Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
00:27:22 (5439): wrapper (7.7.26015): starting
00:27:22 (5439): wrapper: running run_atlas (--nthreads 8)
[2025-12-03 00:27:22] Arguments: --nthreads 8
[2025-12-03 00:27:22] Threads: 8
[2025-12-03 00:27:22] Checking for CVMFS
[2025-12-03 00:27:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 00:27:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 00:27:22] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 00:27:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 00:27:22] 2.11.0.0 3942 75239 93032 153574 2 186 2656353 4096000 1386 130560 3 9282811 99.495 8019657 692 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-03 00:27:22] CVMFS is ok
[2025-12-03 00:27:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-03 00:27:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-03 00:27:22] Further information can be found at the LHC@home message board.
[2025-12-03 00:27:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 00:27:22] Checking for apptainer binary...
[2025-12-03 00:27:22] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-03 00:27:22] apptainer is not installed, using version from CVMFS
[2025-12-03 00:27:22] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 00:27:22] WARNING: Environment variable TMPDIR already has value [/tmp/job_10946084/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node259
[2025-12-03 00:27:22] apptainer works
[2025-12-03 00:27:22] Set ATHENA_PROC_NUMBER=8
[2025-12-03 00:27:22] Set ATHENA_CORE_NUMBER=8
[2025-12-03 00:27:22] Starting ATLAS job with PandaID=6908987435
[2025-12-03 00:27:22] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10946084/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 01:18:37]  *** The last 200 lines of the pilot log: ***
[2025-12-03 01:18:37]  status_code=0
[2025-12-03 01:18:37]  storage_token=
[2025-12-03 01:18:37]  surl=/tmp/job_10946084/atlas/pilot/slots/0/PanDA_Pilot-6908987435/log.46965017._001593.job.log.tgz.1
[2025-12-03 01:18:37]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4c/66/log.46965017._001593.job.log.tgz.1
[2025-12-03 01:18:37]  workdir=None
[2025-12-03 01:18:37] ]
[2025-12-03 01:18:37] 2025-12-03 00:17:52,909 | INFO     | transferring file log.46965017._001593.job.log.tgz.1 from /tmp/job_10946084/atlas/pilot/slots/0/PanDA_Pilot-6908987435/log.46965017._001593.job.log.tgz.1 to /tmp/j
[2025-12-03 01:18:37] 2025-12-03 00:17:52,909 | INFO     | executing command: /usr/bin/env mv /tmp/job_10946084/atlas/pilot/slots/0/PanDA_Pilot-6908987435/log.46965017._001593.job.log.tgz.1 /tmp/job_10946084/atlas/pilot/sl
[2025-12-03 01:18:37] 2025-12-03 00:17:52,917 | INFO     | adding to output.list: log.46965017._001593.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4c/66/log.46965017._001593.job.log.tg
[2025-12-03 01:18:37] 2025-12-03 00:17:52,918 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-03 01:18:37] 2025-12-03 00:17:52,918 | INFO     | summary of transferred files:
[2025-12-03 01:18:37] 2025-12-03 00:17:52,918 | INFO     |  -- lfn=log.46965017._001593.job.log.tgz.1, status_code=0, status=transferred
[2025-12-03 01:18:37] 2025-12-03 00:17:52,918 | INFO     | stage-out finished correctly
[2025-12-03 01:18:37] 2025-12-03 00:17:52,918 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 01:18:37] 2025-12-03 00:17:53,380 | INFO     | time since job start (3026s) is within the limit (172800.0s)
[2025-12-03 01:18:37] 2025-12-03 00:17:53,592 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-03 01:18:37] 2025-12-03 00:17:55,385 | INFO     | time since job start (3028s) is within the limit (172800.0s)
