Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
01:59:09 (16034): wrapper (7.7.26015): starting
01:59:09 (16034): wrapper: running run_atlas (--nthreads 8)
[2025-12-03 01:59:09] Arguments: --nthreads 8
[2025-12-03 01:59:09] Threads: 8
[2025-12-03 01:59:09] Checking for CVMFS
[2025-12-03 01:59:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 01:59:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 01:59:09] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 01:59:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 01:59:10] 2.11.0.0 4686 74940 113080 153575 3 112 3813074 4096000 5418 130560 0 13464491 99.777 5594120 552 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-03 01:59:10] CVMFS is ok
[2025-12-03 01:59:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-03 01:59:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-03 01:59:10] Further information can be found at the LHC@home message board.
[2025-12-03 01:59:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 01:59:10] Checking for apptainer binary...
[2025-12-03 01:59:10] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-03 01:59:10] apptainer is not installed, using version from CVMFS
[2025-12-03 01:59:10] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 01:59:10] WARNING: Environment variable TMPDIR already has value [/tmp/job_10946213/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node019
[2025-12-03 01:59:10] apptainer works
[2025-12-03 01:59:10] Set ATHENA_PROC_NUMBER=8
[2025-12-03 01:59:10] Set ATHENA_CORE_NUMBER=8
[2025-12-03 01:59:10] Starting ATLAS job with PandaID=6897928749
[2025-12-03 01:59:10] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10946213/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 06:16:10]  *** The last 200 lines of the pilot log: ***
[2025-12-03 06:16:10] 2025-12-03 05:15:37,042 | INFO     | monitor loop #1089: job 0:6897928749 is in state 'finished'
[2025-12-03 06:16:10] 2025-12-03 05:15:37,042 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 06:16:10] 2025-12-03 05:15:37,186 | INFO     | time since job start (15381s) is within the limit (172800.0s)
[2025-12-03 06:16:10] 2025-12-03 05:15:38,372 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 06:16:10] 2025-12-03 05:15:38,380 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2451.2580078125
[2025-12-03 06:16:10] 2025-12-03 05:15:38,391 | INFO     | using path: /tmp/job_10946213/atlas/pilot/slots/0/PanDA_Pilot-6897928749/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 06:16:10] 2025-12-03 05:15:38,391 | INFO     | extracted standard info from prmon json
[2025-12-03 06:16:10] 2025-12-03 05:15:38,391 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 06:16:10] 2025-12-03 05:15:38,391 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 06:16:10] 2025-12-03 05:15:38,394 | INFO     | fitting pss+swap vs Time
[2025-12-03 06:16:10] 2025-12-03 05:15:38,394 | INFO     | sum of square deviations: 4962187923.0
[2025-12-03 06:16:10] 2025-12-03 05:15:38,395 | INFO     | sum of deviations: 133777646705.49997
[2025-12-03 06:16:10] 2025-12-03 05:15:38,395 | INFO     | mean x: 1764731233.5
[2025-12-03 06:16:10] 2025-12-03 05:15:38,395 | INFO     | mean y: 3405723.2103174604
[2025-12-03 06:16:10] 2025-12-03 05:15:38,395 | INFO     | intersect: -47572702870.15304
[2025-12-03 06:16:10] 2025-12-03 05:15:38,395 | INFO     | chi2: 3.0864007874401866
[2025-12-03 06:16:10] 2025-12-03 05:15:38,396 | INFO     | sum of square deviations: 4672638308.0
