Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:45:26 (234142): wrapper (7.7.26015): starting
16:45:26 (234142): wrapper: running run_atlas (--nthreads 10)
[2025-12-02 16:45:26] Arguments: --nthreads 10
[2025-12-02 16:45:26] Threads: 10
[2025-12-02 16:45:26] Checking for CVMFS
[2025-12-02 16:45:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 16:45:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 16:45:27] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 16:45:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 16:45:28] 2.13.2.0 1657905 39455 244968 153569 0 661 38871597 40960000 40035 16776704 0 456430059 99.692 362892038 48421 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-02 16:45:28] CVMFS is ok
[2025-12-02 16:45:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 16:45:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 16:45:28] Further information can be found at the LHC@home message board.
[2025-12-02 16:45:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 16:45:28] Checking for apptainer binary...
[2025-12-02 16:45:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 16:45:28] Running /usr/bin/apptainer --version
[2025-12-02 16:45:28] apptainer version 1.4.4-1.el9
[2025-12-02 16:45:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 16:45:28] c-208-39.aglt2.org
[2025-12-02 16:45:28] apptainer works
[2025-12-02 16:45:28] Set ATHENA_PROC_NUMBER=10
[2025-12-02 16:45:28] Set ATHENA_CORE_NUMBER=10
[2025-12-02 16:45:28] Starting ATLAS job with PandaID=6905333404
[2025-12-02 16:45:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
23:00:09 (234142): BOINC client no longer exists - exiting
23:00:09 (234142): timer handler: client dead, exiting
23:11:05 (3253970): wrapper (7.7.26015): starting
23:11:05 (3253970): wrapper: running run_atlas (--nthreads 11)
[2025-12-02 23:11:05] Arguments: --nthreads 11
[2025-12-02 23:11:05] Threads: 11
[2025-12-02 23:11:05] This job has been restarted, cleaning up previous attempt
[2025-12-02 23:11:05] Checking for CVMFS
[2025-12-02 23:11:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 23:11:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 23:11:05] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 23:11:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 23:11:05] 2.13.2.0 1657905 39841 245256 153579 3 546 24319821 40960000 23221 16776704 0 459625125 99.692 364147989 48429 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-02 23:11:05] CVMFS is ok
[2025-12-02 23:11:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 23:11:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 23:11:05] Further information can be found at the LHC@home message board.
[2025-12-02 23:11:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 23:11:05] Checking for apptainer binary...
[2025-12-02 23:11:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 23:11:05] Running /usr/bin/apptainer --version
[2025-12-02 23:11:05] apptainer version 1.4.4-1.el9
[2025-12-02 23:11:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 23:11:06] c-208-39.aglt2.org
[2025-12-02 23:11:06] apptainer works
[2025-12-02 23:11:06] Set ATHENA_PROC_NUMBER=11
[2025-12-02 23:11:06] Set ATHENA_CORE_NUMBER=11
[2025-12-02 23:11:06] Starting ATLAS job with PandaID=6905333404
[2025-12-02 23:11:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 06:22:11]  *** The last 200 lines of the pilot log: ***
[2025-12-03 06:22:11] 2025-12-03 11:21:11,373 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 06:22:11] 2025-12-03 11:21:12,757 | INFO     | time since job start (25796s) is within the limit (172800.0s)
[2025-12-03 06:22:11] 2025-12-03 11:21:13,876 | INFO     | monitor loop #1523: job 0:6905333404 is in state 'finished'
[2025-12-03 06:22:11] 2025-12-03 11:21:13,876 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 06:22:11] 2025-12-03 11:21:14,767 | INFO     | time since job start (25798s) is within the limit (172800.0s)
[2025-12-03 06:22:11] 2025-12-03 11:21:16,381 | INFO     | monitor loop #1524: job 0:6905333404 is in state 'finished'
[2025-12-03 06:22:11] 2025-12-03 11:21:16,381 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 06:22:11] 2025-12-03 11:21:17,166 | INFO     | PID=3275005 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-03 06:22:11] 2025-12-03 11:21:17,166 | INFO     | .. there are 34 such processes running
