Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
02:01:37 (14508): wrapper (7.7.26015): starting
02:01:37 (14508): wrapper: running run_atlas (--nthreads 8)
[2025-12-03 02:01:37] Arguments: --nthreads 8
[2025-12-03 02:01:37] Threads: 8
[2025-12-03 02:01:37] Checking for CVMFS
[2025-12-03 02:01:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 02:01:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 02:01:37] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 02:01:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 02:01:38] 2.11.0.0 14441 74703 108388 153575 1 236 4062025 4096000 4583 130560 3 12799890 99.598 9620087 746 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-03 02:01:38] CVMFS is ok
[2025-12-03 02:01:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-03 02:01:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-03 02:01:38] Further information can be found at the LHC@home message board.
[2025-12-03 02:01:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 02:01:38] Checking for apptainer binary...
[2025-12-03 02:01:38] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-03 02:01:38] apptainer is not installed, using version from CVMFS
[2025-12-03 02:01:38] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 02:01:38] WARNING: Environment variable TMPDIR already has value [/tmp/job_10946220/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node057
[2025-12-03 02:01:38] apptainer works
[2025-12-03 02:01:38] Set ATHENA_PROC_NUMBER=8
[2025-12-03 02:01:38] Set ATHENA_CORE_NUMBER=8
[2025-12-03 02:01:38] Starting ATLAS job with PandaID=6897928867
[2025-12-03 02:01:38] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10946220/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 07:12:21]  *** The last 200 lines of the pilot log: ***
[2025-12-03 07:12:21] 2025-12-03 06:11:43,944 | INFO     | time since job start (18599s) is within the limit (172800.0s)
[2025-12-03 07:12:21] 2025-12-03 06:11:44,840 | INFO     | monitor loop #1361: job 0:6897928867 is in state 'finished'
[2025-12-03 07:12:21] 2025-12-03 06:11:44,840 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 07:12:21] 2025-12-03 06:11:45,631 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 07:12:21] 2025-12-03 06:11:45,631 | INFO     | job 6897928867 has state=finished
[2025-12-03 07:12:21] 2025-12-03 06:11:45,631 | INFO     | preparing for final server update for job 6897928867 in state='finished'
[2025-12-03 07:12:21] 2025-12-03 06:11:45,631 | INFO     | this job has now completed (state=finished)
[2025-12-03 07:12:21] 2025-12-03 06:11:45,631 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-03 07:12:21] 2025-12-03 06:11:45,631 | INFO     | log transfer has been attempted: DONE
[2025-12-03 07:12:21] 2025-12-03 06:11:45,632 | INFO     | job 6897928867 has finished - writing final server update
[2025-12-03 07:12:21] 2025-12-03 06:11:45,632 | INFO     | total number of processed events: 1000 (read)
[2025-12-03 07:12:21] 2025-12-03 06:11:45,632 | INFO     | executing command: lscpu
[2025-12-03 07:12:21] 2025-12-03 06:11:45,669 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-03 07:12:21] 2025-12-03 06:11:45,949 | INFO     | time since job start (18601s) is within the limit (172800.0s)
[2025-12-03 07:12:21] 2025-12-03 06:11:47,342 | INFO     | monitor loop #1362: job 0:6897928867 is in state 'finished'
[2025-12-03 07:12:21] 2025-12-03 06:11:47,343 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 07:12:21] 2025-12-03 06:11:47,912 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 07:12:21] 2025-12-03 06:11:47,918 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2348.909328125
