Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
01:10:16 (18854): wrapper (7.7.26015): starting
01:10:16 (18854): wrapper: running run_atlas (--nthreads 8)
[2025-12-03 01:10:16] Arguments: --nthreads 8
[2025-12-03 01:10:16] Threads: 8
[2025-12-03 01:10:16] Checking for CVMFS
[2025-12-03 01:10:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 01:10:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 01:10:16] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 01:10:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 01:10:17] 2.11.0.0 4422 74675 118216 153574 3 188 3565648 4096001 2751 130560 1 9763683 99.678 5406059 526 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-03 01:10:17] CVMFS is ok
[2025-12-03 01:10:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-03 01:10:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-03 01:10:17] Further information can be found at the LHC@home message board.
[2025-12-03 01:10:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 01:10:17] Checking for apptainer binary...
[2025-12-03 01:10:17] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-03 01:10:17] apptainer is not installed, using version from CVMFS
[2025-12-03 01:10:17] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 01:10:17] WARNING: Environment variable TMPDIR already has value [/tmp/job_10946060/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node145
[2025-12-03 01:10:17] apptainer works
[2025-12-03 01:10:17] Set ATHENA_PROC_NUMBER=8
[2025-12-03 01:10:17] Set ATHENA_CORE_NUMBER=8
[2025-12-03 01:10:17] Starting ATLAS job with PandaID=6900275189
[2025-12-03 01:10:17] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10946060/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 04:47:10]  *** The last 200 lines of the pilot log: ***
[2025-12-03 04:47:10] 2025-12-03 03:46:37,301 | INFO     | using path: /tmp/job_10946060/atlas/pilot/slots/0/PanDA_Pilot-6900275189/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 04:47:10] 2025-12-03 03:46:37,302 | INFO     | extracted standard info from prmon json
[2025-12-03 04:47:10] 2025-12-03 03:46:37,302 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 04:47:10] 2025-12-03 03:46:37,302 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 04:47:10] 2025-12-03 03:46:37,304 | INFO     | fitting pss+swap vs Time
[2025-12-03 04:47:10] 2025-12-03 03:46:37,304 | INFO     | sum of square deviations: 2996454322.0
[2025-12-03 04:47:10] 2025-12-03 03:46:37,305 | INFO     | sum of deviations: 1267786822268.9998
[2025-12-03 04:47:10] 2025-12-03 03:46:37,305 | INFO     | mean x: 1764727121.0
[2025-12-03 04:47:10] 2025-12-03 03:46:37,305 | INFO     | mean y: 5204129.122065728
[2025-12-03 04:47:10] 2025-12-03 03:46:37,305 | INFO     | intersect: -746643183759.9393
[2025-12-03 04:47:10] 2025-12-03 03:46:37,305 | INFO     | chi2: 4.905089588194617
[2025-12-03 04:47:10] 2025-12-03 03:46:37,305 | INFO     | sum of square deviations: 2790348132.0
[2025-12-03 04:47:10] 2025-12-03 03:46:37,306 | INFO     | sum of deviations: 1337012954546.5
[2025-12-03 04:47:10] 2025-12-03 03:46:37,306 | INFO     | mean x: 1764726968.5
[2025-12-03 04:47:10] 2025-12-03 03:46:37,306 | INFO     | mean y: 5254539.6875