[2025-12-03 06:22:11] 2025-12-03 11:21:18,169 | INFO     | time since job start (25802s) is within the limit (172800.0s)
[2025-12-03 06:22:11] 2025-12-03 11:21:18,886 | INFO     | monitor loop #1525: job 0:6905333404 is in state 'finished'
[2025-12-03 06:22:11] 2025-12-03 11:21:18,886 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 06:22:11] 2025-12-03 11:21:20,176 | INFO     | time since job start (25804s) is within the limit (172800.0s)
[2025-12-03 06:22:11] 2025-12-03 11:21:21,396 | INFO     | monitor loop #1526: job 0:6905333404 is in state 'finished'
[2025-12-03 06:22:11] 2025-12-03 11:21:21,396 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 06:22:11] 2025-12-03 11:21:21,579 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-03 06:22:11] 2025-12-03 11:21:21,587 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.9905703124996
[2025-12-03 06:22:11] 2025-12-03 11:21:21,654 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6905333404/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 06:22:11] 2025-12-03 11:21:21,655 | INFO     | extracted standard info from prmon json
[2025-12-03 06:22:11] 2025-12-03 11:21:21,655 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 06:22:11] 2025-12-03 11:21:21,655 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 06:22:11] 2025-12-03 11:21:21,678 | INFO     | fitting pss+swap vs Time
[2025-12-03 06:22:11] 2025-12-03 11:21:21,678 | INFO     | sum of square deviations: 23302933643.819954
[2025-12-03 06:22:11] 2025-12-03 11:21:21,685 | INFO     | sum of deviations: -422871723078.88116
[2025-12-03 06:22:11] 2025-12-03 11:21:21,685 | INFO     | mean x: 1764747950.0995262
[2025-12-03 06:22:11] 2025-12-03 11:21:21,685 | INFO     | mean y: 3783031.592417062
[2025-12-03 06:22:11] 2025-12-03 11:21:21,685 | INFO     | intersect: 32028163217.579098
[2025-12-03 06:22:11] 2025-12-03 11:21:21,685 | INFO     | chi2: 21.21146613306229
[2025-12-03 06:22:11] 2025-12-03 11:21:21,685 | INFO     | sum of square deviations: 22484834738.043243
[2025-12-03 06:22:11] 2025-12-03 11:21:21,692 | INFO     | sum of deviations: -231839491529.13696
[2025-12-03 06:22:11] 2025-12-03 11:21:21,692 | INFO     | mean x: 1764747797.6402879
[2025-12-03 06:22:11] 2025-12-03 11:21:21,692 | INFO     | mean y: 3818627.139088729
[2025-12-03 06:22:11] 2025-12-03 11:21:21,692 | INFO     | intersect: 18200004494.133553
[2025-12-03 06:22:11] 2025-12-03 11:21:21,692 | INFO     | chi2: 17.223770449999975
[2025-12-03 06:22:11] 2025-12-03 11:21:21,692 | INFO     | current chi2=17.223770449999975 (change=18.79971737006288 %)
[2025-12-03 06:22:11] 2025-12-03 11:21:21,692 | INFO     | right removable region: 416
[2025-12-03 06:22:11] 2025-12-03 11:21:21,693 | INFO     | sum of square deviations: 22483985136.3213
[2025-12-03 06:22:11] 2025-12-03 11:21:21,695 | INFO     | sum of deviations: -553958400272.9879
[2025-12-03 06:22:11] 2025-12-03 11:21:21,695 | INFO     | mean x: 1764748102.6378896
[2025-12-03 06:22:11] 2025-12-03 11:21:21,695 | INFO     | mean y: 3807351.695443645
[2025-12-03 06:22:11] 2025-12-03 11:21:21,695 | INFO     | intersect: 43483512123.552666
[2025-12-03 06:22:11] 2025-12-03 11:21:21,700 | INFO     | chi2: 19.440995644294013
[2025-12-03 06:22:11] 2025-12-03 11:21:21,700 | INFO     | current chi2=19.440995644294013 (change=8.346761499944826 %)
[2025-12-03 06:22:11] 2025-12-03 11:21:21,700 | INFO     | left removable region: 10
[2025-12-03 06:22:11] 2025-12-03 11:21:21,700 | INFO     | sum of square deviations: 20751393158.92621
[2025-12-03 06:22:11] 2025-12-03 11:21:21,702 | INFO     | sum of deviations: -351303422132.2463
[2025-12-03 06:22:11] 2025-12-03 11:21:21,702 | INFO     | mean x: 1764748072.2167487
[2025-12-03 06:22:11] 2025-12-03 11:21:21,703 | INFO     | mean y: 3856155.3891625614
[2025-12-03 06:22:11] 2025-12-03 11:21:21,703 | INFO     | intersect: 29879538825.12605
[2025-12-03 06:22:11] 2025-12-03 11:21:21,703 | INFO     | chi2: 14.596322259122815
[2025-12-03 06:22:11] 2025-12-03 11:21:21,703 | INFO     | current memory leak: -16.93 B/s (using 406 data points, chi2=14.60)
[2025-12-03 06:22:11] 2025-12-03 11:21:21,703 | INFO     | could have reported an average CPU frequency of 3762 MHz (17 samples)
[2025-12-03 06:22:11] 2025-12-03 11:21:21,703 | INFO     | ..............................