[2025-12-03 01:18:37] 2025-12-03 00:17:56,361 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 01:18:37] 2025-12-03 00:17:56,361 | INFO     | job 6908987435 has state=finished
[2025-12-03 01:18:37] 2025-12-03 00:17:56,361 | INFO     | preparing for final server update for job 6908987435 in state='finished'
[2025-12-03 01:18:37] 2025-12-03 00:17:56,361 | INFO     | this job has now completed (state=finished)
[2025-12-03 01:18:37] 2025-12-03 00:17:56,361 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-03 01:18:37] 2025-12-03 00:17:56,361 | INFO     | log transfer has been attempted: DONE
[2025-12-03 01:18:37] 2025-12-03 00:17:56,361 | INFO     | job 6908987435 has finished - writing final server update
[2025-12-03 01:18:37] 2025-12-03 00:17:56,361 | INFO     | total number of processed events: 400 (read)
[2025-12-03 01:18:37] 2025-12-03 00:17:56,362 | INFO     | executing command: lscpu
[2025-12-03 01:18:37] 2025-12-03 00:17:56,391 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-03 01:18:37] 2025-12-03 00:17:57,367 | WARNING  | process 18476 can no longer be monitored (due to stat problems) - aborting
[2025-12-03 01:18:37] 2025-12-03 00:17:57,367 | INFO     | using path: /tmp/job_10946084/atlas/pilot/slots/0/PanDA_Pilot-6908987435/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 01:18:37] 2025-12-03 00:17:57,391 | INFO     | time since job start (3030s) is within the limit (172800.0s)
[2025-12-03 01:18:37] 2025-12-03 00:17:57,471 | INFO     | number of running child processes to parent process 18476: 1
[2025-12-03 01:18:37] 2025-12-03 00:17:57,471 | INFO     | maximum number of monitored processes: 6
[2025-12-03 01:18:37] 2025-12-03 00:17:58,113 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 01:18:37] 2025-12-03 00:17:58,130 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2676.791859375
[2025-12-03 01:18:37] 2025-12-03 00:17:58,135 | INFO     | using path: /tmp/job_10946084/atlas/pilot/slots/0/PanDA_Pilot-6908987435/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 01:18:37] 2025-12-03 00:17:58,135 | INFO     | extracted standard info from prmon json
[2025-12-03 01:18:37] 2025-12-03 00:17:58,135 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 01:18:37] 2025-12-03 00:17:58,135 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 01:18:37] 2025-12-03 00:17:58,135 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-03 01:18:37] 2025-12-03 00:17:58,135 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-03 01:18:37] 2025-12-03 00:17:58,136 | INFO     | fitting pss+swap vs Time
[2025-12-03 01:18:37] 2025-12-03 00:17:58,136 | INFO     | sum of square deviations: 24640462.0
[2025-12-03 01:18:37] 2025-12-03 00:17:58,136 | INFO     | sum of deviations: 77071121.00000009
[2025-12-03 01:18:37] 2025-12-03 00:17:58,136 | INFO     | mean x: 1764719650.0
[2025-12-03 01:18:37] 2025-12-03 00:17:58,136 | INFO     | mean y: 2642970.302325581
[2025-12-03 01:18:37] 2025-12-03 00:17:58,136 | INFO     | intersect: -5517096135.085708
[2025-12-03 01:18:37] 2025-12-03 00:17:58,136 | INFO     | chi2: 0.004119069052894803
[2025-12-03 01:18:37] 2025-12-03 00:17:58,137 | INFO     | current memory leak: 3.13 B/s (using 43 data points, chi2=0.00)
[2025-12-03 01:18:37] 2025-12-03 00:17:58,137 | INFO     | could have reported an average CPU frequency of 2529 MHz (5 samples)
[2025-12-03 01:18:37] 2025-12-03 00:17:58,137 | INFO     | ..............................
