Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
00:38:39 (24658): wrapper (7.7.26015): starting
00:38:39 (24658): wrapper: running run_atlas (--nthreads 8)
[2025-12-03 00:38:39] Arguments: --nthreads 8
[2025-12-03 00:38:39] Threads: 8
[2025-12-03 00:38:39] Checking for CVMFS
[2025-12-03 00:38:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 00:38:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 00:38:40] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 00:38:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 00:38:40] 2.11.0.0 4268 74806 97868 153574 3 188 2393647 4096001 2751 130560 1 14449963 99.689 7910141 694 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-03 00:38:40] CVMFS is ok
[2025-12-03 00:38:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-03 00:38:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-03 00:38:40] Further information can be found at the LHC@home message board.
[2025-12-03 00:38:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 00:38:40] Checking for apptainer binary...
[2025-12-03 00:38:40] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-03 00:38:40] apptainer is not installed, using version from CVMFS
[2025-12-03 00:38:40] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 00:38:40] WARNING: Environment variable TMPDIR already has value [/tmp/job_10946088/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node267
[2025-12-03 00:38:40] apptainer works
[2025-12-03 00:38:40] Set ATHENA_PROC_NUMBER=8
[2025-12-03 00:38:40] Set ATHENA_CORE_NUMBER=8
[2025-12-03 00:38:40] Starting ATLAS job with PandaID=6904402532
[2025-12-03 00:38:40] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10946088/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 02:46:15]  *** The last 200 lines of the pilot log: ***
[2025-12-03 02:46:15] 2025-12-03 01:45:42,123 | INFO     | time since job start (7617s) is within the limit (172800.0s)
[2025-12-03 02:46:15] 2025-12-03 01:45:43,835 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 02:46:15] 2025-12-03 01:45:43,839 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2614.706015625
[2025-12-03 02:46:15] 2025-12-03 01:45:43,845 | INFO     | using path: /tmp/job_10946088/atlas/pilot/slots/0/PanDA_Pilot-6904402532/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 02:46:15] 2025-12-03 01:45:43,845 | INFO     | extracted standard info from prmon json
[2025-12-03 02:46:15] 2025-12-03 01:45:43,845 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 02:46:15] 2025-12-03 01:45:43,845 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 02:46:15] 2025-12-03 01:45:43,845 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-03 02:46:15] 2025-12-03 01:45:43,845 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-03 02:46:15] 2025-12-03 01:45:43,847 | INFO     | fitting pss+swap vs Time
[2025-12-03 02:46:15] 2025-12-03 01:45:43,847 | INFO     | sum of square deviations: 605592750.0
[2025-12-03 02:46:15] 2025-12-03 01:45:43,847 | INFO     | sum of deviations: 14380977346.999996
[2025-12-03 02:46:15] 2025-12-03 01:45:43,847 | INFO     | mean x: 1764722524.0
[2025-12-03 02:46:15] 2025-12-03 01:45:43,847 | INFO     | mean y: 2590996.752