[2025-12-03 06:22:11] 2025-12-03 11:21:21,708 | INFO     | . Timing measurements:
[2025-12-03 06:22:11] 2025-12-03 11:21:21,708 | INFO     | . get job = 0 s
[2025-12-03 06:22:11] 2025-12-03 11:21:21,708 | INFO     | . initial setup = 2 s
[2025-12-03 06:22:11] 2025-12-03 11:21:21,708 | INFO     | . payload setup = 9 s
[2025-12-03 06:22:11] 2025-12-03 11:21:21,708 | INFO     | . stage-in = 0 s
[2025-12-03 06:22:11] 2025-12-03 11:21:21,708 | INFO     | . payload execution = 25732 s
[2025-12-03 06:22:11] 2025-12-03 11:21:21,708 | INFO     | . stage-out = 6 s
[2025-12-03 06:22:11] 2025-12-03 11:21:21,708 | INFO     | . log creation = 2 s
[2025-12-03 06:22:11] 2025-12-03 11:21:21,708 | INFO     | ..............................
[2025-12-03 06:22:11] 2025-12-03 11:21:21,826 | INFO     | 
[2025-12-03 06:22:11] 2025-12-03 11:21:21,826 | INFO     | job summary report
[2025-12-03 06:22:11] 2025-12-03 11:21:21,826 | INFO     | --------------------------------------------------
[2025-12-03 06:22:11] 2025-12-03 11:21:21,826 | INFO     | PanDA job id: 6905333404
[2025-12-03 06:22:11] 2025-12-03 11:21:21,826 | INFO     | task id: 47530725
[2025-12-03 06:22:11] 2025-12-03 11:21:21,826 | INFO     | errors: (none)
[2025-12-03 06:22:11] 2025-12-03 11:21:21,826 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 06:22:11] 2025-12-03 11:21:21,826 | INFO     | pilot state: finished 
[2025-12-03 06:22:11] 2025-12-03 11:21:21,826 | INFO     | transexitcode: 0
[2025-12-03 06:22:11] 2025-12-03 11:21:21,826 | INFO     | exeerrorcode: 0
[2025-12-03 06:22:11] 2025-12-03 11:21:21,826 | INFO     | exeerrordiag: 
[2025-12-03 06:22:11] 2025-12-03 11:21:21,826 | INFO     | exitcode: 0
[2025-12-03 06:22:11] 2025-12-03 11:21:21,826 | INFO     | exitmsg: OK
[2025-12-03 06:22:11] 2025-12-03 11:21:21,826 | INFO     | cpuconsumptiontime: 118392 s
[2025-12-03 06:22:11] 2025-12-03 11:21:21,826 | INFO     | nevents: 1000
[2025-12-03 06:22:11] 2025-12-03 11:21:21,826 | INFO     | neventsw: 0
[2025-12-03 06:22:11] 2025-12-03 11:21:21,826 | INFO     | pid: 3341918
[2025-12-03 06:22:11] 2025-12-03 11:21:21,826 | INFO     | pgrp: 3341918
[2025-12-03 06:22:11] 2025-12-03 11:21:21,826 | INFO     | corecount: 11
[2025-12-03 06:22:11] 2025-12-03 11:21:21,826 | INFO     | event service: False
[2025-12-03 06:22:11] 2025-12-03 11:21:21,827 | INFO     | sizes: {0: 2284399, 4: 2284661, 11: 2284689, 25745: 2340414, 25754: 2349408, 25755: 2349464, 25790: 2349902}
[2025-12-03 06:22:11] 2025-12-03 11:21:21,827 | INFO     | --------------------------------------------------
[2025-12-03 06:22:11] 2025-12-03 11:21:21,827 | INFO     | 
[2025-12-03 06:22:11] 2025-12-03 11:21:21,827 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-12-03 06:22:11] 2025-12-03 11:21:21,885 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 06:22:11] 2025-12-03 11:21:21,885 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 06:22:11] 2025-12-03 11:21:21,885 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 06:22:11] 2025-12-03 11:21:21,885 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 06:22:11] 2025-12-03 11:21:21,885 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 06:22:11] 2025-12-03 11:21:21,886 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 06:22:11] 2025-12-03 11:21:21,886 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 06:22:11] 2025-12-03 11:21:21,886 