[2025-12-03 04:47:10] 2025-12-03 03:46:37,306 | INFO     | intersect: -845574833143.1039
[2025-12-03 04:47:10] 2025-12-03 03:46:37,306 | INFO     | chi2: 2.835250177636067
[2025-12-03 04:47:10] 2025-12-03 03:46:37,306 | INFO     | current chi2=2.835250177636067 (change=42.19779013904579 %)
[2025-12-03 04:47:10] 2025-12-03 03:46:37,306 | INFO     | sum of square deviations: 2593916542.0
[2025-12-03 04:47:10] 2025-12-03 03:46:37,307 | INFO     | sum of deviations: 1240590087315.0005
[2025-12-03 04:47:10] 2025-12-03 03:46:37,307 | INFO     | mean x: 1764726816.0
[2025-12-03 04:47:10] 2025-12-03 03:46:37,307 | INFO     | mean y: 5179676.561576354
[2025-12-03 04:47:10] 2025-12-03 03:46:37,307 | INFO     | intersect: -844009097305.7404
[2025-12-03 04:47:10] 2025-12-03 03:46:37,307 | INFO     | chi2: 2.822324249553137
[2025-12-03 04:47:10] 2025-12-03 03:46:37,307 | INFO     | current chi2=2.822324249553137 (change=0.45590079439505854 %)
[2025-12-03 04:47:10] 2025-12-03 03:46:37,307 | INFO     | right removable region: 202
[2025-12-03 04:47:10] 2025-12-03 03:46:37,307 | INFO     | sum of square deviations: 2790348132.0
[2025-12-03 04:47:10] 2025-12-03 03:46:37,308 | INFO     | sum of deviations: 1151484129244.0
[2025-12-03 04:47:10] 2025-12-03 03:46:37,308 | INFO     | mean x: 1764727273.5
[2025-12-03 04:47:10] 2025-12-03 03:46:37,308 | INFO     | mean y: 5289839.971153846
[2025-12-03 04:47:10] 2025-12-03 03:46:37,308 | INFO     | intersect: -728239126896.229
[2025-12-03 04:47:10] 2025-12-03 03:46:37,308 | INFO     | chi2: 3.2195140060311047
[2025-12-03 04:47:10] 2025-12-03 03:46:37,308 | INFO     | current chi2=3.2195140060311047 (change=34.36380828232559 %)
[2025-12-03 04:47:10] 2025-12-03 03:46:37,309 | INFO     | sum of square deviations: 2593916542.0
[2025-12-03 04:47:10] 2025-12-03 03:46:37,309 | INFO     | sum of deviations: 1081988418659.9998
[2025-12-03 04:47:10] 2025-12-03 03:46:37,309 | INFO     | mean x: 1764727426.0
[2025-12-03 04:47:10] 2025-12-03 03:46:37,309 | INFO     | mean y: 5343791.24137931
[2025-12-03 04:47:10] 2025-12-03 03:46:37,309 | INFO     | intersect: -736107251239.0701
[2025-12-03 04:47:10] 2025-12-03 03:46:37,309 | INFO     | chi2: 3.121254108624082
[2025-12-03 04:47:10] 2025-12-03 03:46:37,309 | INFO     | current chi2=3.121254108624082 (change=3.052010248222329 %)
[2025-12-03 04:47:10] 2025-12-03 03:46:37,310 | INFO     | left removable region: 20
[2025-12-03 04:47:10] 2025-12-03 03:46:37,310 | INFO     | sum of square deviations: 1869302025.5
[2025-12-03 04:47:10] 2025-12-03 03:46:37,310 | INFO     | sum of deviations: 924841960240.5001
[2025-12-03 04:47:10] 2025-12-03 03:46:37,310 | INFO     | mean x: 1764727395.5
[2025-12-03 04:47:10] 2025-12-03 03:46:37,310 | INFO     | mean y: 5425519.82967033
[2025-12-03 04:47:10] 2025-12-03 03:46:37,310 | INFO     | intersect: -873097968945.1608
[2025-12-03 04:47:10] 2025-12-03 03:46:37,310 | INFO     | chi2: 0.4467700644952013
[2025-12-03 04:47:10] 2025-12-03 03:46:37,311 | INFO     | current memory leak: 494.75 B/s (using 182 data points, chi2=0.45)
[2025-12-03 04:47:10] 2025-12-03 03:46:37,311 | INFO     | could have reported an average CPU frequency of 2881 MHz (11 samples)
[2025-12-03 04:47:10] 2025-12-03 03:46:37,311 | INFO     | ..............................