[2025-12-03 01:18:37] 2025-12-03 00:17:58,137 | INFO     | . Timing measurements:
[2025-12-03 01:18:37] 2025-12-03 00:17:58,137 | INFO     | . get job = 0 s
[2025-12-03 01:18:37] 2025-12-03 00:17:58,137 | INFO     | . initial setup = 1 s
[2025-12-03 01:18:37] 2025-12-03 00:17:58,137 | INFO     | . payload setup = 2 s
[2025-12-03 01:18:37] 2025-12-03 00:17:58,137 | INFO     | . stage-in = 0 s
[2025-12-03 01:18:37] 2025-12-03 00:17:58,137 | INFO     | . payload execution = 3007 s
[2025-12-03 01:18:37] 2025-12-03 00:17:58,137 | INFO     | . stage-out = 0 s
[2025-12-03 01:18:37] 2025-12-03 00:17:58,137 | INFO     | . log creation = 0 s
[2025-12-03 01:18:37] 2025-12-03 00:17:58,137 | INFO     | ..............................
[2025-12-03 01:18:37] 2025-12-03 00:17:58,185 | INFO     | 
[2025-12-03 01:18:37] 2025-12-03 00:17:58,185 | INFO     | job summary report
[2025-12-03 01:18:37] 2025-12-03 00:17:58,185 | INFO     | --------------------------------------------------
[2025-12-03 01:18:37] 2025-12-03 00:17:58,185 | INFO     | PanDA job id: 6908987435
[2025-12-03 01:18:37] 2025-12-03 00:17:58,185 | INFO     | task id: 46965017
[2025-12-03 01:18:37] 2025-12-03 00:17:58,185 | INFO     | errors: (none)
[2025-12-03 01:18:37] 2025-12-03 00:17:58,185 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 01:18:37] 2025-12-03 00:17:58,185 | INFO     | pilot state: finished 
[2025-12-03 01:18:37] 2025-12-03 00:17:58,186 | INFO     | transexitcode: 0
[2025-12-03 01:18:37] 2025-12-03 00:17:58,186 | INFO     | exeerrorcode: 0
[2025-12-03 01:18:37] 2025-12-03 00:17:58,186 | INFO     | exeerrordiag: 
[2025-12-03 01:18:37] 2025-12-03 00:17:58,186 | INFO     | exitcode: 0
[2025-12-03 01:18:37] 2025-12-03 00:17:58,186 | INFO     | exitmsg: OK
[2025-12-03 01:18:37] 2025-12-03 00:17:58,186 | INFO     | cpuconsumptiontime: 21811 s
[2025-12-03 01:18:37] 2025-12-03 00:17:58,186 | INFO     | nevents: 400
[2025-12-03 01:18:37] 2025-12-03 00:17:58,186 | INFO     | neventsw: 0
[2025-12-03 01:18:37] 2025-12-03 00:17:58,186 | INFO     | pid: 18476
[2025-12-03 01:18:37] 2025-12-03 00:17:58,186 | INFO     | pgrp: 18476
[2025-12-03 01:18:37] 2025-12-03 00:17:58,186 | INFO     | corecount: 8
[2025-12-03 01:18:37] 2025-12-03 00:17:58,186 | INFO     | event service: False
[2025-12-03 01:18:37] 2025-12-03 00:17:58,186 | INFO     | sizes: {0: 2284106, 2: 2284368, 11: 2284396, 3013: 2318949, 3014: 2318949, 3019: 2319175}
[2025-12-03 01:18:37] 2025-12-03 00:17:58,186 | INFO     | --------------------------------------------------
[2025-12-03 01:18:37] 2025-12-03 00:17:58,186 | INFO     | 
[2025-12-03 01:18:37] 2025-12-03 00:17:58,186 | INFO     | executing command: ls -lF /tmp/job_10946084/atlas/pilot/slots/0
[2025-12-03 01:18:37] 2025-12-03 00:17:58,196 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 01:18:37] 2025-12-03 00:17:58,196 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 01:18:37] 2025-12-03 00:17:58,196 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 01:18:37] 2025-12-03 00:17:58,196 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 01:18:37] 2025-12-03 00:17:58,196 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 01:18:37] 2025-12-03 00:17:58,196 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 01:18:37] 2025-12-03 00:17:58,196 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 01:18:37] 2025-12-03 00:17:58,196 