[2025-12-03 07:12:21] 2025-12-03 06:11:47,926 | INFO     | using path: /tmp/job_10946220/atlas/pilot/slots/0/PanDA_Pilot-6897928867/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 07:12:21] 2025-12-03 06:11:47,926 | INFO     | extracted standard info from prmon json
[2025-12-03 07:12:21] 2025-12-03 06:11:47,926 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 07:12:21] 2025-12-03 06:11:47,926 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 07:12:21] 2025-12-03 06:11:47,930 | INFO     | fitting pss+swap vs Time
[2025-12-03 07:12:21] 2025-12-03 06:11:47,930 | INFO     | sum of square deviations: 8797783560.0
[2025-12-03 07:12:21] 2025-12-03 06:11:47,932 | INFO     | sum of deviations: 1716592705342.0
[2025-12-03 07:12:21] 2025-12-03 06:11:47,932 | INFO     | mean x: 1764732998.0
[2025-12-03 07:12:21] 2025-12-03 06:11:47,932 | INFO     | mean y: 4180221.104918033
[2025-12-03 07:12:21] 2025-12-03 06:11:47,932 | INFO     | intersect: -344324339636.5851
[2025-12-03 07:12:21] 2025-12-03 06:11:47,933 | INFO     | chi2: 10.495394757072802
[2025-12-03 07:12:21] 2025-12-03 06:11:47,933 | INFO     | sum of square deviations: 8372156975.0
[2025-12-03 07:12:21] 2025-12-03 06:11:47,935 | INFO     | sum of deviations: 1798404566727.5
[2025-12-03 07:12:21] 2025-12-03 06:11:47,935 | INFO     | mean x: 1764732845.5
[2025-12-03 07:12:21] 2025-12-03 06:11:47,935 | INFO     | mean y: 4209242.543333333
[2025-12-03 07:12:21] 2025-12-03 06:11:47,935 | INFO     | intersect: -379074159435.7047
[2025-12-03 07:12:21] 2025-12-03 06:11:47,935 | INFO     | chi2: 8.832271057249619
[2025-12-03 07:12:21] 2025-12-03 06:11:47,935 | INFO     | current chi2=8.832271057249619 (change=15.846223399099982 %)
[2025-12-03 07:12:21] 2025-12-03 06:11:47,935 | INFO     | right removable region: 299
[2025-12-03 07:12:21] 2025-12-03 06:11:47,935 | INFO     | sum of square deviations: 8372156975.0
[2025-12-03 07:12:21] 2025-12-03 06:11:47,937 | INFO     | sum of deviations: 1600874917496.5
[2025-12-03 07:12:21] 2025-12-03 06:11:47,937 | INFO     | mean x: 1764733150.5
[2025-12-03 07:12:21] 2025-12-03 06:11:47,937 | INFO     | mean y: 4221508.643333334
[2025-12-03 07:12:21] 2025-12-03 06:11:47,937 | INFO     | intersect: -337437735820.40283
[2025-12-03 07:12:21] 2025-12-03 06:11:47,938 | INFO     | chi2: 8.61993371092558
[2025-12-03 07:12:21] 2025-12-03 06:11:47,938 | INFO     | current chi2=8.61993371092558 (change=17.869371181902018 %)
[2025-12-03 07:12:21] 2025-12-03 06:11:47,938 | INFO     | left removable region: 10
[2025-12-03 07:12:21] 2025-12-03 06:11:47,938 | INFO     | sum of square deviations: 7484568240.0
[2025-12-03 07:12:21] 2025-12-03 06:11:47,939 | INFO     | sum of deviations: 1609548714743.9993
[2025-12-03 07:12:21] 2025-12-03 06:11:47,940 | INFO     | mean x: 1764733120.0
[2025-12-03 07:12:21] 2025-12-03 06:11:47,940 | INFO     | mean y: 4258579.85467128
[2025-12-03 07:12:21] 2025-12-03 06:11:47,940 | INFO     | intersect: -379499786821.456
[2025-12-03 07:12:21] 2025-12-03 06:11:47,940 | INFO     | chi2: 6.548488726439431
[2025-12-03 07:12:21] 2025-12-03 06:11:47,940 | INFO     | current memory leak: 215.05 B/s (using 289 data points, chi2=6.55)
[2025-12-03 07:12:21] 2025-12-03 06:11:47,940 | INFO     | could have reported an average CPU frequency of 2349 MHz (14 samples)
[2025-12-03 07:12:21] 2025-12-03 06:11:47,940 | INFO     | ..............................