[2025-12-03 06:16:10] 2025-12-03 05:15:38,396 | INFO     | sum of deviations: 178246704259.0
[2025-12-03 06:16:10] 2025-12-03 05:15:38,396 | INFO     | mean x: 1764731081.0
[2025-12-03 06:16:10] 2025-12-03 05:15:38,397 | INFO     | mean y: 3428887.4696356277
[2025-12-03 06:16:10] 2025-12-03 05:15:38,397 | INFO     | intersect: -67315605533.21731
[2025-12-03 06:16:10] 2025-12-03 05:15:38,397 | INFO     | chi2: 1.8096318460007588
[2025-12-03 06:16:10] 2025-12-03 05:15:38,397 | INFO     | current chi2=1.8096318460007588 (change=41.36756790093876 %)
[2025-12-03 06:16:10] 2025-12-03 05:15:38,397 | INFO     | sum of square deviations: 4394577280.5
[2025-12-03 06:16:10] 2025-12-03 05:15:38,398 | INFO     | sum of deviations: 170877770790.99997
[2025-12-03 06:16:10] 2025-12-03 05:15:38,398 | INFO     | mean x: 1764730928.5
[2025-12-03 06:16:10] 2025-12-03 05:15:38,398 | INFO     | mean y: 3424845.7190082646
[2025-12-03 06:16:10] 2025-12-03 05:15:38,398 | INFO     | intersect: -68615982178.04411
[2025-12-03 06:16:10] 2025-12-03 05:15:38,398 | INFO     | chi2: 1.8096785578510584
[2025-12-03 06:16:10] 2025-12-03 05:15:38,398 | INFO     | current chi2=1.8096785578510584 (change=-0.002581290244356475 %)
[2025-12-03 06:16:10] 2025-12-03 05:15:38,398 | INFO     | right removable region: 241
[2025-12-03 06:16:10] 2025-12-03 05:15:38,398 | INFO     | sum of square deviations: 4672638308.0
[2025-12-03 06:16:10] 2025-12-03 05:15:38,399 | INFO     | sum of deviations: 68940724226.99998
[2025-12-03 06:16:10] 2025-12-03 05:15:38,399 | INFO     | mean x: 1764731386.0
[2025-12-03 06:16:10] 2025-12-03 05:15:38,399 | INFO     | mean y: 3439612.6072874493
[2025-12-03 06:16:10] 2025-12-03 05:15:38,399 | INFO     | intersect: -26033640896.847256
[2025-12-03 06:16:10] 2025-12-03 05:15:38,400 | INFO     | chi2: 1.3199120979022443
[2025-12-03 06:16:10] 2025-12-03 05:15:38,400 | INFO     | current chi2=1.3199120979022443 (change=57.234585240079625 %)
[2025-12-03 06:16:10] 2025-12-03 05:15:38,400 | INFO     | sum of square deviations: 4394577280.5
[2025-12-03 06:16:10] 2025-12-03 05:15:38,401 | INFO     | sum of deviations: 61600334458.5
[2025-12-03 06:16:10] 2025-12-03 05:15:38,401 | INFO     | mean x: 1764731538.5
[2025-12-03 06:16:10] 2025-12-03 05:15:38,401 | INFO     | mean y: 3443628.0454545454
[2025-12-03 06:16:10] 2025-12-03 05:15:38,401 | INFO     | intersect: -24733418659.80919
[2025-12-03 06:16:10] 2025-12-03 05:15:38,401 | INFO     | chi2: 1.3181530744465366
[2025-12-03 06:16:10] 2025-12-03 05:15:38,401 | INFO     | current chi2=1.3181530744465366 (change=0.1332682273693306 %)
[2025-12-03 06:16:10] 2025-12-03 05:15:38,401 | INFO     | left removable region: 20
[2025-12-03 06:16:10] 2025-12-03 05:15:38,401 | INFO     | sum of square deviations: 3346927870.0
[2025-12-03 06:16:10] 2025-12-03 05:15:38,402 | INFO     | sum of deviations: 85639347042.0
[2025-12-03 06:16:10] 2025-12-03 05:15:38,402 | INFO     | mean x: 1764731508.0
[2025-12-03 06:16:10] 2025-12-03 05:15:38,402 | INFO     | mean y: 3473103.28959276
[2025-12-03 06:16:10] 2025-12-03 05:15:38,402 | INFO     | intersect: -45151504810.699326
[2025-12-03 06:16:10] 2025-12-03 05:15:38,402 | INFO     | chi2: 0.010247349744926654
[2025-12-03 06:16:10] 2025-12-03 05:15:38,402 | INFO     | current memory leak: 25.59 B/s (using 221 data points, chi2=0.01)
[2025-12-03 06:16:10] 2025-12-03 05:15:38,403 | INFO     | could have reported an average CPU frequency of 2528 MHz (12 samples)
[2025-12-03 06:16:10] 2025-12-03 05:15:38,403 | INFO     | ..............................