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 01:18:37] 2025-12-03 00:17:58,196 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 01:18:37] 2025-12-03 00:17:58,196 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 01:18:37] 2025-12-03 00:17:58,196 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 01:18:37] 2025-12-03 00:17:58,197 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 01:18:37] 2025-12-03 00:17:58,197 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 01:18:37] 2025-12-03 00:17:58,197 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 01:18:37] 2025-12-03 00:17:58,197 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 01:18:37] 2025-12-03 00:17:58,197 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 01:18:37] 2025-12-03 00:17:58,197 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 01:18:37] 2025-12-03 00:17:58,197 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 01:18:37] 2025-12-03 00:17:58,197 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 01:18:37] 2025-12-03 00:17:58,197 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 01:18:37] 2025-12-03 00:17:58,197 | INFO     | job 6908987435 has completed (purged errors)
[2025-12-03 01:18:37] 2025-12-03 00:17:58,197 | INFO     | overall cleanup function is called
[2025-12-03 01:18:37] 2025-12-03 00:17:58,526 | INFO     | PID=10224 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-03 01:18:37] 2025-12-03 00:17:58,526 | INFO     | .. there are 5 such processes running
[2025-12-03 01:18:37] 2025-12-03 00:17:59,203 | INFO     | --- collectZombieJob: --- 10, [18476]
[2025-12-03 01:18:37] 2025-12-03 00:17:59,203 | INFO     | zombie collector waiting for pid 18476
[2025-12-03 01:18:37] 2025-12-03 00:17:59,203 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 01:18:37] 2025-12-03 00:17:59,203 | INFO     | collected zombie processes
[2025-12-03 01:18:37] 2025-12-03 00:17:59,203 | INFO     | will attempt to kill all subprocesses of pid=18476
[2025-12-03 01:18:37] 2025-12-03 00:17:59,308 | INFO     | process IDs to be killed: [18476] (in reverse order)
[2025-12-03 01:18:37] 2025-12-03 00:17:59,346 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 01:18:37] 2025-12-03 00:17:59,346 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 01:18:37] 2025-12-03 00:17:59,350 | INFO     | did not find any defunct processes belonging to 18476
[2025-12-03 01:18:37] 2025-12-03 00:17:59,354 | INFO     | did not find any defunct processes belonging to 18476
[2025-12-03 01:18:37] 2025-12-03 00:17:59,354 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 01:18:37] 2025-12-03 00:17:59,354 | INFO     | ready for new job
[2025-12-03 01:18:37] 2025-12-03 00:17:59,354 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 01:18:37] 2025-12-03 00:17:59,355 | INFO     | ***************************************
[2025-12-03 01:18:37] 2025-12-03 00:17:59,355 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 01:18:37] 2025-12-03 00:17:59,355 | INFO     | ***************************************
[2025-12-03 01:18:37] 2025-12-03 00:17:59,355 | INFO     | 
[2025-12-03 01:18:37] 2025-12-03 00:17:59,368 | INFO     | architecture information:
[2025-12-03 01:18:37] 2025-12-03 00:17:59,368 | INFO     | executing command: cat /etc/os-release
[2025-12-03 01:18:37] 2025-12-03 00:17:59,375 | INFO     | cat /etc/os-release:
[2025-12-03 01:18:37] NAME="CentOS Linux"
