Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:31:00 (972899): wrapper (7.7.26015): starting
18:31:00 (972899): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 18:31:00] Arguments: --nthreads 8
[2025-12-02 18:31:00] Threads: 8
[2025-12-02 18:31:00] Checking for CVMFS
[2025-12-02 18:31:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 18:31:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 18:31:01] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 18:31:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 18:31:02] 2.13.2.0 1657905 39561 225424 153574 2 197 40187457 40960000 41538 16776704 0 457721575 99.692 363446510 48444 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-02 18:31:02] CVMFS is ok
[2025-12-02 18:31:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 18:31:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 18:31:02] Further information can be found at the LHC@home message board.
[2025-12-02 18:31:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 18:31:02] Checking for apptainer binary...
[2025-12-02 18:31:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 18:31:02] Running /usr/bin/apptainer --version
[2025-12-02 18:31:02] apptainer version 1.4.4-1.el9
[2025-12-02 18:31:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 18:31:03] c-208-39.aglt2.org
[2025-12-02 18:31:03] apptainer works
[2025-12-02 18:31:03] Set ATHENA_PROC_NUMBER=8
[2025-12-02 18:31:03] Set ATHENA_CORE_NUMBER=8
[2025-12-02 18:31:03] Starting ATLAS job with PandaID=6895362293
[2025-12-02 18:31:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
23:00:03 (972899): BOINC client no longer exists - exiting
23:00:03 (972899): timer handler: client dead, exiting
23:36:29 (3584632): wrapper (7.7.26015): starting
23:36:29 (3584632): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 23:36:29] Arguments: --nthreads 8
[2025-12-02 23:36:29] Threads: 8
[2025-12-02 23:36:29] This job has been restarted, cleaning up previous attempt
[2025-12-02 23:36:29] Checking for CVMFS
[2025-12-02 23:36:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 23:36:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 23:36:31] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 23:36:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 23:36:32] 2.13.2.0 1657905 39866 264472 153581 1 740 24868417 40960000 31475 16776704 0 460173829 99.693 364327587 48430 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-02 23:36:32] CVMFS is ok
[2025-12-02 23:36:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 23:36:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 23:36:32] Further information can be found at the LHC@home message board.
[2025-12-02 23:36:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 23:36:32] Checking for apptainer binary...
[2025-12-02 23:36:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 23:36:32] Running /usr/bin/apptainer --version
[2025-12-02 23:36:32] apptainer version 1.4.4-1.el9
[2025-12-02 23:36:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 23:36:33] c-208-39.aglt2.org
[2025-12-02 23:36:33] apptainer works
[2025-12-02 23:36:33] Set ATHENA_PROC_NUMBER=8
[2025-12-02 23:36:33] Set ATHENA_CORE_NUMBER=8
[2025-12-02 23:36:33] Starting ATLAS job with PandaID=6895362293
[2025-12-02 23:36:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 12:06:45]  *** The last 200 lines of the pilot log: ***
[2025-12-03 12:06:45] 2025-12-03 17:05:03,526 | INFO     | time since job start (44823s) is within the limit (172800.0s)
[2025-12-03 12:06:45] 2025-12-03 17:05:03,680 | INFO     | monitor loop #2731: job 0:6895362293 is in state 'finished'
[2025-12-03 12:06:45] 2025-12-03 17:05:03,680 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 12:06:45] 2025-12-03 17:05:05,533 | INFO     | time since job start (44825s) is within the limit (172800.0s)
[2025-12-03 12:06:45] 2025-12-03 17:05:06,185 | INFO     | monitor loop #2732: job 0:6895362293 is in state 'finished'
[2025-12-03 12:06:45] 2025-12-03 17:05:06,185 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 12:06:45] 2025-12-03 17:05:07,540 | INFO     | time since job start (44827s) is within the limit (172800.0s)
[2025-12-03 12:06:45] 2025-12-03 17:05:08,690 | INFO     | monitor loop #2733: job 0:6895362293 is in state 'finished'
[2025-12-03 12:06:45] 2025-12-03 17:05:08,690 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 12:06:45] 2025-12-03 17:05:09,547 | INFO     | time since job start (44829s) is within the limit (172800.0s)