[2025-12-03 06:16:10] 2025-12-03 05:15:38,403 | INFO     | . Timing measurements:
[2025-12-03 06:16:10] 2025-12-03 05:15:38,403 | INFO     | . get job = 0 s
[2025-12-03 06:16:10] 2025-12-03 05:15:38,403 | INFO     | . initial setup = 1 s
[2025-12-03 06:16:10] 2025-12-03 05:15:38,403 | INFO     | . payload setup = 5 s
[2025-12-03 06:16:10] 2025-12-03 05:15:38,403 | INFO     | . stage-in = 0 s
[2025-12-03 06:16:10] 2025-12-03 05:15:38,403 | INFO     | . payload execution = 15353 s
[2025-12-03 06:16:10] 2025-12-03 05:15:38,403 | INFO     | . stage-out = 1 s
[2025-12-03 06:16:10] 2025-12-03 05:15:38,403 | INFO     | . log creation = 0 s
[2025-12-03 06:16:10] 2025-12-03 05:15:38,403 | INFO     | ..............................
[2025-12-03 06:16:10] 2025-12-03 05:15:38,735 | INFO     | 
[2025-12-03 06:16:10] 2025-12-03 05:15:38,735 | INFO     | job summary report
[2025-12-03 06:16:10] 2025-12-03 05:15:38,736 | INFO     | --------------------------------------------------
[2025-12-03 06:16:10] 2025-12-03 05:15:38,736 | INFO     | PanDA job id: 6897928749
[2025-12-03 06:16:10] 2025-12-03 05:15:38,736 | INFO     | task id: 47531111
[2025-12-03 06:16:10] 2025-12-03 05:15:38,736 | INFO     | errors: (none)
[2025-12-03 06:16:10] 2025-12-03 05:15:38,736 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 06:16:10] 2025-12-03 05:15:38,736 | INFO     | pilot state: finished 
[2025-12-03 06:16:10] 2025-12-03 05:15:38,736 | INFO     | transexitcode: 0
[2025-12-03 06:16:10] 2025-12-03 05:15:38,736 | INFO     | exeerrorcode: 0
[2025-12-03 06:16:10] 2025-12-03 05:15:38,736 | INFO     | exeerrordiag: 
[2025-12-03 06:16:10] 2025-12-03 05:15:38,736 | INFO     | exitcode: 0
[2025-12-03 06:16:10] 2025-12-03 05:15:38,736 | INFO     | exitmsg: OK
[2025-12-03 06:16:10] 2025-12-03 05:15:38,736 | INFO     | cpuconsumptiontime: 118582 s
[2025-12-03 06:16:10] 2025-12-03 05:15:38,736 | INFO     | nevents: 1000
[2025-12-03 06:16:10] 2025-12-03 05:15:38,736 | INFO     | neventsw: 0
[2025-12-03 06:16:10] 2025-12-03 05:15:38,736 | INFO     | pid: 30519
[2025-12-03 06:16:10] 2025-12-03 05:15:38,736 | INFO     | pgrp: 30519
[2025-12-03 06:16:10] 2025-12-03 05:15:38,736 | INFO     | corecount: 8
[2025-12-03 06:16:10] 2025-12-03 05:15:38,736 | INFO     | event service: False
[2025-12-03 06:16:10] 2025-12-03 05:15:38,736 | INFO     | sizes: {0: 2284572, 3: 2284834, 11: 2284862, 15362: 2335607, 15363: 2335634, 15365: 2344898, 15369: 2345088}
[2025-12-03 06:16:10] 2025-12-03 05:15:38,736 | INFO     | --------------------------------------------------
[2025-12-03 06:16:10] 2025-12-03 05:15:38,736 | INFO     | 
[2025-12-03 06:16:10] 2025-12-03 05:15:38,736 | INFO     | executing command: ls -lF /tmp/job_10946213/atlas/pilot/slots/0
[2025-12-03 06:16:10] 2025-12-03 05:15:38,747 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 06:16:10] 2025-12-03 05:15:38,747 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 06:16:10] 2025-12-03 05:15:38,747 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 06:16:10] 2025-12-03 05:15:38,747 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 06:16:10] 2025-12-03 05:15:38,747 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 06:16:10] 2025-12-03 05:15:38,747 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 06:16:10] 2025-12-03 05:15:38,747 