[2025-12-03 04:47:10] 2025-12-03 03:46:37,311 | INFO     | . Timing measurements:
[2025-12-03 04:47:10] 2025-12-03 03:46:37,311 | INFO     | . get job = 0 s
[2025-12-03 04:47:10] 2025-12-03 03:46:37,311 | INFO     | . initial setup = 1 s
[2025-12-03 04:47:10] 2025-12-03 03:46:37,311 | INFO     | . payload setup = 18 s
[2025-12-03 04:47:10] 2025-12-03 03:46:37,311 | INFO     | . stage-in = 0 s
[2025-12-03 04:47:10] 2025-12-03 03:46:37,311 | INFO     | . payload execution = 12935 s
[2025-12-03 04:47:10] 2025-12-03 03:46:37,311 | INFO     | . stage-out = 1 s
[2025-12-03 04:47:10] 2025-12-03 03:46:37,311 | INFO     | . log creation = 0 s
[2025-12-03 04:47:10] 2025-12-03 03:46:37,311 | INFO     | ..............................
[2025-12-03 04:47:10] 2025-12-03 03:46:37,360 | INFO     | 
[2025-12-03 04:47:10] 2025-12-03 03:46:37,360 | INFO     | job summary report
[2025-12-03 04:47:10] 2025-12-03 03:46:37,360 | INFO     | --------------------------------------------------
[2025-12-03 04:47:10] 2025-12-03 03:46:37,360 | INFO     | PanDA job id: 6900275189
[2025-12-03 04:47:10] 2025-12-03 03:46:37,360 | INFO     | task id: 47530783
[2025-12-03 04:47:10] 2025-12-03 03:46:37,360 | INFO     | errors: (none)
[2025-12-03 04:47:10] 2025-12-03 03:46:37,360 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 04:47:10] 2025-12-03 03:46:37,360 | INFO     | pilot state: finished 
[2025-12-03 04:47:10] 2025-12-03 03:46:37,360 | INFO     | transexitcode: 0
[2025-12-03 04:47:10] 2025-12-03 03:46:37,360 | INFO     | exeerrorcode: 0
[2025-12-03 04:47:10] 2025-12-03 03:46:37,360 | INFO     | exeerrordiag: 
[2025-12-03 04:47:10] 2025-12-03 03:46:37,360 | INFO     | exitcode: 0
[2025-12-03 04:47:10] 2025-12-03 03:46:37,360 | INFO     | exitmsg: OK
[2025-12-03 04:47:10] 2025-12-03 03:46:37,360 | INFO     | cpuconsumptiontime: 97663 s
[2025-12-03 04:47:10] 2025-12-03 03:46:37,361 | INFO     | nevents: 1000
[2025-12-03 04:47:10] 2025-12-03 03:46:37,361 | INFO     | neventsw: 0
[2025-12-03 04:47:10] 2025-12-03 03:46:37,361 | INFO     | pid: 32645
[2025-12-03 04:47:10] 2025-12-03 03:46:37,361 | INFO     | pgrp: 32645
[2025-12-03 04:47:10] 2025-12-03 03:46:37,361 | INFO     | corecount: 8
[2025-12-03 04:47:10] 2025-12-03 03:46:37,361 | INFO     | event service: False
[2025-12-03 04:47:10] 2025-12-03 03:46:37,361 | INFO     | sizes: {0: 2284575, 2: 2284837, 11: 2284865, 12958: 2335237, 12959: 2344317, 12963: 2344507}
[2025-12-03 04:47:10] 2025-12-03 03:46:37,361 | INFO     | --------------------------------------------------
[2025-12-03 04:47:10] 2025-12-03 03:46:37,361 | INFO     | 
[2025-12-03 04:47:10] 2025-12-03 03:46:37,361 | INFO     | executing command: ls -lF /tmp/job_10946060/atlas/pilot/slots/0
[2025-12-03 04:47:10] 2025-12-03 03:46:37,369 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 04:47:10] 2025-12-03 03:46:37,369 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 04:47:10] 2025-12-03 03:46:37,369 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 04:47:10] 2025-12-03 03:46:37,369 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 04:47:10] 2025-12-03 03:46:37,369 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 04:47:10] 2025-12-03 03:46:37,369 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 04:47:10] 2025-12-03 03:46:37,369 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 04:47:10] 2025-12-03 03:46:37,369 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 