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 06:22:11] 2025-12-03 11:21:21,886 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 06:22:11] 2025-12-03 11:21:21,886 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 06:22:11] 2025-12-03 11:21:21,886 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 06:22:11] 2025-12-03 11:21:21,886 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 06:22:11] 2025-12-03 11:21:21,886 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 06:22:11] 2025-12-03 11:21:21,886 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 06:22:11] 2025-12-03 11:21:21,886 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 06:22:11] 2025-12-03 11:21:21,886 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 06:22:11] 2025-12-03 11:21:21,886 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 06:22:11] 2025-12-03 11:21:21,886 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 06:22:11] 2025-12-03 11:21:21,886 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 06:22:11] 2025-12-03 11:21:21,886 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 06:22:11] 2025-12-03 11:21:21,886 | INFO     | job 6905333404 has completed (purged errors)
[2025-12-03 06:22:11] 2025-12-03 11:21:21,886 | INFO     | overall cleanup function is called
[2025-12-03 06:22:11] 2025-12-03 11:21:22,910 | INFO     | --- collectZombieJob: --- 10, [3341918]
[2025-12-03 06:22:11] 2025-12-03 11:21:22,910 | INFO     | zombie collector waiting for pid 3341918
[2025-12-03 06:22:11] 2025-12-03 11:21:22,910 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 06:22:11] 2025-12-03 11:21:22,910 | INFO     | collected zombie processes
[2025-12-03 06:22:11] 2025-12-03 11:21:22,910 | INFO     | will attempt to kill all subprocesses of pid=3341918
[2025-12-03 06:22:11] 2025-12-03 11:21:24,179 | INFO     | process IDs to be killed: [3341918] (in reverse order)
[2025-12-03 06:22:11] 2025-12-03 11:21:25,243 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 06:22:11] 2025-12-03 11:21:25,243 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 06:22:11] 2025-12-03 11:21:25,299 | INFO     | did not find any defunct processes belonging to 3341918
[2025-12-03 06:22:11] 2025-12-03 11:21:25,342 | INFO     | did not find any defunct processes belonging to 3341918
[2025-12-03 06:22:11] 2025-12-03 11:21:25,343 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 06:22:11] 2025-12-03 11:21:25,343 | INFO     | ready for new job
[2025-12-03 06:22:11] 2025-12-03 11:21:25,343 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 06:22:11] 2025-12-03 11:21:25,344 | INFO     | ***************************************
[2025-12-03 06:22:11] 2025-12-03 11:21:25,344 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 06:22:11] 2025-12-03 11:21:25,344 | INFO     | ***************************************
[2025-12-03 06:22:11] 2025-12-03 11:21:25,344 | INFO     | 
[2025-12-03 06:22:11] 2025-12-03 11:21:25,349 | INFO     | architecture information:
[2025-12-03 06:22:11] 2025-12-03 11:21:25,349 | INFO     | executing command: cat /etc/os-release
[2025-12-03 06:22:11] 2025-12-03 11:21:25,409 | INFO     | cat /etc/os-release:
[2025-12-03 06:22:11] NAME="CentOS Linux"
[2025-12-03 06:22:11] VERSION="7 (Core)"
[2025-12-03 06:22:11] ID="centos"
[2025-12-03 06:22:11] ID_LIKE="rhel fedora"
[2025-12-03 06:22:11] VERSION_ID="7"