[2025-12-03 02:46:15] 2025-12-03 01:45:43,847 | INFO     | intersect: -41904176614.62488
[2025-12-03 02:46:15] 2025-12-03 01:45:43,847 | INFO     | chi2: 1.169520645389809
[2025-12-03 02:46:15] 2025-12-03 01:45:43,847 | INFO     | sum of square deviations: 535786790.0
[2025-12-03 02:46:15] 2025-12-03 01:45:43,848 | INFO     | sum of deviations: 13840083514.999998
[2025-12-03 02:46:15] 2025-12-03 01:45:43,848 | INFO     | mean x: 1764722371.5
[2025-12-03 02:46:15] 2025-12-03 01:45:43,848 | INFO     | mean y: 2589816.1
[2025-12-03 02:46:15] 2025-12-03 01:45:43,848 | INFO     | intersect: -45582529970.72575
[2025-12-03 02:46:15] 2025-12-03 01:45:43,848 | INFO     | chi2: 1.1708163868267916
[2025-12-03 02:46:15] 2025-12-03 01:45:43,848 | INFO     | current chi2=1.1708163868267916 (change=-0.11079252359419815 %)
[2025-12-03 02:46:15] 2025-12-03 01:45:43,848 | INFO     | right removable region: 119
[2025-12-03 02:46:15] 2025-12-03 01:45:43,848 | INFO     | sum of square deviations: 535786790.0
[2025-12-03 02:46:15] 2025-12-03 01:45:43,848 | INFO     | sum of deviations: -1322347721.5000002
[2025-12-03 02:46:15] 2025-12-03 01:45:43,849 | INFO     | mean x: 1764722676.5
[2025-12-03 02:46:15] 2025-12-03 01:45:43,849 | INFO     | mean y: 2624595.2083333335
[2025-12-03 02:46:15] 2025-12-03 01:45:43,849 | INFO     | intersect: 4358045546.048044
[2025-12-03 02:46:15] 2025-12-03 01:45:43,849 | INFO     | chi2: 0.013812576761469502
[2025-12-03 02:46:15] 2025-12-03 01:45:43,849 | INFO     | current chi2=0.013812576761469502 (change=98.81895400342714 %)
[2025-12-03 02:46:15] 2025-12-03 01:45:43,849 | INFO     | sum of square deviations: 471562330.0
[2025-12-03 02:46:15] 2025-12-03 01:45:43,849 | INFO     | sum of deviations: -1542944370.000001
[2025-12-03 02:46:15] 2025-12-03 01:45:43,849 | INFO     | mean x: 1764722829.0
[2025-12-03 02:46:15] 2025-12-03 01:45:43,849 | INFO     | mean y: 2625091.9739130433
[2025-12-03 02:46:15] 2025-12-03 01:45:43,849 | INFO     | intersect: 5776769845.258224
[2025-12-03 02:46:15] 2025-12-03 01:45:43,849 | INFO     | chi2: 0.012878453843308725
[2025-12-03 02:46:15] 2025-12-03 01:45:43,849 | INFO     | current chi2=0.012878453843308725 (change=6.762843271695217 %)
[2025-12-03 02:46:15] 2025-12-03 01:45:43,849 | INFO     | left removable region: 20
[2025-12-03 02:46:15] 2025-12-03 01:45:43,850 | INFO     | sum of square deviations: 300842850.0
[2025-12-03 02:46:15] 2025-12-03 01:45:43,850 | INFO     | sum of deviations: -243710311.00000018
[2025-12-03 02:46:15] 2025-12-03 01:45:43,850 | INFO     | mean x: 1764722951.0
[2025-12-03 02:46:15] 2025-12-03 01:45:43,850 | INFO     | mean y: 2621836.0606060605
[2025-12-03 02:46:15] 2025-12-03 01:45:43,850 | INFO     | intersect: 1432209340.689844
[2025-12-03 02:46:15] 2025-12-03 01:45:43,850 | INFO     | chi2: 0.011579974619400015
[2025-12-03 02:46:15] 2025-12-03 01:45:43,850 | INFO     | current memory leak: -0.81 B/s (using 99 data points, chi2=0.01)
[2025-12-03 02:46:15] 2025-12-03 01:45:43,850 | INFO     | could have reported an average CPU frequency of 2724 MHz (8 samples)
[2025-12-03 02:46:15] 2025-12-03 01:45:43,850 | INFO     | ..............................