04:47:10] 2025-12-03 03:46:37,369 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 04:47:10] 2025-12-03 03:46:37,369 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 04:47:10] 2025-12-03 03:46:37,369 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 04:47:10] 2025-12-03 03:46:37,369 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 04:47:10] 2025-12-03 03:46:37,369 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 04:47:10] 2025-12-03 03:46:37,369 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 04:47:10] 2025-12-03 03:46:37,369 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 04:47:10] 2025-12-03 03:46:37,370 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 04:47:10] 2025-12-03 03:46:37,370 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 04:47:10] 2025-12-03 03:46:37,370 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 04:47:10] 2025-12-03 03:46:37,370 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 04:47:10] 2025-12-03 03:46:37,370 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 04:47:10] 2025-12-03 03:46:37,370 | INFO     | job 6900275189 has completed (purged errors)
[2025-12-03 04:47:10] 2025-12-03 03:46:37,370 | INFO     | overall cleanup function is called
[2025-12-03 04:47:10] 2025-12-03 03:46:37,949 | WARNING  | process 32645 can no longer be monitored (due to stat problems) - aborting
[2025-12-03 04:47:10] 2025-12-03 03:46:38,033 | INFO     | using path: /tmp/job_10946060/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 04:47:10] 2025-12-03 03:46:38,134 | INFO     | number of running child processes to parent process 32645: 1
[2025-12-03 04:47:10] 2025-12-03 03:46:38,134 | INFO     | maximum number of monitored processes: 16
[2025-12-03 04:47:10] 2025-12-03 03:46:38,134 | INFO     | aborting job monitoring since job object (job id=6900275189) has expired
[2025-12-03 04:47:10] 2025-12-03 03:46:38,377 | INFO     | --- collectZombieJob: --- 10, [32645]
[2025-12-03 04:47:10] 2025-12-03 03:46:38,377 | INFO     | zombie collector waiting for pid 32645
[2025-12-03 04:47:10] 2025-12-03 03:46:38,377 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 04:47:10] 2025-12-03 03:46:38,377 | INFO     | collected zombie processes
[2025-12-03 04:47:10] 2025-12-03 03:46:38,377 | INFO     | will attempt to kill all subprocesses of pid=32645
[2025-12-03 04:47:10] 2025-12-03 03:46:38,478 | INFO     | process IDs to be killed: [32645] (in reverse order)
[2025-12-03 04:47:10] 2025-12-03 03:46:38,513 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 04:47:10] 2025-12-03 03:46:38,513 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 04:47:10] 2025-12-03 03:46:38,517 | INFO     | did not find any defunct processes belonging to 32645
[2025-12-03 04:47:10] 2025-12-03 03:46:38,521 | INFO     | did not find any defunct processes belonging to 32645
[2025-12-03 04:47:10] 2025-12-03 03:46:38,521 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 04:47:10] 2025-12-03 03:46:38,521 | INFO     | ready for new job
[2025-12-03 04:47:10] 2025-12-03 03:46:38,521 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 04:47:10] 2025-12-03 03:46:38,522 | INFO     | ***************************************
[2025-12-03 04:47:10] 2025-12-03 03:46:38,522 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 04:47:10] 2025-12-03 03:46:38,522 | INFO     | ***************************************