[2025-12-03 06:22:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 06:22:11] ANSI_COLOR="0;31"
[2025-12-03 06:22:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 06:22:11] HOME_URL="https://www.centos.org/"
[2025-12-03 06:22:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 06:22:11] 
[2025-12-03 06:22:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 06:22:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 06:22:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 06:22:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 06:22:11] 
[2025-12-03 06:22:11] 2025-12-03 11:21:25,409 | INFO     | ***************************************
[2025-12-03 06:22:11] 2025-12-03 11:21:25,928 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-12-03 06:22:11] 2025-12-03 11:21:25,983 | INFO     | sufficient remaining disk space (162557591552 B)
[2025-12-03 06:22:11] 2025-12-03 11:21:25,983 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 06:22:11] 2025-12-03 11:21:25,983 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 06:22:11] 2025-12-03 11:21:25,983 | INFO     | update_server=False
[2025-12-03 06:22:11] 2025-12-03 11:21:25,983 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 06:22:11] 2025-12-03 11:21:26,096 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 06:22:11] 2025-12-03 11:21:26,452 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-03 06:22:11] 2025-12-03 11:21:26,452 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-03 06:22:11] 2025-12-03 11:21:26,452 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 06:22:11] 2025-12-03 11:21:26,452 | INFO     | will abort loop
[2025-12-03 06:22:11] 2025-12-03 11:21:26,553 | INFO     | all data control threads have been joined
[2025-12-03 06:22:11] 2025-12-03 11:21:26,837 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 06:22:11] 2025-12-03 11:21:26,989 | INFO     | [job] retrieve thread has finished
[2025-12-03 06:22:11] 2025-12-03 11:21:27,014 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 06:22:11] 2025-12-03 11:21:27,032 | INFO     | [job] validate thread has finished
[2025-12-03 06:22:11] 2025-12-03 11:21:27,083 | INFO     | all payload control threads have been joined
[2025-12-03 06:22:11] 2025-12-03 11:21:27,363 | INFO     | all job control threads have been joined
[2025-12-03 06:22:11] 2025-12-03 11:21:27,376 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 06:22:11] 2025-12-03 11:21:27,458 | INFO     | [job] job monitor thread has finished
[2025-12-03 06:22:11] 2025-12-03 11:21:27,559 | INFO     | [data] control thread has finished
[2025-12-03 06:22:11] 2025-12-03 11:21:27,590 | INFO     | [data] copytool_in thread has finished
[2025-12-03 06:22:11] 2025-12-03 11:21:27,843 | INFO     | [job] queue monitor thread has finished
[2025-12-03 06:22:11] 2025-12-03 11:21:28,071 | INFO     | [payload] failed_post thread has finished
[2025-12-03 06:22:11] 2025-12-03 11:21:28,103 | INFO     | [payload] control thread has finished
[2025-12-03 06:22:11] 2025-12-03 11:21:28,103 | INFO     | [data] copytool_out thread has finished
[2025-12-03 06:22:11] 2025-12-03 11:21:28,128 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 06:22:11] 2025-12-03 11:21:28,128 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 06:22:11] 2025-12-03 11:21:28,210 | INFO     | [payload] validate_post thread has finished
[2025-12-03 06:22:11] 2025-12-03 11:21:28,369 | INFO     | [job] control thread has finished