[2025-12-03 02:46:15] 2025-12-03 01:45:43,850 | INFO     | . Timing measurements:
[2025-12-03 02:46:15] 2025-12-03 01:45:43,850 | INFO     | . get job = 0 s
[2025-12-03 02:46:15] 2025-12-03 01:45:43,850 | INFO     | . initial setup = 1 s
[2025-12-03 02:46:15] 2025-12-03 01:45:43,850 | INFO     | . payload setup = 2 s
[2025-12-03 02:46:15] 2025-12-03 01:45:43,850 | INFO     | . stage-in = 0 s
[2025-12-03 02:46:15] 2025-12-03 01:45:43,851 | INFO     | . payload execution = 7597 s
[2025-12-03 02:46:15] 2025-12-03 01:45:43,851 | INFO     | . stage-out = 0 s
[2025-12-03 02:46:15] 2025-12-03 01:45:43,851 | INFO     | . log creation = 0 s
[2025-12-03 02:46:15] 2025-12-03 01:45:43,851 | INFO     | ..............................
[2025-12-03 02:46:15] 2025-12-03 01:45:43,900 | INFO     | 
[2025-12-03 02:46:15] 2025-12-03 01:45:43,900 | INFO     | job summary report
[2025-12-03 02:46:15] 2025-12-03 01:45:43,900 | INFO     | --------------------------------------------------
[2025-12-03 02:46:15] 2025-12-03 01:45:43,900 | INFO     | PanDA job id: 6904402532
[2025-12-03 02:46:15] 2025-12-03 01:45:43,900 | INFO     | task id: 47523667
[2025-12-03 02:46:15] 2025-12-03 01:45:43,900 | INFO     | errors: (none)
[2025-12-03 02:46:15] 2025-12-03 01:45:43,900 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 02:46:15] 2025-12-03 01:45:43,900 | INFO     | pilot state: finished 
[2025-12-03 02:46:15] 2025-12-03 01:45:43,900 | INFO     | transexitcode: 0
[2025-12-03 02:46:15] 2025-12-03 01:45:43,900 | INFO     | exeerrorcode: 0
[2025-12-03 02:46:15] 2025-12-03 01:45:43,900 | INFO     | exeerrordiag: 
[2025-12-03 02:46:15] 2025-12-03 01:45:43,900 | INFO     | exitcode: 0
[2025-12-03 02:46:15] 2025-12-03 01:45:43,901 | INFO     | exitmsg: OK
[2025-12-03 02:46:15] 2025-12-03 01:45:43,901 | INFO     | cpuconsumptiontime: 53704 s
[2025-12-03 02:46:15] 2025-12-03 01:45:43,901 | INFO     | nevents: 400
[2025-12-03 02:46:15] 2025-12-03 01:45:43,901 | INFO     | neventsw: 0
[2025-12-03 02:46:15] 2025-12-03 01:45:43,901 | INFO     | pid: 5418
[2025-12-03 02:46:15] 2025-12-03 01:45:43,901 | INFO     | pgrp: 5418
[2025-12-03 02:46:15] 2025-12-03 01:45:43,901 | INFO     | corecount: 8
[2025-12-03 02:46:15] 2025-12-03 01:45:43,901 | INFO     | event service: False
[2025-12-03 02:46:15] 2025-12-03 01:45:43,901 | INFO     | sizes: {0: 2284030, 2: 2284292, 10: 2284320, 7603: 2312090, 7604: 2321174, 7606: 2321312}
[2025-12-03 02:46:15] 2025-12-03 01:45:43,901 | INFO     | --------------------------------------------------
[2025-12-03 02:46:15] 2025-12-03 01:45:43,901 | INFO     | 
[2025-12-03 02:46:15] 2025-12-03 01:45:43,901 | INFO     | executing command: ls -lF /tmp/job_10946088/atlas/pilot/slots/0
[2025-12-03 02:46:15] 2025-12-03 01:45:43,910 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 02:46:15] 2025-12-03 01:45:43,910 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 02:46:15] 2025-12-03 01:45:43,910 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 02:46:15] 2025-12-03 01:45:43,910 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 02:46:15] 2025-12-03 01:45:43,910 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 02:46:15] 2025-12-03 01:45:43,910 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 02:46:15] 2025-12-03 01:45:43,910 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 02:46:15] 2025-12-03 01:45:43,910 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 02:46:15] 2025-12-03 01:45:43,910 