[2025-12-03 07:12:21] 2025-12-03 06:11:47,940 | INFO     | . Timing measurements:
[2025-12-03 07:12:21] 2025-12-03 06:11:47,940 | INFO     | . get job = 0 s
[2025-12-03 07:12:21] 2025-12-03 06:11:47,940 | INFO     | . initial setup = 1 s
[2025-12-03 07:12:21] 2025-12-03 06:11:47,941 | INFO     | . payload setup = 5 s
[2025-12-03 07:12:21] 2025-12-03 06:11:47,941 | INFO     | . stage-in = 0 s
[2025-12-03 07:12:21] 2025-12-03 06:11:47,941 | INFO     | . payload execution = 18571 s
[2025-12-03 07:12:21] 2025-12-03 06:11:47,941 | INFO     | . stage-out = 1 s
[2025-12-03 07:12:21] 2025-12-03 06:11:47,941 | INFO     | . log creation = 0 s
[2025-12-03 07:12:21] 2025-12-03 06:11:47,941 | INFO     | ..............................
[2025-12-03 07:12:21] 2025-12-03 06:11:47,960 | INFO     | time since job start (18603s) is within the limit (172800.0s)
[2025-12-03 07:12:21] 2025-12-03 06:11:48,244 | INFO     | 
[2025-12-03 07:12:21] 2025-12-03 06:11:48,244 | INFO     | job summary report
[2025-12-03 07:12:21] 2025-12-03 06:11:48,244 | INFO     | --------------------------------------------------
[2025-12-03 07:12:21] 2025-12-03 06:11:48,244 | INFO     | PanDA job id: 6897928867
[2025-12-03 07:12:21] 2025-12-03 06:11:48,244 | INFO     | task id: 47531111
[2025-12-03 07:12:21] 2025-12-03 06:11:48,244 | INFO     | errors: (none)
[2025-12-03 07:12:21] 2025-12-03 06:11:48,244 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 07:12:21] 2025-12-03 06:11:48,244 | INFO     | pilot state: finished 
[2025-12-03 07:12:21] 2025-12-03 06:11:48,244 | INFO     | transexitcode: 0
[2025-12-03 07:12:21] 2025-12-03 06:11:48,245 | INFO     | exeerrorcode: 0
[2025-12-03 07:12:21] 2025-12-03 06:11:48,245 | INFO     | exeerrordiag: 
[2025-12-03 07:12:21] 2025-12-03 06:11:48,245 | INFO     | exitcode: 0
[2025-12-03 07:12:21] 2025-12-03 06:11:48,245 | INFO     | exitmsg: OK
[2025-12-03 07:12:21] 2025-12-03 06:11:48,245 | INFO     | cpuconsumptiontime: 141360 s
[2025-12-03 07:12:21] 2025-12-03 06:11:48,245 | INFO     | nevents: 1000
[2025-12-03 07:12:21] 2025-12-03 06:11:48,245 | INFO     | neventsw: 0
[2025-12-03 07:12:21] 2025-12-03 06:11:48,245 | INFO     | pid: 25999
[2025-12-03 07:12:21] 2025-12-03 06:11:48,245 | INFO     | pgrp: 25999
[2025-12-03 07:12:21] 2025-12-03 06:11:48,245 | INFO     | corecount: 8
[2025-12-03 07:12:21] 2025-12-03 06:11:48,245 | INFO     | event service: False
[2025-12-03 07:12:21] 2025-12-03 06:11:48,245 | INFO     | sizes: {0: 2284576, 1: 2284576, 3: 2284866, 11: 2284894, 18580: 2337812, 18583: 2346836, 18586: 2347020, 18590: 2347266}
[2025-12-03 07:12:21] 2025-12-03 06:11:48,245 | INFO     | --------------------------------------------------
[2025-12-03 07:12:21] 2025-12-03 06:11:48,245 | INFO     | 
[2025-12-03 07:12:21] 2025-12-03 06:11:48,245 | INFO     | executing command: ls -lF /tmp/job_10946220/atlas/pilot/slots/0