[2025-12-03 01:18:37] VERSION="7 (Core)"
[2025-12-03 01:18:37] ID="centos"
[2025-12-03 01:18:37] ID_LIKE="rhel fedora"
[2025-12-03 01:18:37] VERSION_ID="7"
[2025-12-03 01:18:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 01:18:37] ANSI_COLOR="0;31"
[2025-12-03 01:18:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 01:18:37] HOME_URL="https://www.centos.org/"
[2025-12-03 01:18:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 01:18:37] 
[2025-12-03 01:18:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 01:18:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 01:18:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 01:18:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 01:18:37] 
[2025-12-03 01:18:37] 2025-12-03 00:17:59,375 | INFO     | ***************************************
[2025-12-03 01:18:37] 2025-12-03 00:17:59,878 | INFO     | executing command: df -mP /tmp/job_10946084/atlas/pilot/slots/0
[2025-12-03 01:18:37] 2025-12-03 00:17:59,885 | INFO     | sufficient remaining disk space (224639582208 B)
[2025-12-03 01:18:37] 2025-12-03 00:17:59,885 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 01:18:37] 2025-12-03 00:17:59,885 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 01:18:37] 2025-12-03 00:17:59,885 | INFO     | update_server=False
[2025-12-03 01:18:37] 2025-12-03 00:17:59,885 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 01:18:37] 2025-12-03 00:17:59,885 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 01:18:37] 2025-12-03 00:17:59,885 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 01:18:37] 2025-12-03 00:17:59,974 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-03 01:18:37] 2025-12-03 00:17:59,974 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-03 01:18:37] 2025-12-03 00:17:59,974 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 01:18:37] 2025-12-03 00:17:59,974 | INFO     | will abort loop
[2025-12-03 01:18:37] 2025-12-03 00:17:59,978 | INFO     | all payload control threads have been joined
[2025-12-03 01:18:37] 2025-12-03 00:18:00,843 | INFO     | all data control threads have been joined
[2025-12-03 01:18:37] 2025-12-03 00:18:00,890 | INFO     | [job] queue monitor thread has finished
[2025-12-03 01:18:37] 2025-12-03 00:18:00,890 | INFO     | [job] retrieve thread has finished
[2025-12-03 01:18:37] 2025-12-03 00:18:00,979 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 01:18:37] 2025-12-03 00:18:00,979 | INFO     | [job] job monitor thread has finished
[2025-12-03 01:18:37] 2025-12-03 00:18:00,983 | INFO     | [payload] control thread has finished
[2025-12-03 01:18:37] 2025-12-03 00:18:01,013 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 01:18:37] 2025-12-03 00:18:01,052 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 01:18:37] 2025-12-03 00:18:01,249 | INFO     | [data] copytool_in thread has finished
[2025-12-03 01:18:37] 2025-12-03 00:18:01,342 | INFO     | all job control threads have been joined
[2025-12-03 01:18:37] 2025-12-03 00:18:01,561 | INFO     | [payload] validate_post thread has finished
[2025-12-03 01:18:37] 2025-12-03 00:18:01,665 | INFO     | [payload] failed_post thread has finished
[2025-12-03 01:18:37] 2025-12-03 00:18:01,848 | INFO     | [data] control thread has finished
[2025-12-03 01:18:37] 2025-12-03 00:18:02,139 | INFO     | [job] validate thread has finished
[2025-12-03 01:18:37] 2025-12-03 00:18:02,347 | INFO     | [job] control thread has finished