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 06:16:10] 2025-12-03 05:15:38,747 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 06:16:10] 2025-12-03 05:15:38,747 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 06:16:10] 2025-12-03 05:15:38,748 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 06:16:10] 2025-12-03 05:15:38,748 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 06:16:10] 2025-12-03 05:15:38,748 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 06:16:10] 2025-12-03 05:15:38,748 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 06:16:10] 2025-12-03 05:15:38,748 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 06:16:10] 2025-12-03 05:15:38,748 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 06:16:10] 2025-12-03 05:15:38,748 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 06:16:10] 2025-12-03 05:15:38,748 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 06:16:10] 2025-12-03 05:15:38,748 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 06:16:10] 2025-12-03 05:15:38,748 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 06:16:10] 2025-12-03 05:15:38,748 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 06:16:10] 2025-12-03 05:15:38,748 | INFO     | job 6897928749 has completed (purged errors)
[2025-12-03 06:16:10] 2025-12-03 05:15:38,748 | INFO     | overall cleanup function is called
[2025-12-03 06:16:10] 2025-12-03 05:15:39,755 | INFO     | --- collectZombieJob: --- 10, [30519]
[2025-12-03 06:16:10] 2025-12-03 05:15:39,756 | INFO     | zombie collector waiting for pid 30519
[2025-12-03 06:16:10] 2025-12-03 05:15:39,756 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 06:16:10] 2025-12-03 05:15:39,756 | INFO     | collected zombie processes
[2025-12-03 06:16:10] 2025-12-03 05:15:39,756 | INFO     | will attempt to kill all subprocesses of pid=30519
[2025-12-03 06:16:10] 2025-12-03 05:15:39,917 | INFO     | process IDs to be killed: [30519] (in reverse order)
[2025-12-03 06:16:10] 2025-12-03 05:15:39,967 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 06:16:10] 2025-12-03 05:15:39,967 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 06:16:10] 2025-12-03 05:15:39,973 | INFO     | did not find any defunct processes belonging to 30519
[2025-12-03 06:16:10] 2025-12-03 05:15:39,978 | INFO     | did not find any defunct processes belonging to 30519
[2025-12-03 06:16:10] 2025-12-03 05:15:39,978 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 06:16:10] 2025-12-03 05:15:39,978 | INFO     | ready for new job
[2025-12-03 06:16:10] 2025-12-03 05:15:39,978 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 06:16:10] 2025-12-03 05:15:39,979 | INFO     | ***************************************
[2025-12-03 06:16:10] 2025-12-03 05:15:39,979 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 06:16:10] 2025-12-03 05:15:39,979 | INFO     | ***************************************
[2025-12-03 06:16:10] 2025-12-03 05:15:39,979 | INFO     | 
[2025-12-03 06:16:10] 2025-12-03 05:15:39,995 | INFO     | architecture information:
[2025-12-03 06:16:10] 2025-12-03 05:15:39,995 | INFO     | executing command: cat /etc/os-release
[2025-12-03 06:16:10] 2025-12-03 05:15:40,003 | INFO     | cat /etc/os-release:
[2025-12-03 06:16:10] NAME="CentOS Linux"
[2025-12-03 06:16:10] VERSION="7 (Core)"
