlas        95 Dec  3 02:05 pilot_heartbeat.json
[2025-12-03 02:05:31] -rw-r--r--. 1 boincer umatlas      8192 Dec  3 02:05 boinc_mmap_file
[2025-12-03 02:05:31] -rw-r--r--. 1 boincer umatlas        28 Dec  3 02:05 wrapper_checkpoint.txt
[2025-12-03 02:05:31] -rw-------. 1 boincer umatlas      4823 Dec  3 02:05 pilotlog.txt
[2025-12-03 02:05:31] -rw-------. 1 boincer umatlas   3777972 Dec  3 02:05 log.46964970._001701.job.log.1
[2025-12-03 02:05:31] -rw-------. 1 boincer umatlas       357 Dec  3 02:05 output.list
[2025-12-03 02:05:31] -rw-r--r--. 1 boincer umatlas       620 Dec  3 02:05 runtime_log
[2025-12-03 02:05:31] -rw-------. 1 boincer umatlas   4474880 Dec  3 02:05 result.tar.gz
[2025-12-03 02:05:31] -rw-------. 1 boincer umatlas       657 Dec  3 02:05 YAvKDmHKdk8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmegPKDmsFnJWo.diag
[2025-12-03 02:05:31] -rw-r--r--. 1 boincer umatlas      9338 Dec  3 02:05 runtime_log.err
[2025-12-03 02:05:31] -rw-r--r--. 1 boincer umatlas     21609 Dec  3 02:05 stderr.txt
[2025-12-03 02:05:31] HITS file was successfully produced:
[2025-12-03 02:05:31] -rw-------. 1 boincer umatlas 190403587 Dec  3 02:03 shared/HITS.pool.root.1
[2025-12-03 02:05:31]  *** Contents of shared directory: ***
[2025-12-03 02:05:31] total 456692
[2025-12-03 02:05:31] -rw-r--r--. 2 boincer umatlas 272146790 Dec  2 17:03 ATLAS.root_0
[2025-12-03 02:05:31] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 17:03 start_atlas.sh
[2025-12-03 02:05:31] -rw-r--r--. 2 boincer umatlas    589949 Dec  2 17:03 input.tar.gz
[2025-12-03 02:05:31] -rw-------. 1 boincer umatlas 190403587 Dec  3 02:03 HITS.pool.root.1
[2025-12-03 02:05:31] -rw-------. 1 boincer umatlas   4474880 Dec  3 02:05 result.tar.gz
02:05:33 (875219): run_atlas exited; CPU time 38517.595768
02:05:33 (875219): called boinc_finish(0)

</stderr_txt>
]]>

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