[2025-12-03 07:12:21] 2025-12-03 06:11:48,256 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 07:12:21] 2025-12-03 06:11:48,256 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 07:12:21] 2025-12-03 06:11:48,256 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 07:12:21] 2025-12-03 06:11:48,256 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 07:12:21] 2025-12-03 06:11:48,256 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 07:12:21] 2025-12-03 06:11:48,256 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 07:12:21] 2025-12-03 06:11:48,257 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 07:12:21] 2025-12-03 06:11:48,257 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 07:12:21] 2025-12-03 06:11:48,257 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 07:12:21] 2025-12-03 06:11:48,257 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 07:12:21] 2025-12-03 06:11:48,257 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 07:12:21] 2025-12-03 06:11:48,257 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 07:12:21] 2025-12-03 06:11:48,257 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 07:12:21] 2025-12-03 06:11:48,257 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 07:12:21] 2025-12-03 06:11:48,257 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 07:12:21] 2025-12-03 06:11:48,257 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 07:12:21] 2025-12-03 06:11:48,257 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 07:12:21] 2025-12-03 06:11:48,257 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 07:12:21] 2025-12-03 06:11:48,257 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 07:12:21] 2025-12-03 06:11:48,257 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 07:12:21] 2025-12-03 06:11:48,257 | INFO     | job 6897928867 has completed (purged errors)
[2025-12-03 07:12:21] 2025-12-03 06:11:48,257 | INFO     | overall cleanup function is called
[2025-12-03 07:12:21] 2025-12-03 06:11:49,266 | INFO     | --- collectZombieJob: --- 10, [25999]
[2025-12-03 07:12:21] 2025-12-03 06:11:49,266 | INFO     | zombie collector waiting for pid 25999
[2025-12-03 07:12:21] 2025-12-03 06:11:49,266 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 07:12:21] 2025-12-03 06:11:49,266 | INFO     | collected zombie processes
[2025-12-03 07:12:21] 2025-12-03 06:11:49,266 | INFO     | will attempt to kill all subprocesses of pid=25999
[2025-12-03 07:12:21] 2025-12-03 06:11:49,406 | INFO     | process IDs to be killed: [25999] (in reverse order)
[2025-12-03 07:12:21] 2025-12-03 06:11:49,451 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 07:12:21] 2025-12-03 06:11:49,451 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 07:12:21] 2025-12-03 06:11:49,456 | INFO     | did not find any defunct processes belonging to 25999
[2025-12-03 07:12:21] 2025-12-03 06:11:49,460 | INFO     | did not find any defunct processes belonging to 25999
[2025-12-03 07:12:21] 2025-12-03 06:11:49,461 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 07:12:21] 2025-12-03 06:11:49,461 | INFO     | ready for new job
[2025-12-03 07:12:21] 2025-12-03 06:11:49,461 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 07:12:21] 2025-12-03 06:11:49,462 | INFO     | ***************************************
[2025-12-03 07:12:21] 2025-12-03 06:11:49,462 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 07:12:21] 2025-12-03 06:11:49,462 | INFO     | ***************************************
[2025-12-03 07:12:21] 2025-12-03 06:11:49,462 | INFO     | 
[2025-12-03 07:12:21] 2025-12-03 06:11:49,477 | INFO     | architecture information:
[2025-12-03 07:12:21] 2025-12-03 06:11:49,477 | INFO     | executing command: cat /etc/os-release
[2025-12-03 07:12:21] 2025-12-03 06:11:49,484 | INFO     | cat /etc/os-release:
[2025-12-03 07:12:21] NAME="CentOS Linux"
[2025-12-03 07:12:21] VERSION="7 (Core)"
[2025-12-03 07:12:21] ID="centos"
[2025-12-03 07:12:21] ID_LIKE="rhel fedora"
[2025-12-03 07:12:21] VERSION_ID="7"
[2025-12-03 07:12:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 07:12:21] ANSI_COLOR="0;31"
[2025-12-03 07:12:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 07:12:21] HOME_URL="https://www.centos.org/"
[2025-12-03 07:12:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 07:12:21] 
[2025-12-03 07:12:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 07:12:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 07:12:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 07:12:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 07:12:21] 
[2025-12-03 07:12:21] 2025-12-03 06:11:49,484 | INFO     | ***************************************
[2025-12-03 07:12:21] 2025-12-03 06:11:49,987 | INFO     | executing command: df -mP /tmp/job_10946220/atlas/pilot/slots/0
[2025-12-03 07:12:21] 2025-12-03 06:11:49,995 | INFO     | sufficient remaining disk space (225217347584 B)
[2025-12-03 07:12:21] 2025-12-03 06:11:49,995 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 07:12:21] 2025-12-03 06:11:49,995 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 07:12:21] 2025-12-03 06:11:49,995 | INFO     | update_server=False
[2025-12-03 07:12:21] 2025-12-03 06:11:49,995 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 07:12:21] 2025-12-03 06:11:49,995 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 07:12:21] 2025-12-03 06:11:49,995 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 07:12:21] 2025-12-03 06:11:50,728 | INFO     | all data control threads have been joined
[2025-12-03 07:12:21] 2025-12-03 06:11:50,850 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 07:12:21] 2025-12-03 06:11:50,851 | INFO     | aborting loop
[2025-12-03 07:12:21] 2025-12-03 06:11:50,935 | INFO     | all payload control threads have been joined
[2025-12-03 07:12:21] 2025-12-03 06:11:51,000 | INFO     | [job] retrieve thread has finished
[2025-12-03 07:12:21] 2025-12-03 06:11:51,000 | INFO     | [job] queue monitor thread has finished
[2025-12-03 07:12:21] 2025-12-03 06:11:51,003 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 07:12:21] 2025-12-03 06:11:51,192 | INFO     | [payload] failed_post thread has finished
[2025-12-03 07:12:21] 2025-12-03 06:11:51,233 | INFO     | all job control threads have been joined
[2025-12-03 07:12:21] 2025-12-03 06:11:51,733 | INFO     | [data] control thread has finished
[2025-12-03 07:12:21] 2025-12-03 06:11:51,758 | INFO     | [data] copytool_in thread has finished
[2025-12-03 07:12:21] 2025-12-03 06:11:51,856 | INFO     | [job] job monitor thread has finished
[2025-12-03 07:12:21] 2025-12-03 06:11:51,880 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 07:12:21] 2025-12-03 06:11:51,940 | INFO     | [payload] validate_post thread has finished
[2025-12-03 07:12:21] 2025-12-03 06:11:51,940 | INFO     | [payload] control thread has finished
[2025-12-03 07:12:21] 2025-12-03 06:11:52,065 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 07:12:21] 2025-12-03 06:11:52,105 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 07:12:21] 2025-12-03 06:11:52,239 | INFO     | [job] control thread has finished