[2025-12-03 12:06:45] 2025-12-03 17:05:11,196 | INFO     | monitor loop #2734: job 0:6895362293 is in state 'finished'
[2025-12-03 12:06:45] 2025-12-03 17:05:11,196 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 12:06:45] 2025-12-03 17:05:11,554 | INFO     | time since job start (44831s) is within the limit (172800.0s)
[2025-12-03 12:06:45] 2025-12-03 17:05:13,561 | INFO     | time since job start (44833s) is within the limit (172800.0s)
[2025-12-03 12:06:45] 2025-12-03 17:05:13,701 | INFO     | monitor loop #2735: job 0:6895362293 is in state 'finished'
[2025-12-03 12:06:45] 2025-12-03 17:05:13,701 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 12:06:45] 2025-12-03 17:05:13,852 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-03 12:06:45] 2025-12-03 17:05:13,874 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3793.9910078124976
[2025-12-03 12:06:45] 2025-12-03 17:05:13,929 | INFO     | using path: /tmp/boinchome/slots/9/PanDA_Pilot-6895362293/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 12:06:45] 2025-12-03 17:05:13,930 | INFO     | extracted standard info from prmon json
[2025-12-03 12:06:45] 2025-12-03 17:05:13,930 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 12:06:45] 2025-12-03 17:05:13,930 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 12:06:45] 2025-12-03 17:05:13,963 | INFO     | fitting pss+swap vs Time
[2025-12-03 12:06:45] 2025-12-03 17:05:13,964 | INFO     | sum of square deviations: 121612197422.70377
[2025-12-03 12:06:45] 2025-12-03 17:05:14,001 | INFO     | sum of deviations: 1498036651975.8467
[2025-12-03 12:06:45] 2025-12-03 17:05:14,001 | INFO     | mean x: 1764759144.7773223
[2025-12-03 12:06:45] 2025-12-03 17:05:14,002 | INFO     | mean y: 2741016.545081967
[2025-12-03 12:06:45] 2025-12-03 17:05:14,002 | INFO     | intersect: -21735817588.699158
[2025-12-03 12:06:45] 2025-12-03 17:05:14,002 | INFO     | chi2: 36.00331892432577
[2025-12-03 12:06:45] 2025-12-03 17:05:14,003 | INFO     | sum of square deviations: 119137440816.59364
[2025-12-03 12:06:45] 2025-12-03 17:05:14,036 | INFO     | sum of deviations: 1720666873070.7405
[2025-12-03 12:06:45] 2025-12-03 17:05:14,036 | INFO     | mean x: 1764758992.292985
[2025-12-03 12:06:45] 2025-12-03 17:05:14,036 | INFO     | mean y: 2754734.18431912
[2025-12-03 12:06:45] 2025-12-03 17:05:14,036 | INFO     | intersect: -25485138208.445557
[2025-12-03 12:06:45] 2025-12-03 17:05:14,036 | INFO     | chi2: 32.93062288493887
[2025-12-03 12:06:45] 2025-12-03 17:05:14,043 | INFO     | current chi2=32.93062288493887 (change=8.534479962375968 %)
[2025-12-03 12:06:45] 2025-12-03 17:05:14,043 | INFO     | right removable region: 726
[2025-12-03 12:06:45] 2025-12-03 17:05:14,043 | INFO     | sum of square deviations: 119136423946.5936
[2025-12-03 12:06:45] 2025-12-03 17:05:14,061 | INFO     | sum of deviations: 1195878999165.2842
[2025-12-03 12:06:45] 2025-12-03 17:05:14,062 | INFO     | mean x: 1764759297.292985
[2025-12-03 12:06:45] 2025-12-03 17:05:14,062 | INFO     | mean y: 2759629.7028885833
[2025-12-03 12:06:45] 2025-12-03 17:05:14,062 | INFO     | intersect: -17711710154.62127
[2025-12-03 12:06:45] 2025-12-03 17:05:14,062 | INFO     | chi2: 30.66892052836942
[2025-12-03 12:06:45] 2025-12-03 17:05:14,062 | INFO     | current chi2=30.66892052836942 (change=14.816407362800499 %)
[2025-12-03 12:06:45] 2025-12-03 17:05:14,062 | INFO     | left removable region: 10
[2025-12-03 12:06:45] 2025-12-03 17:05:14,085 | INFO     | sum of square deviations: 113809642441.8699
[2025-12-03 12:06:45] 2025-12-03 17:05:14,097 | INFO     | sum of deviations: 1187975700272.7705
[2025-12-03 12:06:45] 2025-12-03 17:05:14,097 | INFO     | mean x: 1764759266.8282123
[2025-12-03 12:06:45] 2025-12-03 17:05:14,097 | INFO     | mean y: 2794700.437150838
[2025-12-03 12:06:45] 2025-12-03 17:05:14,097 | INFO     | intersect: -18418237831.089542
[2025-12-03 12:06:45] 2025-12-03 17:05:14,098 | INFO     | chi2: 22.24631014585592
[2025-12-03 12:06:45] 2025-12-03 17:05:14,098 | INFO     | current memory leak: 10.44 B/s (using 716 data points, chi2=22.25)
[2025-12-03 12:06:45] 2025-12-03 17:05:14,098 | INFO     | could have reported an average CPU frequency of 3765 MHz (28 samples)
[2025-12-03 12:06:45] 2025-12-03 17:05:14,099 | INFO     | ..............................