[2025-12-03 04:47:10] 2025-12-03 03:46:38,522 | INFO     | 
[2025-12-03 04:47:10] 2025-12-03 03:46:38,535 | INFO     | architecture information:
[2025-12-03 04:47:10] 2025-12-03 03:46:38,536 | INFO     | executing command: cat /etc/os-release
[2025-12-03 04:47:10] 2025-12-03 03:46:38,542 | INFO     | cat /etc/os-release:
[2025-12-03 04:47:10] NAME="CentOS Linux"
[2025-12-03 04:47:10] VERSION="7 (Core)"
[2025-12-03 04:47:10] ID="centos"
[2025-12-03 04:47:10] ID_LIKE="rhel fedora"
[2025-12-03 04:47:10] VERSION_ID="7"
[2025-12-03 04:47:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 04:47:10] ANSI_COLOR="0;31"
[2025-12-03 04:47:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 04:47:10] HOME_URL="https://www.centos.org/"
[2025-12-03 04:47:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 04:47:10] 
[2025-12-03 04:47:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 04:47:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 04:47:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 04:47:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 04:47:10] 
[2025-12-03 04:47:10] 2025-12-03 03:46:38,542 | INFO     | ***************************************
[2025-12-03 04:47:10] 2025-12-03 03:46:39,044 | INFO     | executing command: df -mP /tmp/job_10946060/atlas/pilot/slots/0
[2025-12-03 04:47:10] 2025-12-03 03:46:39,051 | INFO     | sufficient remaining disk space (218710933504 B)
[2025-12-03 04:47:10] 2025-12-03 03:46:39,051 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 04:47:10] 2025-12-03 03:46:39,051 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 04:47:10] 2025-12-03 03:46:39,051 | INFO     | update_server=False
[2025-12-03 04:47:10] 2025-12-03 03:46:39,051 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 04:47:10] 2025-12-03 03:46:39,051 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 04:47:10] 2025-12-03 03:46:39,051 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 04:47:10] 2025-12-03 03:46:39,051 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 04:47:10] 2025-12-03 03:46:39,051 | INFO     | will abort loop
[2025-12-03 04:47:10] 2025-12-03 03:46:39,278 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 04:47:10] 2025-12-03 03:46:39,297 | INFO     | all payload control threads have been joined
[2025-12-03 04:47:10] 2025-12-03 03:46:40,056 | INFO     | [job] retrieve thread has finished
[2025-12-03 04:47:10] 2025-12-03 03:46:40,057 | INFO     | [job] queue monitor thread has finished
[2025-12-03 04:47:10] 2025-12-03 03:46:40,057 | INFO     | [job] job monitor thread has finished
[2025-12-03 04:47:10] 2025-12-03 03:46:40,065 | INFO     | all data control threads have been joined
[2025-12-03 04:47:10] 2025-12-03 03:46:40,303 | INFO     | [payload] control thread has finished
[2025-12-03 04:47:10] 2025-12-03 03:46:40,329 | INFO     | all job control threads have been joined
[2025-12-03 04:47:10] 2025-12-03 03:46:40,645 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 04:47:10] 2025-12-03 03:46:40,684 | INFO     | [job] validate thread has finished
[2025-12-03 04:47:10] 2025-12-03 03:46:40,861 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 04:47:10] 2025-12-03 03:46:40,939 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 04:47:10] 2025-12-03 03:46:41,056 | INFO     | [data] copytool_out thread has finished
[2025-12-03 04:47:10] 2025-12-03 03:46:41,070 | INFO     | [data] control thread has finished