[2025-12-03 01:18:37] 2025-12-03 00:18:02,373 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 01:18:37] 2025-12-03 00:18:02,984 | INFO     | [data] copytool_out thread has finished
[2025-12-03 01:18:37] 2025-12-03 00:18:03,891 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 01:18:37] 2025-12-03 00:18:10,382 | INFO     | job.realtimelogging is not enabled
[2025-12-03 01:18:37] 2025-12-03 00:18:11,387 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 01:18:37] 2025-12-03 00:18:30,715 | INFO     | PID=10224 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-03 01:18:37] 2025-12-03 00:18:30,715 | INFO     | .. there are 5 such processes running
[2025-12-03 01:18:37] 2025-12-03 00:18:30,715 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 01:18:37] 2025-12-03 00:18:30,715 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 01:18:37] 2025-12-03 00:18:30,716 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 01:18:37] 2025-12-03 00:18:31,567 | INFO     | [monitor] cgroup control has ended
[2025-12-03 01:18:37] 2025-12-03 00:18:32,327 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456065021696)>']
[2025-12-03 01:18:37] 2025-12-03 00:18:32,726 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 01:18:37] 2025-12-03 00:18:32,726 | INFO     | [monitor] control thread has ended
[2025-12-03 01:18:37] 2025-12-03 00:18:37,352 | INFO     | all workflow threads have been joined
[2025-12-03 01:18:37] 2025-12-03 00:18:37,352 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 01:18:37] 2025-12-03 00:18:37,353 | INFO     | traces error code: 0
[2025-12-03 01:18:37] 2025-12-03 00:18:37,353 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 01:18:37] 2025-12-03 00:18:37,404 [wrapper] ==== pilot stdout END ====
[2025-12-03 01:18:37] 2025-12-03 00:18:37,406 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 01:18:37] 2025-12-03 00:18:37,407 [wrapper] pilotpid: 10224
[2025-12-03 01:18:37] 2025-12-03 00:18:37,408 [wrapper] Pilot exit status: 0
[2025-12-03 01:18:37] 2025-12-03 00:18:37,412 [wrapper] pandaids: 6908987435
[2025-12-03 01:18:37] 2025-12-03 00:18:37,436 [wrapper] cleanup supervisor_pilot  9041 10225
[2025-12-03 01:18:37] 2025-12-03 00:18:37,438 [wrapper] Test setup, not cleaning
[2025-12-03 01:18:37] 2025-12-03 00:18:37,439 [wrapper] apfmon messages muted
[2025-12-03 01:18:37] 2025-12-03 00:18:37,440 [wrapper] ==== wrapper stdout END ====
[2025-12-03 01:18:37] 2025-12-03 00:18:37,441 [wrapper] ==== wrapper stderr END ====
[2025-12-03 01:18:37]  *** Error codes and diagnostics ***
[2025-12-03 01:18:37]     "exeErrorCode": 0,
[2025-12-03 01:18:37]     "exeErrorDiag": "",
[2025-12-03 01:18:37]     "pilotErrorCode": 0,
[2025-12-03 01:18:37]     "pilotErrorDiag": "",
[2025-12-03 01:18:37]  *** Listing of results directory ***
[2025-12-03 01:18:37] total 464784
[2025-12-03 01:18:37] -rw------- 1 mf493845 unix-user    576529 Nov 30 12:05 pilot3.tar.gz
[2025-12-03 01:18:37] -rwx------ 1 mf493845 unix-user     36292 Nov 30 12:08 runpilot2-wrapper.sh
[2025-12-03 01:18:37] -rw------- 1 mf493845 unix-user      5112 Nov 30 12:08 queuedata.json
[2025-12-03 01:18:37] -rw------- 1 mf493845 unix-user       100 Dec  2 23:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 01:18:37] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  2 23:17 run_atlas