[2025-12-03 06:16:10] ID="centos"
[2025-12-03 06:16:10] ID_LIKE="rhel fedora"
[2025-12-03 06:16:10] VERSION_ID="7"
[2025-12-03 06:16:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 06:16:10] ANSI_COLOR="0;31"
[2025-12-03 06:16:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 06:16:10] HOME_URL="https://www.centos.org/"
[2025-12-03 06:16:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 06:16:10] 
[2025-12-03 06:16:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 06:16:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 06:16:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 06:16:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 06:16:10] 
[2025-12-03 06:16:10] 2025-12-03 05:15:40,003 | INFO     | ***************************************
[2025-12-03 06:16:10] 2025-12-03 05:15:40,506 | INFO     | executing command: df -mP /tmp/job_10946213/atlas/pilot/slots/0
[2025-12-03 06:16:10] 2025-12-03 05:15:40,513 | INFO     | sufficient remaining disk space (223271190528 B)
[2025-12-03 06:16:10] 2025-12-03 05:15:40,513 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 06:16:10] 2025-12-03 05:15:40,513 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 06:16:10] 2025-12-03 05:15:40,513 | INFO     | update_server=False
[2025-12-03 06:16:10] 2025-12-03 05:15:40,513 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 06:16:10] 2025-12-03 05:15:40,513 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 06:16:10] 2025-12-03 05:15:40,525 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 06:16:10] 2025-12-03 05:15:40,550 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 06:16:10] 2025-12-03 05:15:40,550 | INFO     | aborting loop
[2025-12-03 06:16:10] 2025-12-03 05:15:41,153 | INFO     | all job control threads have been joined
[2025-12-03 06:16:10] 2025-12-03 05:15:41,518 | INFO     | [job] retrieve thread has finished
[2025-12-03 06:16:10] 2025-12-03 05:15:41,546 | INFO     | all data control threads have been joined
[2025-12-03 06:16:10] 2025-12-03 05:15:41,556 | INFO     | [job] job monitor thread has finished
[2025-12-03 06:16:10] 2025-12-03 05:15:41,809 | INFO     | [monitor] cgroup control has ended
[2025-12-03 06:16:10] 2025-12-03 05:15:41,831 | INFO     | all payload control threads have been joined
[2025-12-03 06:16:10] 2025-12-03 05:15:41,965 | INFO     | [data] copytool_in thread has finished
[2025-12-03 06:16:10] 2025-12-03 05:15:42,158 | INFO     | [job] control thread has finished
[2025-12-03 06:16:10] 2025-12-03 05:15:42,322 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 06:16:10] 2025-12-03 05:15:42,518 | INFO     | [data] copytool_out thread has finished
[2025-12-03 06:16:10] 2025-12-03 05:15:42,544 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 06:16:10] 2025-12-03 05:15:42,551 | INFO     | [data] control thread has finished
[2025-12-03 06:16:10] 2025-12-03 05:15:42,745 | INFO     | [payload] validate_post thread has finished
[2025-12-03 06:16:10] 2025-12-03 05:15:42,750 | INFO     | [job] validate thread has finished
[2025-12-03 06:16:10] 2025-12-03 05:15:42,807 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 06:16:10] 2025-12-03 05:15:42,836 | INFO     | [payload] control thread has finished
[2025-12-03 06:16:10] 2025-12-03 05:15:42,983 | INFO     | [payload] failed_post thread has finished