[2025-12-03 07:12:21] 2025-12-03 06:11:52,259 | INFO     | [job] validate thread has finished
[2025-12-03 07:12:21] 2025-12-03 06:11:52,459 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 07:12:21] 2025-12-03 06:11:53,008 | INFO     | [data] copytool_out thread has finished
[2025-12-03 07:12:21] 2025-12-03 06:11:54,001 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 07:12:21] 2025-12-03 06:12:15,148 | INFO     | [monitor] cgroup control has ended
[2025-12-03 07:12:21] 2025-12-03 06:12:15,247 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456065021696)>']
[2025-12-03 07:12:21] 2025-12-03 06:12:20,272 | INFO     | all workflow threads have been joined
[2025-12-03 07:12:21] 2025-12-03 06:12:20,273 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 07:12:21] 2025-12-03 06:12:20,273 | INFO     | traces error code: 0
[2025-12-03 07:12:21] 2025-12-03 06:12:20,273 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 07:12:21] 2025-12-03 06:12:21,210 | INFO     | PID=18373 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-03 07:12:21] 2025-12-03 06:12:21,210 | INFO     | .. there are 3 such processes running
[2025-12-03 07:12:21] 2025-12-03 06:12:21,210 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 07:12:21] 2025-12-03 06:12:21,210 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 07:12:21] 2025-12-03 06:12:21,210 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 07:12:21] 2025-12-03 06:12:21,210 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 07:12:21] 2025-12-03 06:12:21,211 | INFO     | [monitor] control thread has ended
[2025-12-03 07:12:21] 2025-12-03 06:12:21,275 [wrapper] ==== pilot stdout END ====
[2025-12-03 07:12:21] 2025-12-03 06:12:21,277 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 07:12:21] 2025-12-03 06:12:21,279 [wrapper] pilotpid: 18373
[2025-12-03 07:12:21] 2025-12-03 06:12:21,280 [wrapper] Pilot exit status: 0
[2025-12-03 07:12:21] 2025-12-03 06:12:21,286 [wrapper] pandaids: 6897928867
[2025-12-03 07:12:21] 2025-12-03 06:12:21,315 [wrapper] cleanup supervisor_pilot  4211 18374
[2025-12-03 07:12:21] 2025-12-03 06:12:21,316 [wrapper] Test setup, not cleaning
[2025-12-03 07:12:21] 2025-12-03 06:12:21,318 [wrapper] apfmon messages muted
[2025-12-03 07:12:21] 2025-12-03 06:12:21,319 [wrapper] ==== wrapper stdout END ====
[2025-12-03 07:12:21] 2025-12-03 06:12:21,321 [wrapper] ==== wrapper stderr END ====
[2025-12-03 07:12:21]  *** Error codes and diagnostics ***
[2025-12-03 07:12:21]     "exeErrorCode": 0,
[2025-12-03 07:12:21]     "exeErrorDiag": "",
[2025-12-03 07:12:21]     "pilotErrorCode": 0,
[2025-12-03 07:12:21]     "pilotErrorDiag": "",
[2025-12-03 07:12:21]  *** Listing of results directory ***
[2025-12-03 07:12:21] total 1072332
[2025-12-03 07:12:21] -rw------- 1 mf493845 unix-user    576529 Nov 28 23:41 pilot3.tar.gz
[2025-12-03 07:12:21] -rwx------ 1 mf493845 unix-user     36292 Nov 28 23:46 runpilot2-wrapper.sh
[2025-12-03 07:12:21] -rw------- 1 mf493845 unix-user      5112 Nov 28 23:49 queuedata.json
[2025-12-03 07:12:21] -rw------- 1 mf493845 unix-user       100 Dec  3 00:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 07:12:21] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  3 00:25 run_atlas
[2025-12-03 07:12:21] -rw------- 1 mf493845 unix-user       105 Dec  3 00:25 job.xml