[2025-12-03 06:22:11] 2025-12-03 11:21:28,745 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 06:22:11] 2025-12-03 11:21:32,754 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 06:22:11] 2025-12-03 11:21:55,264 | INFO     | PID=3275005 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-03 06:22:11] 2025-12-03 11:21:55,264 | INFO     | .. there are 33 such processes running
[2025-12-03 06:22:11] 2025-12-03 11:21:55,265 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 06:22:11] 2025-12-03 11:21:55,265 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 06:22:11] 2025-12-03 11:21:55,265 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 06:22:11] 2025-12-03 11:22:03,265 | INFO     | [monitor] cgroup control has ended
[2025-12-03 06:22:11] 2025-12-03 11:22:04,843 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140649373976384)>', '<ExcThread(monitor, started 140648762042112)>']
[2025-12-03 06:22:11] 2025-12-03 11:22:05,326 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 06:22:11] 2025-12-03 11:22:05,361 | INFO     | [monitor] control thread has ended
[2025-12-03 06:22:11] 2025-12-03 11:22:09,868 | INFO     | all workflow threads have been joined
[2025-12-03 06:22:11] 2025-12-03 11:22:09,868 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 06:22:11] 2025-12-03 11:22:09,868 | INFO     | traces error code: 0
[2025-12-03 06:22:11] 2025-12-03 11:22:09,868 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 06:22:11] 2025-12-03 11:22:10,198 [wrapper] ==== pilot stdout END ====
[2025-12-03 06:22:11] 2025-12-03 11:22:10,226 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 06:22:11] 2025-12-03 11:22:10,269 [wrapper] pilotpid: 3275005
[2025-12-03 06:22:11] 2025-12-03 11:22:10,291 [wrapper] Pilot exit status: 0
[2025-12-03 06:22:11] 2025-12-03 11:22:10,453 [wrapper] pandaids: 6905333404 6905333404
[2025-12-03 06:22:11] 2025-12-03 11:22:10,677 [wrapper] cleanup supervisor_pilot 3789729 3275006
[2025-12-03 06:22:11] 2025-12-03 11:22:10,725 [wrapper] Test setup, not cleaning
[2025-12-03 06:22:11] 2025-12-03 11:22:10,782 [wrapper] apfmon messages muted
[2025-12-03 06:22:11] 2025-12-03 11:22:10,820 [wrapper] ==== wrapper stdout END ====
[2025-12-03 06:22:11] 2025-12-03 11:22:10,827 [wrapper] ==== wrapper stderr END ====
[2025-12-03 06:22:11]  *** Error codes and diagnostics ***
[2025-12-03 06:22:11]     "exeErrorCode": 0,
[2025-12-03 06:22:11]     "exeErrorDiag": "",
[2025-12-03 06:22:11]     "pilotErrorCode": 0,
[2025-12-03 06:22:11]     "pilotErrorDiag": "",
[2025-12-03 06:22:11]  *** Listing of results directory ***
[2025-12-03 06:22:11] total 1419684
[2025-12-03 06:22:11] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-12-03 06:22:11] -rwx------. 1 boincer umatlas     36292 Nov 29 19:21 runpilot2-wrapper.sh
[2025-12-03 06:22:11] -rw-r--r--. 1 boincer umatlas    576529 Nov 29 19:24 pilot3.tar.gz
[2025-12-03 06:22:11] -rw-r--r--. 1 boincer umatlas      5112 Nov 29 19:24 queuedata.json
[2025-12-03 06:22:11] -rw-r--r--. 1 boincer umatlas       100 Dec  2 16:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 06:22:11] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  2 16:45 run_atlas
[2025-12-03 06:22:11] -rw-r--r--. 1 boincer umatlas       105 Dec  2 16:45 job.xml
[2025-12-03 06:22:11] -rw-r--r--. 3 boincer umatlas 376967574 Dec  2 16:45 EVNT.47530720._000082.pool.root.1