[2025-12-03 12:06:45] 2025-12-03 17:05:14,099 | INFO     | . Timing measurements:
[2025-12-03 12:06:45] 2025-12-03 17:05:14,099 | INFO     | . get job = 0 s
[2025-12-03 12:06:45] 2025-12-03 17:05:14,099 | INFO     | . initial setup = 7 s
[2025-12-03 12:06:45] 2025-12-03 17:05:14,099 | INFO     | . payload setup = 52 s
[2025-12-03 12:06:45] 2025-12-03 17:05:14,099 | INFO     | . stage-in = 0 s
[2025-12-03 12:06:45] 2025-12-03 17:05:14,099 | INFO     | . payload execution = 44665 s
[2025-12-03 12:06:45] 2025-12-03 17:05:14,099 | INFO     | . stage-out = 7 s
[2025-12-03 12:06:45] 2025-12-03 17:05:14,099 | INFO     | . log creation = 1 s
[2025-12-03 12:06:45] 2025-12-03 17:05:14,099 | INFO     | ..............................
[2025-12-03 12:06:45] 2025-12-03 17:05:14,320 | INFO     | 
[2025-12-03 12:06:45] 2025-12-03 17:05:14,320 | INFO     | job summary report
[2025-12-03 12:06:45] 2025-12-03 17:05:14,320 | INFO     | --------------------------------------------------
[2025-12-03 12:06:45] 2025-12-03 17:05:14,320 | INFO     | PanDA job id: 6895362293
[2025-12-03 12:06:45] 2025-12-03 17:05:14,320 | INFO     | task id: 47556137
[2025-12-03 12:06:45] 2025-12-03 17:05:14,320 | INFO     | errors: (none)
[2025-12-03 12:06:45] 2025-12-03 17:05:14,320 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 12:06:45] 2025-12-03 17:05:14,320 | INFO     | pilot state: finished 
[2025-12-03 12:06:45] 2025-12-03 17:05:14,320 | INFO     | transexitcode: 0
[2025-12-03 12:06:45] 2025-12-03 17:05:14,320 | INFO     | exeerrorcode: 0
[2025-12-03 12:06:45] 2025-12-03 17:05:14,320 | INFO     | exeerrordiag: 
[2025-12-03 12:06:45] 2025-12-03 17:05:14,320 | INFO     | exitcode: 0
[2025-12-03 12:06:45] 2025-12-03 17:05:14,320 | INFO     | exitmsg: OK
[2025-12-03 12:06:45] 2025-12-03 17:05:14,320 | INFO     | cpuconsumptiontime: 139432 s
[2025-12-03 12:06:45] 2025-12-03 17:05:14,320 | INFO     | nevents: 1000
[2025-12-03 12:06:45] 2025-12-03 17:05:14,320 | INFO     | neventsw: 0
[2025-12-03 12:06:45] 2025-12-03 17:05:14,320 | INFO     | pid: 3626855
[2025-12-03 12:06:45] 2025-12-03 17:05:14,320 | INFO     | pgrp: 3626855
[2025-12-03 12:06:45] 2025-12-03 17:05:14,320 | INFO     | corecount: 8
[2025-12-03 12:06:45] 2025-12-03 17:05:14,320 | INFO     | event service: False
[2025-12-03 12:06:45] 2025-12-03 17:05:14,320 | INFO     | sizes: {0: 2283487, 1: 2284172, 2: 2284371, 13: 2284371, 24: 2284427, 35: 2284455, 44: 2284873, 46: 2284901, 44722: 2330665, 44723: 2330664, 44731: 2339742, 44732:
[2025-12-03 12:06:45] 2025-12-03 17:05:14,320 | INFO     | --------------------------------------------------
[2025-12-03 12:06:45] 2025-12-03 17:05:14,321 | INFO     | 
[2025-12-03 12:06:45] 2025-12-03 17:05:14,321 | INFO     | executing command: ls -lF /tmp/boinchome/slots/9
[2025-12-03 12:06:45] 2025-12-03 17:05:14,436 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 12:06:45] 2025-12-03 17:05:14,436 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 12:06:45] 2025-12-03 17:05:14,436 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 12:06:45] 2025-12-03 17:05:14,436 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 12:06:45] 2025-12-03 17:05:14,436 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 12:06:45] 2025-12-03 17:05:14,436 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 12:06:45] 2025-12-03 17:05:14,436 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 