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 02:46:15] 2025-12-03 01:45:43,910 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 02:46:15] 2025-12-03 01:45:43,910 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 02:46:15] 2025-12-03 01:45:43,910 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 02:46:15] 2025-12-03 01:45:43,910 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 02:46:15] 2025-12-03 01:45:43,910 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 02:46:15] 2025-12-03 01:45:43,911 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 02:46:15] 2025-12-03 01:45:43,911 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 02:46:15] 2025-12-03 01:45:43,911 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 02:46:15] 2025-12-03 01:45:43,911 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 02:46:15] 2025-12-03 01:45:43,911 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 02:46:15] 2025-12-03 01:45:43,911 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 02:46:15] 2025-12-03 01:45:43,911 | INFO     | job 6904402532 has completed (purged errors)
[2025-12-03 02:46:15] 2025-12-03 01:45:43,911 | INFO     | overall cleanup function is called
[2025-12-03 02:46:15] 2025-12-03 01:45:44,870 | WARNING  | process 5418 can no longer be monitored (due to stat problems) - aborting
[2025-12-03 02:46:15] 2025-12-03 01:45:44,917 | INFO     | --- collectZombieJob: --- 10, [5418]
[2025-12-03 02:46:15] 2025-12-03 01:45:44,917 | INFO     | zombie collector waiting for pid 5418
[2025-12-03 02:46:15] 2025-12-03 01:45:44,917 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 02:46:15] 2025-12-03 01:45:44,917 | INFO     | collected zombie processes
[2025-12-03 02:46:15] 2025-12-03 01:45:44,917 | INFO     | will attempt to kill all subprocesses of pid=5418
[2025-12-03 02:46:15] 2025-12-03 01:45:45,030 | INFO     | using path: /tmp/job_10946088/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 02:46:15] 2025-12-03 01:45:45,234 | INFO     | process IDs to be killed: [5418] (in reverse order)
[2025-12-03 02:46:15] 2025-12-03 01:45:45,265 | INFO     | number of running child processes to parent process 5418: 1
[2025-12-03 02:46:15] 2025-12-03 01:45:45,265 | INFO     | maximum number of monitored processes: 6
[2025-12-03 02:46:15] 2025-12-03 01:45:45,265 | INFO     | aborting job monitoring since job object (job id=6904402532) has expired
[2025-12-03 02:46:15] 2025-12-03 01:45:45,267 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 02:46:15] 2025-12-03 01:45:45,267 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 02:46:15] 2025-12-03 01:45:45,271 | INFO     | did not find any defunct processes belonging to 5418
[2025-12-03 02:46:15] 2025-12-03 01:45:45,274 | INFO     | did not find any defunct processes belonging to 5418
[2025-12-03 02:46:15] 2025-12-03 01:45:45,275 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 02:46:15] 2025-12-03 01:45:45,275 | INFO     | ready for new job
[2025-12-03 02:46:15] 2025-12-03 01:45:45,275 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 02:46:15] 2025-12-03 01:45:45,275 | INFO     | ***************************************
[2025-12-03 02:46:15] 2025-12-03 01:45:45,276 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 02:46:15] 2025-12-03 01:45:45,276 | INFO     | ***************************************
[2025-12-03 02:46:15] 2025-12-03 01:45:45,276 | INFO     | 
[2025-12-03 02:46:15] 2025-12-03 01:45:45,289 | INFO     | architecture information:
[2025-12-03 02:46:15] 2025-12-03 01:45:45,289 | INFO     | executing command: cat /etc/os-release
[2025-12-03 02:46:15] 2025-12-03 01:45:45,295 | INFO     | cat /etc/os-release:
[2025-12-03 02:46:15] NAME="CentOS Linux"
[2025-12-03 02:46:15] VERSION="7 (Core)"
[2025-12-03 02:46:15] ID="centos"
[2025-12-03 02:46:15] ID_LIKE="rhel fedora"
[2025-12-03 02:46:15] VERSION_ID="7"
[2025-12-03 02:46:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 02:46:15] ANSI_COLOR="0;31"
[2025-12-03 02:46:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 02:46:15] HOME_URL="https://www.centos.org/"
[2025-12-03 02:46:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 02:46:15] 
[2025-12-03 02:46:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 02:46:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 02:46:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 02:46:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 02:46:15] 
[2025-12-03 02:46:15] 2025-12-03 01:45:45,295 | INFO     | ***************************************
[2025-12-03 02:46:15] 2025-12-03 01:45:45,798 | INFO     | executing command: df -mP /tmp/job_10946088/atlas/pilot/slots/0
[2025-12-03 02:46:15] 2025-12-03 01:45:45,802 | INFO     | sufficient remaining disk space (224764362752 B)
[2025-12-03 02:46:15] 2025-12-03 01:45:45,802 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 02:46:15] 2025-12-03 01:45:45,803 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 02:46:15] 2025-12-03 01:45:45,803 | INFO     | update_server=False
[2025-12-03 02:46:15] 2025-12-03 01:45:45,803 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 02:46:15] 2025-12-03 01:45:45,803 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 02:46:15] 2025-12-03 01:45:45,803 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 02:46:15] 2025-12-03 01:45:45,803 | INFO     | will abort loop
[2025-12-03 02:46:15] 2025-12-03 01:45:46,509 | INFO     | all payload control threads have been joined
[2025-12-03 02:46:15] 2025-12-03 01:45:46,653 | INFO     | all data control threads have been joined
[2025-12-03 02:46:15] 2025-12-03 01:45:46,808 | INFO     | [job] queue monitor thread has finished
[2025-12-03 02:46:15] 2025-12-03 01:45:46,808 | INFO     | [job] job monitor thread has finished
[2025-12-03 02:46:15] 2025-12-03 01:45:46,808 | INFO     | [job] retrieve thread has finished
[2025-12-03 02:46:15] 2025-12-03 01:45:46,844 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 02:46:15] 2025-12-03 01:45:46,888 | INFO     | all job control threads have been joined
[2025-12-03 02:46:15] 2025-12-03 01:45:47,179 | INFO     | [job] validate thread has finished
[2025-12-03 02:46:15] 2025-12-03 01:45:47,225 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 02:46:15] 2025-12-03 01:45:47,362 | INFO     | [payload] failed_post thread has finished
[2025-12-03 02:46:15] 2025-12-03 01:45:47,424 | INFO     | [data] copytool_in thread has finished
[2025-12-03 02:46:15] 2025-12-03 01:45:47,493 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 02:46:15] 2025-12-03 01:45:47,514 | INFO     | [payload] control thread has finished
[2025-12-03 02:46:15] 2025-12-03 01:45:47,559 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 02:46:15] 2025-12-03 01:45:47,658 | INFO     | [data] control thread has finished
[2025-12-03 02:46:15] 2025-12-03 01:45:47,893 | INFO     | [job] control thread has finished