[2025-12-03 06:22:11] -rw-r--r--. 3 boincer umatlas 376967574 Dec  2 16:45 ATLAS.root_0
[2025-12-03 06:22:11] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 16:45 start_atlas.sh
[2025-12-03 06:22:11] drwxrwx--x. 2 boincer umatlas      4096 Dec  2 16:45 shared
[2025-12-03 06:22:11] -rw-r--r--. 2 boincer umatlas    590138 Dec  2 16:45 input.tar.gz
[2025-12-03 06:22:11] -rw-r--r--. 1 boincer umatlas         0 Dec  2 16:45 boinc_lockfile
[2025-12-03 06:22:11] -rw-r--r--. 1 boincer umatlas      2878 Dec  2 23:11 pandaJob.out
[2025-12-03 06:22:11] -rw-------. 1 boincer umatlas        57 Dec  2 23:11 setup.sh.local
[2025-12-03 06:22:11] -rw-------. 1 boincer umatlas    989300 Dec  2 23:11 agis_schedconf.cvmfs.json
[2025-12-03 06:22:11] -rw-r--r--. 1 boincer umatlas       532 Dec  3 05:52 boinc_task_state.xml
[2025-12-03 06:22:11] -rw-r--r--. 1 boincer umatlas      7176 Dec  3 06:18 init_data.xml
[2025-12-03 06:22:11] -rw-------. 1 boincer umatlas 685171155 Dec  3 06:19 HITS.47530725._002199.pool.root.1
[2025-12-03 06:22:11] -rw-------. 1 boincer umatlas      1070 Dec  3 06:20 memory_monitor_summary.json
[2025-12-03 06:22:11] -rw-------. 1 boincer umatlas   1516240 Dec  3 06:20 agis_ddmendpoints.agis.ALL.json
[2025-12-03 06:22:11] -rw-------. 1 boincer umatlas   2106408 Dec  3 06:20 log.47530725._002199.job.log.tgz.1
[2025-12-03 06:22:11] -rw-------. 1 boincer umatlas     27768 Dec  3 06:21 heartbeat.json
[2025-12-03 06:22:11] -rw-------. 1 boincer umatlas        96 Dec  3 06:21 pilot_heartbeat.json
[2025-12-03 06:22:11] -rw-------. 1 boincer umatlas      5011 Dec  3 06:22 pilotlog.txt
[2025-12-03 06:22:11] -rw-r--r--. 1 boincer umatlas      8192 Dec  3 06:22 boinc_mmap_file
[2025-12-03 06:22:11] -rw-------. 1 boincer umatlas   3237674 Dec  3 06:22 log.47530725._002199.job.log.1
[2025-12-03 06:22:11] -rw-------. 1 boincer umatlas       353 Dec  3 06:22 output.list
[2025-12-03 06:22:11] -rw-r--r--. 1 boincer umatlas        29 Dec  3 06:22 wrapper_checkpoint.txt
[2025-12-03 06:22:11] -rw-r--r--. 1 boincer umatlas       620 Dec  3 06:22 runtime_log
[2025-12-03 06:22:11] -rw-------. 1 boincer umatlas   5386240 Dec  3 06:22 result.tar.gz
[2025-12-03 06:22:11] -rw-r--r--. 1 boincer umatlas      9430 Dec  3 06:22 runtime_log.err
[2025-12-03 06:22:11] -rw-------. 1 boincer umatlas       791 Dec  3 06:22 d6ENDmtMkj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm2XPKDmSqf9Sm.diag
[2025-12-03 06:22:11] -rw-r--r--. 1 boincer umatlas     24130 Dec  3 06:22 stderr.txt
[2025-12-03 06:22:11] HITS file was successfully produced:
[2025-12-03 06:22:11] -rw-------. 1 boincer umatlas 685171155 Dec  3 06:19 shared/HITS.pool.root.1
[2025-12-03 06:22:11]  *** Contents of shared directory: ***
[2025-12-03 06:22:11] total 1043112
[2025-12-03 06:22:11] -rw-r--r--. 3 boincer umatlas 376967574 Dec  2 16:45 ATLAS.root_0
[2025-12-03 06:22:11] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 16:45 start_atlas.sh
[2025-12-03 06:22:11] -rw-r--r--. 2 boincer umatlas    590138 Dec  2 16:45 input.tar.gz
[2025-12-03 06:22:11] -rw-------. 1 boincer umatlas 685171155 Dec  3 06:19 HITS.pool.root.1
[2025-12-03 06:22:11] -rw-------. 1 boincer umatlas   5386240 Dec  3 06:22 result.tar.gz
06:22:13 (3253970): run_atlas exited; CPU time 118621.786005
06:22:13 (3253970): called boinc_finish(0)

</stderr_txt>
]]>

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