[2025-12-03 04:47:10] 2025-12-03 03:46:41,192 | INFO     | [payload] validate_post thread has finished
[2025-12-03 04:47:10] 2025-12-03 03:46:41,252 | INFO     | [data] copytool_in thread has finished
[2025-12-03 04:47:10] 2025-12-03 03:46:41,300 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 04:47:10] 2025-12-03 03:46:41,334 | INFO     | [job] control thread has finished
[2025-12-03 04:47:10] 2025-12-03 03:46:41,599 | INFO     | [payload] failed_post thread has finished
[2025-12-03 04:47:10] 2025-12-03 03:46:43,019 | INFO     | [monitor] cgroup control has ended
[2025-12-03 04:47:10] 2025-12-03 03:46:43,284 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 04:47:10] 2025-12-03 03:46:43,543 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456067122944)>']
[2025-12-03 04:47:10] 2025-12-03 03:46:48,568 | INFO     | all workflow threads have been joined
[2025-12-03 04:47:10] 2025-12-03 03:46:48,568 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 04:47:10] 2025-12-03 03:46:48,568 | INFO     | traces error code: 0
[2025-12-03 04:47:10] 2025-12-03 03:46:48,568 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 04:47:10] 2025-12-03 03:47:09,822 | INFO     | PID=23543 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-03 04:47:10] 2025-12-03 03:47:09,822 | INFO     | .. there are 5 such processes running
[2025-12-03 04:47:10] 2025-12-03 03:47:09,822 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 04:47:10] 2025-12-03 03:47:09,822 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 04:47:10] 2025-12-03 03:47:09,822 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 04:47:10] 2025-12-03 03:47:09,822 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 04:47:10] 2025-12-03 03:47:09,822 | INFO     | [monitor] control thread has ended
[2025-12-03 04:47:10] 2025-12-03 03:47:09,873 [wrapper] ==== pilot stdout END ====
[2025-12-03 04:47:10] 2025-12-03 03:47:09,874 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 04:47:10] 2025-12-03 03:47:09,875 [wrapper] pilotpid: 23543
[2025-12-03 04:47:10] 2025-12-03 03:47:09,876 [wrapper] Pilot exit status: 0
[2025-12-03 04:47:10] 2025-12-03 03:47:09,880 [wrapper] pandaids: 6900275189
[2025-12-03 04:47:10] 2025-12-03 03:47:09,903 [wrapper] cleanup supervisor_pilot  9870 23544
[2025-12-03 04:47:10] 2025-12-03 03:47:09,904 [wrapper] Test setup, not cleaning
[2025-12-03 04:47:10] 2025-12-03 03:47:09,905 [wrapper] apfmon messages muted
[2025-12-03 04:47:10] 2025-12-03 03:47:09,907 [wrapper] ==== wrapper stdout END ====
[2025-12-03 04:47:10] 2025-12-03 03:47:09,908 [wrapper] ==== wrapper stderr END ====
[2025-12-03 04:47:10]  *** Error codes and diagnostics ***
[2025-12-03 04:47:10]     "exeErrorCode": 0,
[2025-12-03 04:47:10]     "exeErrorDiag": "",
[2025-12-03 04:47:10]     "pilotErrorCode": 0,
[2025-12-03 04:47:10]     "pilotErrorDiag": "",
[2025-12-03 04:47:10]  *** Listing of results directory ***
[2025-12-03 04:47:10] total 1049180
[2025-12-03 04:47:10] -rw------- 1 mf493845 unix-user    576529 Nov 28 23:41 pilot3.tar.gz
[2025-12-03 04:47:10] -rwx------ 1 mf493845 unix-user     36292 Nov 28 23:46 runpilot2-wrapper.sh
[2025-12-03 04:47:10] -rw------- 1 mf493845 unix-user      5112 Nov 28 23:49 queuedata.json
[2025-12-03 04:47:10] -rw------- 1 mf493845 unix-user       100 Dec  2 23:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 04:47:10] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  2 23:35 run_atlas