12:06:45] 2025-12-03 17:05:14,436 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 12:06:45] 2025-12-03 17:05:14,436 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 12:06:45] 2025-12-03 17:05:14,436 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 12:06:45] 2025-12-03 17:05:14,436 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 12:06:45] 2025-12-03 17:05:14,436 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 12:06:45] 2025-12-03 17:05:14,436 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 12:06:45] 2025-12-03 17:05:14,437 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 12:06:45] 2025-12-03 17:05:14,437 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 12:06:45] 2025-12-03 17:05:14,437 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 12:06:45] 2025-12-03 17:05:14,437 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 12:06:45] 2025-12-03 17:05:14,437 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 12:06:45] 2025-12-03 17:05:14,437 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 12:06:45] 2025-12-03 17:05:14,437 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 12:06:45] 2025-12-03 17:05:14,437 | INFO     | job 6895362293 has completed (purged errors)
[2025-12-03 12:06:45] 2025-12-03 17:05:14,437 | INFO     | overall cleanup function is called
[2025-12-03 12:06:45] 2025-12-03 17:05:15,479 | INFO     | --- collectZombieJob: --- 10, [3626855]
[2025-12-03 12:06:45] 2025-12-03 17:05:15,479 | INFO     | zombie collector waiting for pid 3626855
[2025-12-03 12:06:45] 2025-12-03 17:05:15,479 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 12:06:45] 2025-12-03 17:05:15,479 | INFO     | collected zombie processes
[2025-12-03 12:06:45] 2025-12-03 17:05:15,479 | INFO     | will attempt to kill all subprocesses of pid=3626855
[2025-12-03 12:06:45] 2025-12-03 17:05:16,864 | INFO     | process IDs to be killed: [3626855] (in reverse order)
[2025-12-03 12:06:45] 2025-12-03 17:05:17,460 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 12:06:45] 2025-12-03 17:05:17,460 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 12:06:45] 2025-12-03 17:05:17,508 | INFO     | did not find any defunct processes belonging to 3626855
[2025-12-03 12:06:45] 2025-12-03 17:05:17,551 | INFO     | did not find any defunct processes belonging to 3626855
[2025-12-03 12:06:45] 2025-12-03 17:05:17,556 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 12:06:45] 2025-12-03 17:05:17,556 | INFO     | ready for new job
[2025-12-03 12:06:45] 2025-12-03 17:05:17,556 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 12:06:45] 2025-12-03 17:05:17,558 | INFO     | ***************************************
[2025-12-03 12:06:45] 2025-12-03 17:05:17,559 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 12:06:45] 2025-12-03 17:05:17,559 | INFO     | ***************************************
[2025-12-03 12:06:45] 2025-12-03 17:05:17,559 | INFO     | 
[2025-12-03 12:06:45] 2025-12-03 17:05:17,567 | INFO     | architecture information:
[2025-12-03 12:06:45] 2025-12-03 17:05:17,575 | INFO     | executing command: cat /etc/os-release
[2025-12-03 12:06:45] 2025-12-03 17:05:17,619 | INFO     | cat /etc/os-release:
[2025-12-03 12:06:45] NAME="CentOS Linux"
[2025-12-03 12:06:45] VERSION="7 (Core)"
[2025-12-03 12:06:45] ID="centos"
[2025-12-03 12:06:45] ID_LIKE="rhel fedora"
[2025-12-03 12:06:45] VERSION_ID="7"