[2025-12-03 06:16:10] 2025-12-03 05:15:43,014 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 06:16:10] 2025-12-03 05:15:43,464 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 06:16:10] 2025-12-03 05:15:44,469 | INFO     | [job] queue monitor thread has finished
[2025-12-03 06:16:10] 2025-12-03 05:15:44,530 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 06:16:10] 2025-12-03 05:15:46,032 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456060819200)>']
[2025-12-03 06:16:10] 2025-12-03 05:15:51,050 | INFO     | all workflow threads have been joined
[2025-12-03 06:16:10] 2025-12-03 05:15:51,051 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 06:16:10] 2025-12-03 05:15:51,051 | INFO     | traces error code: 0
[2025-12-03 06:16:10] 2025-12-03 05:15:51,051 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 06:16:10] 2025-12-03 05:16:10,454 | INFO     | PID=20988 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-03 06:16:10] 2025-12-03 05:16:10,454 | INFO     | .. there are 3 such processes running
[2025-12-03 06:16:10] 2025-12-03 05:16:10,454 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 06:16:10] 2025-12-03 05:16:10,454 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 06:16:10] 2025-12-03 05:16:10,454 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 06:16:10] 2025-12-03 05:16:10,454 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 06:16:10] 2025-12-03 05:16:10,454 | INFO     | [monitor] control thread has ended
[2025-12-03 06:16:10] 2025-12-03 05:16:10,515 [wrapper] ==== pilot stdout END ====
[2025-12-03 06:16:10] 2025-12-03 05:16:10,517 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 06:16:10] 2025-12-03 05:16:10,518 [wrapper] pilotpid: 20988
[2025-12-03 06:16:10] 2025-12-03 05:16:10,520 [wrapper] Pilot exit status: 0
[2025-12-03 06:16:10] 2025-12-03 05:16:10,524 [wrapper] pandaids: 6897928749
[2025-12-03 06:16:10] 2025-12-03 05:16:10,558 [wrapper] cleanup supervisor_pilot  7459 20989
[2025-12-03 06:16:10] 2025-12-03 05:16:10,560 [wrapper] Test setup, not cleaning
[2025-12-03 06:16:10] 2025-12-03 05:16:10,561 [wrapper] apfmon messages muted
[2025-12-03 06:16:10] 2025-12-03 05:16:10,562 [wrapper] ==== wrapper stdout END ====
[2025-12-03 06:16:10] 2025-12-03 05:16:10,564 [wrapper] ==== wrapper stderr END ====
[2025-12-03 06:16:10]  *** Error codes and diagnostics ***
[2025-12-03 06:16:10]     "exeErrorCode": 0,
[2025-12-03 06:16:10]     "exeErrorDiag": "",
[2025-12-03 06:16:10]     "pilotErrorCode": 0,
[2025-12-03 06:16:10]     "pilotErrorDiag": "",
[2025-12-03 06:16:10]  *** Listing of results directory ***
[2025-12-03 06:16:10] total 1081500
[2025-12-03 06:16:10] -rw------- 1 mf493845 unix-user    576529 Nov 28 23:41 pilot3.tar.gz
[2025-12-03 06:16:10] -rwx------ 1 mf493845 unix-user     36292 Nov 28 23:46 runpilot2-wrapper.sh
[2025-12-03 06:16:10] -rw------- 1 mf493845 unix-user      5112 Nov 28 23:49 queuedata.json
[2025-12-03 06:16:10] -rw------- 1 mf493845 unix-user       100 Dec  3 00:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 06:16:10] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  3 00:22 run_atlas
[2025-12-03 06:16:10] -rw------- 1 mf493845 unix-user       105 Dec  3 00:22 job.xml