[2025-12-03 07:12:21] -rw-r--r-- 2 mf493845 unix-user 378659019 Dec  3 02:01 EVNT.47531104._000022.pool.root.1
[2025-12-03 07:12:21] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 02:01 start_atlas.sh
[2025-12-03 07:12:21] drwxrwx--x 2 mf493845 unix-user       100 Dec  3 02:01 shared
[2025-12-03 07:12:21] -rw-r--r-- 2 mf493845 unix-user    590123 Dec  3 02:01 input.tar.gz
[2025-12-03 07:12:21] -rw------- 1 mf493845 unix-user      6390 Dec  3 02:01 init_data.xml
[2025-12-03 07:12:21] -rw------- 1 mf493845 unix-user         0 Dec  3 02:01 boinc_setup_complete
[2025-12-03 07:12:21] -rw------- 1 mf493845 unix-user      8192 Dec  3 02:01 boinc_mmap_file
[2025-12-03 07:12:21] -rw------- 1 mf493845 unix-user         0 Dec  3 02:01 boinc_lockfile
[2025-12-03 07:12:21] -rw------- 1 mf493845 unix-user      2879 Dec  3 02:01 pandaJob.out
[2025-12-03 07:12:21] -rw------- 1 mf493845 unix-user    989284 Dec  3 02:01 agis_schedconf.cvmfs.json
[2025-12-03 07:12:21] drwx------ 5 mf493845 unix-user       440 Dec  3 02:01 pilot3
[2025-12-03 07:12:21] -rw------- 1 mf493845 unix-user 706784372 Dec  3 07:11 HITS.47531111._000147.pool.root.1
[2025-12-03 07:12:21] -rw------- 1 mf493845 unix-user      1030 Dec  3 07:11 memory_monitor_summary.json
[2025-12-03 07:12:21] -rw------- 1 mf493845 unix-user   1516240 Dec  3 07:11 agis_ddmendpoints.agis.ALL.json
[2025-12-03 07:12:21] -rw------- 1 mf493845 unix-user   1691217 Dec  3 07:11 log.47531111._000147.job.log.tgz.1
[2025-12-03 07:12:21] -rw------- 1 mf493845 unix-user     28105 Dec  3 07:11 heartbeat.json
[2025-12-03 07:12:21] -rw------- 1 mf493845 unix-user        95 Dec  3 07:12 pilot_heartbeat.json
[2025-12-03 07:12:21] -rw------- 1 mf493845 unix-user       820 Dec  3 07:12 pilotlog.txt
[2025-12-03 07:12:21] -rw------- 1 mf493845 unix-user   2662151 Dec  3 07:12 log.47531111._000147.job.log.1
[2025-12-03 07:12:21] -rw------- 1 mf493845 unix-user       353 Dec  3 07:12 output.list
[2025-12-03 07:12:21] -rw------- 1 mf493845 unix-user       620 Dec  3 07:12 runtime_log
[2025-12-03 07:12:21] -rw------- 1 mf493845 unix-user   4392960 Dec  3 07:12 result.tar.gz
[2025-12-03 07:12:21] -rw------- 1 mf493845 unix-user      9221 Dec  3 07:12 runtime_log.err
[2025-12-03 07:12:21] -rw------- 1 mf493845 unix-user       651 Dec  3 07:12 K5WKDmaPMj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmYdLKDmo6ZaXm.diag
[2025-12-03 07:12:21] -rw------- 1 mf493845 unix-user     22223 Dec  3 07:12 stderr.txt
[2025-12-03 07:12:21] HITS file was successfully produced:
[2025-12-03 07:12:21] -rw------- 1 mf493845 unix-user 706784372 Dec  3 07:11 shared/HITS.pool.root.1
[2025-12-03 07:12:21]  *** Contents of shared directory: ***
[2025-12-03 07:12:21] total 1064896
[2025-12-03 07:12:21] -rw-r--r-- 2 mf493845 unix-user 378659019 Dec  3 02:01 ATLAS.root_0
[2025-12-03 07:12:21] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 02:01 start_atlas.sh
[2025-12-03 07:12:21] -rw-r--r-- 2 mf493845 unix-user    590123 Dec  3 02:01 input.tar.gz
[2025-12-03 07:12:21] -rw------- 1 mf493845 unix-user 706784372 Dec  3 07:11 HITS.pool.root.1
[2025-12-03 07:12:21] -rw------- 1 mf493845 unix-user   4392960 Dec  3 07:12 result.tar.gz
07:12:22 (14508): run_atlas exited; CPU time 141635.457401
07:12:22 (14508): called boinc_finish(0)

</stderr_txt>
]]>

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