[2025-12-03 01:18:37] -rw------- 1 mf493845 unix-user       105 Dec  2 23:17 job.xml
[2025-12-03 01:18:37] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 00:27 start_atlas.sh
[2025-12-03 01:18:37] drwxrwx--x 2 mf493845 unix-user       100 Dec  3 00:27 shared
[2025-12-03 01:18:37] -rw-r--r-- 2 mf493845 unix-user    589975 Dec  3 00:27 input.tar.gz
[2025-12-03 01:18:37] -rw------- 1 mf493845 unix-user      6389 Dec  3 00:27 init_data.xml
[2025-12-03 01:18:37] -rw-r--r-- 2 mf493845 unix-user 273993791 Dec  3 00:27 EVNT.46965009._000061.pool.root.1
[2025-12-03 01:18:37] -rw------- 1 mf493845 unix-user         0 Dec  3 00:27 boinc_setup_complete
[2025-12-03 01:18:37] -rw------- 1 mf493845 unix-user      8192 Dec  3 00:27 boinc_mmap_file
[2025-12-03 01:18:37] -rw------- 1 mf493845 unix-user         0 Dec  3 00:27 boinc_lockfile
[2025-12-03 01:18:37] -rw------- 1 mf493845 unix-user      2652 Dec  3 00:27 pandaJob.out
[2025-12-03 01:18:37] -rw------- 1 mf493845 unix-user    989284 Dec  3 00:27 agis_schedconf.cvmfs.json
[2025-12-03 01:18:37] -rw------- 1 mf493845 unix-user   1516240 Dec  3 00:27 agis_ddmendpoints.agis.ALL.json
[2025-12-03 01:18:37] drwx------ 5 mf493845 unix-user       440 Dec  3 00:27 pilot3
[2025-12-03 01:18:37] -rw------- 1 mf493845 unix-user 196465133 Dec  3 01:17 HITS.46965017._001593.pool.root.1
[2025-12-03 01:18:37] -rw------- 1 mf493845 unix-user      1015 Dec  3 01:17 memory_monitor_summary.json
[2025-12-03 01:18:37] -rw------- 1 mf493845 unix-user    313373 Dec  3 01:17 log.46965017._001593.job.log.tgz.1
[2025-12-03 01:18:37] -rw------- 1 mf493845 unix-user      7762 Dec  3 01:17 heartbeat.json
[2025-12-03 01:18:37] -rw------- 1 mf493845 unix-user        95 Dec  3 01:18 pilot_heartbeat.json
[2025-12-03 01:18:37] -rw------- 1 mf493845 unix-user      5093 Dec  3 01:18 pilotlog.txt
[2025-12-03 01:18:37] -rw------- 1 mf493845 unix-user    481584 Dec  3 01:18 log.46965017._001593.job.log.1
[2025-12-03 01:18:37] -rw------- 1 mf493845 unix-user       357 Dec  3 01:18 output.list
[2025-12-03 01:18:37] -rw------- 1 mf493845 unix-user       620 Dec  3 01:18 runtime_log
[2025-12-03 01:18:37] -rw------- 1 mf493845 unix-user    819200 Dec  3 01:18 result.tar.gz
[2025-12-03 01:18:37] -rw------- 1 mf493845 unix-user      9220 Dec  3 01:18 runtime_log.err
[2025-12-03 01:18:37] -rw------- 1 mf493845 unix-user       642 Dec  3 01:18 oyHODmITuj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmKNMKDmKxgEln.diag
[2025-12-03 01:18:37] -rw------- 1 mf493845 unix-user     22957 Dec  3 01:18 stderr.txt
[2025-12-03 01:18:37] HITS file was successfully produced:
[2025-12-03 01:18:37] -rw------- 1 mf493845 unix-user 196465133 Dec  3 01:17 shared/HITS.pool.root.1
[2025-12-03 01:18:37]  *** Contents of shared directory: ***
[2025-12-03 01:18:37] total 460836
[2025-12-03 01:18:37] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 00:27 start_atlas.sh
[2025-12-03 01:18:37] -rw-r--r-- 2 mf493845 unix-user    589975 Dec  3 00:27 input.tar.gz
[2025-12-03 01:18:37] -rw-r--r-- 2 mf493845 unix-user 273993791 Dec  3 00:27 ATLAS.root_0
[2025-12-03 01:18:37] -rw------- 1 mf493845 unix-user 196465133 Dec  3 01:17 HITS.pool.root.1
[2025-12-03 01:18:37] -rw------- 1 mf493845 unix-user    819200 Dec  3 01:18 result.tar.gz
01:18:39 (5439): run_atlas exited; CPU time 21852.030684
01:18:39 (5439): called boinc_finish(0)

</stderr_txt>
]]>

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