[2025-12-03 06:16:10] -rw-r--r-- 2 mf493845 unix-user 380430747 Dec  3 01:59 EVNT.47531104._000003.pool.root.1
[2025-12-03 06:16:10] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 01:59 start_atlas.sh
[2025-12-03 06:16:10] drwxrwx--x 2 mf493845 unix-user       100 Dec  3 01:59 shared
[2025-12-03 06:16:10] -rw-r--r-- 2 mf493845 unix-user    590123 Dec  3 01:59 input.tar.gz
[2025-12-03 06:16:10] -rw------- 1 mf493845 unix-user      6388 Dec  3 01:59 init_data.xml
[2025-12-03 06:16:10] -rw------- 1 mf493845 unix-user         0 Dec  3 01:59 boinc_setup_complete
[2025-12-03 06:16:10] -rw------- 1 mf493845 unix-user      8192 Dec  3 01:59 boinc_mmap_file
[2025-12-03 06:16:10] -rw------- 1 mf493845 unix-user         0 Dec  3 01:59 boinc_lockfile
[2025-12-03 06:16:10] -rw------- 1 mf493845 unix-user      2877 Dec  3 01:59 pandaJob.out
[2025-12-03 06:16:10] -rw------- 1 mf493845 unix-user    989284 Dec  3 01:59 agis_schedconf.cvmfs.json
[2025-12-03 06:16:10] drwx------ 5 mf493845 unix-user       440 Dec  3 01:59 pilot3
[2025-12-03 06:16:10] -rw------- 1 mf493845 unix-user        95 Dec  3 06:15 pilot_heartbeat.json
[2025-12-03 06:16:10] -rw------- 1 mf493845 unix-user 715460108 Dec  3 06:15 HITS.47531111._000064.pool.root.1
[2025-12-03 06:16:10] -rw------- 1 mf493845 unix-user      1031 Dec  3 06:15 memory_monitor_summary.json
[2025-12-03 06:16:10] -rw------- 1 mf493845 unix-user   1516240 Dec  3 06:15 agis_ddmendpoints.agis.ALL.json
[2025-12-03 06:16:10] -rw------- 1 mf493845 unix-user   1655028 Dec  3 06:15 log.47531111._000064.job.log.tgz.1
[2025-12-03 06:16:10] -rw------- 1 mf493845 unix-user     27620 Dec  3 06:15 heartbeat.json
[2025-12-03 06:16:10] -rw------- 1 mf493845 unix-user       820 Dec  3 06:16 pilotlog.txt
[2025-12-03 06:16:10] -rw------- 1 mf493845 unix-user   2170797 Dec  3 06:16 log.47531111._000064.job.log.1
[2025-12-03 06:16:10] -rw------- 1 mf493845 unix-user       353 Dec  3 06:16 output.list
[2025-12-03 06:16:10] -rw------- 1 mf493845 unix-user       620 Dec  3 06:16 runtime_log
[2025-12-03 06:16:10] -rw------- 1 mf493845 unix-user   3860480 Dec  3 06:16 result.tar.gz
[2025-12-03 06:16:10] -rw------- 1 mf493845 unix-user       651 Dec  3 06:16 S36NDmZPMj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm6cLKDmLu8ZNn.diag
[2025-12-03 06:16:10] -rw------- 1 mf493845 unix-user      9221 Dec  3 06:16 runtime_log.err
[2025-12-03 06:16:10] -rw------- 1 mf493845 unix-user     21719 Dec  3 06:16 stderr.txt
[2025-12-03 06:16:10] HITS file was successfully produced:
[2025-12-03 06:16:10] -rw------- 1 mf493845 unix-user 715460108 Dec  3 06:15 shared/HITS.pool.root.1
[2025-12-03 06:16:10]  *** Contents of shared directory: ***
[2025-12-03 06:16:10] total 1074576
[2025-12-03 06:16:10] -rw-r--r-- 2 mf493845 unix-user 380430747 Dec  3 01:59 ATLAS.root_0
[2025-12-03 06:16:10] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 01:59 start_atlas.sh
[2025-12-03 06:16:10] -rw-r--r-- 2 mf493845 unix-user    590123 Dec  3 01:59 input.tar.gz
[2025-12-03 06:16:10] -rw------- 1 mf493845 unix-user 715460108 Dec  3 06:15 HITS.pool.root.1
[2025-12-03 06:16:10] -rw------- 1 mf493845 unix-user   3860480 Dec  3 06:16 result.tar.gz
06:16:11 (16034): run_atlas exited; CPU time 118886.900249
06:16:11 (16034): called boinc_finish(0)

</stderr_txt>
]]>

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