[2025-12-03 12:06:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 12:06:45] ANSI_COLOR="0;31"
[2025-12-03 12:06:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 12:06:45] HOME_URL="https://www.centos.org/"
[2025-12-03 12:06:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 12:06:45] 
[2025-12-03 12:06:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 12:06:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 12:06:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 12:06:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 12:06:45] 
[2025-12-03 12:06:45] 2025-12-03 17:05:17,619 | INFO     | ***************************************
[2025-12-03 12:06:45] 2025-12-03 17:05:18,127 | INFO     | executing command: df -mP /tmp/boinchome/slots/9
[2025-12-03 12:06:45] 2025-12-03 17:05:18,181 | INFO     | sufficient remaining disk space (168933982208 B)
[2025-12-03 12:06:45] 2025-12-03 17:05:18,181 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 12:06:45] 2025-12-03 17:05:18,181 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 12:06:45] 2025-12-03 17:05:18,181 | INFO     | update_server=False
[2025-12-03 12:06:45] 2025-12-03 17:05:18,181 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 12:06:45] 2025-12-03 17:05:18,182 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 12:06:45] 2025-12-03 17:05:18,182 | INFO     | aborting loop
[2025-12-03 12:06:45] 2025-12-03 17:05:18,186 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 12:06:45] 2025-12-03 17:05:19,049 | INFO     | all data control threads have been joined
[2025-12-03 12:06:45] 2025-12-03 17:05:19,156 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 12:06:45] 2025-12-03 17:05:19,187 | INFO     | [job] retrieve thread has finished
[2025-12-03 12:06:45] 2025-12-03 17:05:19,188 | INFO     | [job] job monitor thread has finished
[2025-12-03 12:06:45] 2025-12-03 17:05:19,328 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 12:06:45] 2025-12-03 17:05:19,359 | INFO     | [payload] failed_post thread has finished
[2025-12-03 12:06:45] 2025-12-03 17:05:19,382 | INFO     | all job control threads have been joined
[2025-12-03 12:06:45] 2025-12-03 17:05:19,391 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 12:06:45] 2025-12-03 17:05:19,515 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 12:06:45] 2025-12-03 17:05:19,647 | INFO     | all payload control threads have been joined
[2025-12-03 12:06:45] 2025-12-03 17:05:19,799 | INFO     | [job] validate thread has finished
[2025-12-03 12:06:45] 2025-12-03 17:05:19,799 | INFO     | [data] copytool_in thread has finished
[2025-12-03 12:06:45] 2025-12-03 17:05:19,867 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 12:06:45] 2025-12-03 17:05:20,055 | INFO     | [data] control thread has finished
[2025-12-03 12:06:45] 2025-12-03 17:05:20,069 | INFO     | [payload] validate_post thread has finished
[2025-12-03 12:06:45] 2025-12-03 17:05:20,193 | INFO     | [data] copytool_out thread has finished
[2025-12-03 12:06:45] 2025-12-03 17:05:20,334 | INFO     | [job] queue monitor thread has finished
[2025-12-03 12:06:45] 2025-12-03 17:05:20,388 | INFO     | [job] control thread has finished
[2025-12-03 12:06:45] 2025-12-03 17:05:20,624 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 12:06:45] 2025-12-03 17:05:20,657 | INFO     | [payload] control thread has finished