[2025-12-03 04:47:10] -rw------- 1 mf493845 unix-user       105 Dec  2 23:35 job.xml
[2025-12-03 04:47:10] -rw-r--r-- 2 mf493845 unix-user 374006072 Dec  3 01:10 EVNT.47530775._000052.pool.root.1
[2025-12-03 04:47:10] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 01:10 start_atlas.sh
[2025-12-03 04:47:10] drwxrwx--x 2 mf493845 unix-user       100 Dec  3 01:10 shared
[2025-12-03 04:47:10] -rw-r--r-- 2 mf493845 unix-user    590116 Dec  3 01:10 input.tar.gz
[2025-12-03 04:47:10] -rw------- 1 mf493845 unix-user      6391 Dec  3 01:10 init_data.xml
[2025-12-03 04:47:10] -rw------- 1 mf493845 unix-user         0 Dec  3 01:10 boinc_setup_complete
[2025-12-03 04:47:10] -rw------- 1 mf493845 unix-user      8192 Dec  3 01:10 boinc_mmap_file
[2025-12-03 04:47:10] -rw------- 1 mf493845 unix-user         0 Dec  3 01:10 boinc_lockfile
[2025-12-03 04:47:10] -rw------- 1 mf493845 unix-user      2878 Dec  3 01:10 pandaJob.out
[2025-12-03 04:47:10] -rw------- 1 mf493845 unix-user    989284 Dec  3 01:10 agis_schedconf.cvmfs.json
[2025-12-03 04:47:10] drwx------ 5 mf493845 unix-user       440 Dec  3 01:10 pilot3
[2025-12-03 04:47:10] -rw------- 1 mf493845 unix-user 689460691 Dec  3 04:46 HITS.47530783._000514.pool.root.1
[2025-12-03 04:47:10] -rw------- 1 mf493845 unix-user        95 Dec  3 04:46 pilot_heartbeat.json
[2025-12-03 04:47:10] -rw------- 1 mf493845 unix-user      1025 Dec  3 04:46 memory_monitor_summary.json
[2025-12-03 04:47:10] -rw------- 1 mf493845 unix-user   1516240 Dec  3 04:46 agis_ddmendpoints.agis.ALL.json
[2025-12-03 04:47:10] -rw------- 1 mf493845 unix-user   1607473 Dec  3 04:46 log.47530783._000514.job.log.tgz.1
[2025-12-03 04:47:10] -rw------- 1 mf493845 unix-user     28062 Dec  3 04:46 heartbeat.json
[2025-12-03 04:47:10] -rw------- 1 mf493845 unix-user       820 Dec  3 04:47 pilotlog.txt
[2025-12-03 04:47:10] -rw------- 1 mf493845 unix-user   1880172 Dec  3 04:47 log.47530783._000514.job.log.1
[2025-12-03 04:47:10] -rw------- 1 mf493845 unix-user       353 Dec  3 04:47 output.list
[2025-12-03 04:47:10] -rw------- 1 mf493845 unix-user       620 Dec  3 04:47 runtime_log
[2025-12-03 04:47:10] -rw------- 1 mf493845 unix-user   3522560 Dec  3 04:47 result.tar.gz
[2025-12-03 04:47:10] -rw------- 1 mf493845 unix-user      9221 Dec  3 04:47 runtime_log.err
[2025-12-03 04:47:10] -rw------- 1 mf493845 unix-user       650 Dec  3 04:47 fxoLDmPPMj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmEbLKDmA4Rnwn.diag
[2025-12-03 04:47:10] -rw------- 1 mf493845 unix-user     21717 Dec  3 04:47 stderr.txt
[2025-12-03 04:47:10] HITS file was successfully produced:
[2025-12-03 04:47:10] -rw------- 1 mf493845 unix-user 689460691 Dec  3 04:46 shared/HITS.pool.root.1
[2025-12-03 04:47:10]  *** Contents of shared directory: ***
[2025-12-03 04:47:10] total 1042584
[2025-12-03 04:47:10] -rw-r--r-- 2 mf493845 unix-user 374006072 Dec  3 01:10 ATLAS.root_0
[2025-12-03 04:47:10] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 01:10 start_atlas.sh
[2025-12-03 04:47:10] -rw-r--r-- 2 mf493845 unix-user    590116 Dec  3 01:10 input.tar.gz
[2025-12-03 04:47:10] -rw------- 1 mf493845 unix-user 689460691 Dec  3 04:46 HITS.pool.root.1
[2025-12-03 04:47:10] -rw------- 1 mf493845 unix-user   3522560 Dec  3 04:47 result.tar.gz
04:47:11 (18854): run_atlas exited; CPU time 97795.810406
04:47:11 (18854): called boinc_finish(0)

</stderr_txt>
]]>

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