[2025-12-03 02:46:15] 2025-12-03 01:45:48,001 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 02:46:15] 2025-12-03 01:45:48,237 | INFO     | [payload] validate_post thread has finished
[2025-12-03 02:46:15] 2025-12-03 01:45:48,849 | INFO     | [data] copytool_out thread has finished
[2025-12-03 02:46:15] 2025-12-03 01:45:51,499 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 02:46:15] 2025-12-03 01:45:56,436 | INFO     | [monitor] cgroup control has ended
[2025-12-03 02:46:15] 2025-12-03 01:45:56,572 | INFO     | job.realtimelogging is not enabled
[2025-12-03 02:46:15] 2025-12-03 01:45:57,578 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 02:46:15] 2025-12-03 01:45:59,106 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456062920448)>']
[2025-12-03 02:46:15] 2025-12-03 01:46:04,131 | INFO     | all workflow threads have been joined
[2025-12-03 02:46:15] 2025-12-03 01:46:04,131 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 02:46:15] 2025-12-03 01:46:04,131 | INFO     | traces error code: 0
[2025-12-03 02:46:15] 2025-12-03 01:46:04,132 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 02:46:15] 2025-12-03 01:46:15,315 | INFO     | PID=29348 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-03 02:46:15] 2025-12-03 01:46:15,315 | INFO     | .. there are 3 such processes running
[2025-12-03 02:46:15] 2025-12-03 01:46:15,315 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 02:46:15] 2025-12-03 01:46:15,315 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 02:46:15] 2025-12-03 01:46:15,316 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 02:46:15] 2025-12-03 01:46:15,316 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 02:46:15] 2025-12-03 01:46:15,316 | CRITICAL | thread 'MainThread' is not alive
[2025-12-03 02:46:15] 2025-12-03 01:46:15,316 | INFO     | [monitor] control thread has ended
[2025-12-03 02:46:15] 2025-12-03 01:46:15,372 [wrapper] ==== pilot stdout END ====
[2025-12-03 02:46:15] 2025-12-03 01:46:15,374 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 02:46:15] 2025-12-03 01:46:15,375 [wrapper] pilotpid: 29348
[2025-12-03 02:46:15] 2025-12-03 01:46:15,376 [wrapper] Pilot exit status: 0
[2025-12-03 02:46:15] 2025-12-03 01:46:15,381 [wrapper] pandaids: 6904402532
[2025-12-03 02:46:15] 2025-12-03 01:46:15,403 [wrapper] cleanup supervisor_pilot 12276 29349
[2025-12-03 02:46:15] 2025-12-03 01:46:15,404 [wrapper] Test setup, not cleaning
[2025-12-03 02:46:15] 2025-12-03 01:46:15,405 [wrapper] apfmon messages muted
[2025-12-03 02:46:15] 2025-12-03 01:46:15,407 [wrapper] ==== wrapper stdout END ====
[2025-12-03 02:46:15] 2025-12-03 01:46:15,408 [wrapper] ==== wrapper stderr END ====
[2025-12-03 02:46:15]  *** Error codes and diagnostics ***
[2025-12-03 02:46:15]     "exeErrorCode": 0,
[2025-12-03 02:46:15]     "exeErrorDiag": "",
[2025-12-03 02:46:15]     "pilotErrorCode": 0,
[2025-12-03 02:46:15]     "pilotErrorDiag": "",
[2025-12-03 02:46:15]  *** Listing of results directory ***
[2025-12-03 02:46:15] total 622780
[2025-12-03 02:46:15] -rw------- 1 mf493845 unix-user    576529 Nov 29 10:19 pilot3.tar.gz
[2025-12-03 02:46:15] -rwx------ 1 mf493845 unix-user     36292 Nov 29 10:19 runpilot2-wrapper.sh
[2025-12-03 02:46:15] -rw------- 1 mf493845 unix-user      5112 Nov 29 10:22 queuedata.json
[2025-12-03 02:46:15] -rw------- 1 mf493845 unix-user       100 Dec  2 23:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 02:46:15] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  2 23:23 run_atlas