[2025-12-03 12:06:45] 2025-12-03 17:05:23,169 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 12:06:45] 2025-12-03 17:05:45,684 | INFO     | 44842s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-12-03 12:06:45] 2025-12-03 17:05:47,590 | INFO     | PID=3599663 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-03 12:06:45] 2025-12-03 17:05:47,590 | INFO     | .. there are 33 such processes running
[2025-12-03 12:06:45] 2025-12-03 17:05:47,591 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 12:06:45] 2025-12-03 17:05:47,591 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 12:06:45] 2025-12-03 17:05:47,591 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 12:06:45] 2025-12-03 17:06:17,757 | INFO     | [monitor] cgroup control has ended
[2025-12-03 12:06:45] 2025-12-03 17:06:18,240 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140238629136192)>', '<ExcThread(monitor, started 140237846075136)>']
[2025-12-03 12:06:45] 2025-12-03 17:06:18,775 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 12:06:45] 2025-12-03 17:06:18,775 | INFO     | [monitor] control thread has ended
[2025-12-03 12:06:45] 2025-12-03 17:06:23,266 | INFO     | all workflow threads have been joined
[2025-12-03 12:06:45] 2025-12-03 17:06:23,266 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 12:06:45] 2025-12-03 17:06:23,266 | INFO     | traces error code: 0
[2025-12-03 12:06:45] 2025-12-03 17:06:23,266 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 12:06:45] 2025-12-03 17:06:23,581 [wrapper] ==== pilot stdout END ====
[2025-12-03 12:06:45] 2025-12-03 17:06:23,595 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 12:06:45] 2025-12-03 17:06:23,601 [wrapper] pilotpid: 3599663
[2025-12-03 12:06:45] 2025-12-03 17:06:23,624 [wrapper] Pilot exit status: 0
[2025-12-03 12:06:45] 2025-12-03 17:06:23,784 [wrapper] pandaids: 6895362293 6895362293
[2025-12-03 12:06:45] 2025-12-03 17:06:24,074 [wrapper] cleanup supervisor_pilot 2263102 3599664
[2025-12-03 12:06:45] 2025-12-03 17:06:24,092 [wrapper] Test setup, not cleaning
[2025-12-03 12:06:45] 2025-12-03 17:06:24,102 [wrapper] apfmon messages muted
[2025-12-03 12:06:45] 2025-12-03 17:06:24,132 [wrapper] ==== wrapper stdout END ====
[2025-12-03 12:06:45] 2025-12-03 17:06:24,152 [wrapper] ==== wrapper stderr END ====
[2025-12-03 12:06:45]  *** Error codes and diagnostics ***
[2025-12-03 12:06:45]     "exeErrorCode": 0,
[2025-12-03 12:06:45]     "exeErrorDiag": "",
[2025-12-03 12:06:45]     "pilotErrorCode": 0,
[2025-12-03 12:06:45]     "pilotErrorDiag": "",
[2025-12-03 12:06:45]  *** Listing of results directory ***
[2025-12-03 12:06:45] total 1725156
[2025-12-03 12:06:45] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-12-03 12:06:45] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 09:56 pilot3.tar.gz
[2025-12-03 12:06:45] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 10:00 queuedata.json
[2025-12-03 12:06:45] -rwx------. 1 boincer umatlas     36292 Nov 23 10:02 runpilot2-wrapper.sh
[2025-12-03 12:06:45] -rw-r--r--. 1 boincer umatlas       100 Dec  2 18:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 12:06:45] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  2 18:30 run_atlas
[2025-12-03 12:06:45] -rw-r--r--. 1 boincer umatlas       105 Dec  2 18:30 job.xml
[2025-12-03 12:06:45] -rw-r--r--. 3 boincer umatlas 411177596 Dec  2 18:31 EVNT.47483658._000781.pool.root.1