[2025-12-03 02:46:15] -rw------- 1 mf493845 unix-user       105 Dec  2 23:23 job.xml
[2025-12-03 02:46:15] -rw-r--r-- 2 mf493845 unix-user 295062535 Dec  3 00:38 EVNT.47523665._000003.pool.root.1
[2025-12-03 02:46:15] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 00:38 start_atlas.sh
[2025-12-03 02:46:15] drwxrwx--x 2 mf493845 unix-user       100 Dec  3 00:38 shared
[2025-12-03 02:46:15] -rw-r--r-- 2 mf493845 unix-user    589961 Dec  3 00:38 input.tar.gz
[2025-12-03 02:46:15] -rw------- 1 mf493845 unix-user      6391 Dec  3 00:38 init_data.xml
[2025-12-03 02:46:15] -rw------- 1 mf493845 unix-user         0 Dec  3 00:38 boinc_setup_complete
[2025-12-03 02:46:15] -rw------- 1 mf493845 unix-user      8192 Dec  3 00:38 boinc_mmap_file
[2025-12-03 02:46:15] -rw------- 1 mf493845 unix-user         0 Dec  3 00:38 boinc_lockfile
[2025-12-03 02:46:15] -rw------- 1 mf493845 unix-user      2617 Dec  3 00:38 pandaJob.out
[2025-12-03 02:46:15] -rw------- 1 mf493845 unix-user    989284 Dec  3 00:38 agis_schedconf.cvmfs.json
[2025-12-03 02:46:15] -rw------- 1 mf493845 unix-user   1516240 Dec  3 00:38 agis_ddmendpoints.agis.ALL.json
[2025-12-03 02:46:15] drwx------ 5 mf493845 unix-user       440 Dec  3 00:38 pilot3
[2025-12-03 02:46:15] -rw------- 1 mf493845 unix-user 335814014 Dec  3 02:45 HITS.47523667._000156.pool.root.1
[2025-12-03 02:46:15] -rw------- 1 mf493845 unix-user      1017 Dec  3 02:45 memory_monitor_summary.json
[2025-12-03 02:46:15] -rw------- 1 mf493845 unix-user    369331 Dec  3 02:45 log.47523667._000156.job.log.tgz.1
[2025-12-03 02:46:15] -rw------- 1 mf493845 unix-user      7754 Dec  3 02:45 heartbeat.json
[2025-12-03 02:46:15] -rw------- 1 mf493845 unix-user        95 Dec  3 02:46 pilot_heartbeat.json
[2025-12-03 02:46:15] -rw------- 1 mf493845 unix-user       890 Dec  3 02:46 pilotlog.txt
[2025-12-03 02:46:15] -rw------- 1 mf493845 unix-user   1116751 Dec  3 02:46 log.47523667._000156.job.log.1
[2025-12-03 02:46:15] -rw------- 1 mf493845 unix-user       357 Dec  3 02:46 output.list
[2025-12-03 02:46:15] -rw------- 1 mf493845 unix-user       620 Dec  3 02:46 runtime_log
[2025-12-03 02:46:15] -rw------- 1 mf493845 unix-user   1505280 Dec  3 02:46 result.tar.gz
[2025-12-03 02:46:15] -rw------- 1 mf493845 unix-user      9220 Dec  3 02:46 runtime_log.err
[2025-12-03 02:46:15] -rw------- 1 mf493845 unix-user       645 Dec  3 02:46 MBUNDmaIWj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmzlLKDmYhmhdn.diag
[2025-12-03 02:46:15] -rw------- 1 mf493845 unix-user     21795 Dec  3 02:46 stderr.txt
[2025-12-03 02:46:15] HITS file was successfully produced:
[2025-12-03 02:46:15] -rw------- 1 mf493845 unix-user 335814014 Dec  3 02:45 shared/HITS.pool.root.1
[2025-12-03 02:46:15]  *** Contents of shared directory: ***
[2025-12-03 02:46:15] total 618160
[2025-12-03 02:46:15] -rw-r--r-- 2 mf493845 unix-user 295062535 Dec  3 00:38 ATLAS.root_0
[2025-12-03 02:46:15] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 00:38 start_atlas.sh
[2025-12-03 02:46:15] -rw-r--r-- 2 mf493845 unix-user    589961 Dec  3 00:38 input.tar.gz
[2025-12-03 02:46:15] -rw------- 1 mf493845 unix-user 335814014 Dec  3 02:45 HITS.pool.root.1
[2025-12-03 02:46:15] -rw------- 1 mf493845 unix-user   1505280 Dec  3 02:46 result.tar.gz
02:46:16 (24658): run_atlas exited; CPU time 53808.260029
02:46:16 (24658): called boinc_finish(0)

</stderr_txt>
]]>

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