[2025-12-03 12:06:45] -rw-r--r--. 3 boincer umatlas 411177596 Dec  2 18:31 ATLAS.root_0
[2025-12-03 12:06:45] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 18:31 start_atlas.sh
[2025-12-03 12:06:45] drwxrwx--x. 2 boincer umatlas      4096 Dec  2 18:31 shared
[2025-12-03 12:06:45] -rw-r--r--. 2 boincer umatlas    590100 Dec  2 18:31 input.tar.gz
[2025-12-03 12:06:45] -rw-r--r--. 1 boincer umatlas         0 Dec  2 18:31 boinc_lockfile
[2025-12-03 12:06:45] -rw-r--r--. 1 boincer umatlas      2786 Dec  2 23:36 pandaJob.out
[2025-12-03 12:06:45] -rw-------. 1 boincer umatlas        57 Dec  2 23:36 setup.sh.local
[2025-12-03 12:06:45] -rw-------. 1 boincer umatlas    989297 Dec  2 23:37 agis_schedconf.cvmfs.json
[2025-12-03 12:06:45] -rw-r--r--. 1 boincer umatlas       533 Dec  3 11:40 boinc_task_state.xml
[2025-12-03 12:06:45] -rw-r--r--. 1 boincer umatlas      7176 Dec  3 12:01 init_data.xml
[2025-12-03 12:06:45] -rw-------. 1 boincer umatlas 924894198 Dec  3 12:04 HITS.47556137._007692.pool.root.1
[2025-12-03 12:06:45] -rw-------. 1 boincer umatlas      1071 Dec  3 12:04 memory_monitor_summary.json
[2025-12-03 12:06:45] -rw-------. 1 boincer umatlas   1516240 Dec  3 12:04 agis_ddmendpoints.agis.ALL.json
[2025-12-03 12:06:45] -rw-------. 1 boincer umatlas   1945088 Dec  3 12:04 log.47556137._007692.job.log.tgz.1
[2025-12-03 12:06:45] -rw-------. 1 boincer umatlas      8634 Dec  3 12:05 heartbeat.json
[2025-12-03 12:06:45] -rw-------. 1 boincer umatlas        97 Dec  3 12:05 pilot_heartbeat.json
[2025-12-03 12:06:45] -rw-------. 1 boincer umatlas      4941 Dec  3 12:06 pilotlog.txt
[2025-12-03 12:06:45] -rw-------. 1 boincer umatlas   5745614 Dec  3 12:06 log.47556137._007692.job.log.1
[2025-12-03 12:06:45] -rw-------. 1 boincer umatlas       353 Dec  3 12:06 output.list
[2025-12-03 12:06:45] -rw-r--r--. 1 boincer umatlas       620 Dec  3 12:06 runtime_log
[2025-12-03 12:06:45] -rw-------. 1 boincer umatlas   7710720 Dec  3 12:06 result.tar.gz
[2025-12-03 12:06:45] -rw-r--r--. 1 boincer umatlas      9428 Dec  3 12:06 runtime_log.err
[2025-12-03 12:06:45] -rw-------. 1 boincer umatlas       790 Dec  3 12:06 QWPKDmhmQh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmyaIKDmYa2jOo.diag
[2025-12-03 12:06:45] -rw-r--r--. 1 boincer umatlas        29 Dec  3 12:06 wrapper_checkpoint.txt
[2025-12-03 12:06:45] -rw-r--r--. 1 boincer umatlas      8192 Dec  3 12:06 boinc_mmap_file
[2025-12-03 12:06:45] -rw-r--r--. 1 boincer umatlas     24118 Dec  3 12:06 stderr.txt
[2025-12-03 12:06:45] HITS file was successfully produced:
[2025-12-03 12:06:45] -rw-------. 1 boincer umatlas 924894198 Dec  3 12:04 shared/HITS.pool.root.1
[2025-12-03 12:06:45]  *** Contents of shared directory: ***
[2025-12-03 12:06:45] total 1312900
[2025-12-03 12:06:45] -rw-r--r--. 3 boincer umatlas 411177596 Dec  2 18:31 ATLAS.root_0
[2025-12-03 12:06:45] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 18:31 start_atlas.sh
[2025-12-03 12:06:45] -rw-r--r--. 2 boincer umatlas    590100 Dec  2 18:31 input.tar.gz
[2025-12-03 12:06:45] -rw-------. 1 boincer umatlas 924894198 Dec  3 12:04 HITS.pool.root.1
[2025-12-03 12:06:45] -rw-------. 1 boincer umatlas   7710720 Dec  3 12:06 result.tar.gz
12:06:47 (3584632): run_atlas exited; CPU time 140056.520648
12:06:47 (3584632): called boinc_finish(0)

</stderr_txt>
]]>

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