Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:09:00 (425805): wrapper (7.7.26015): starting
17:09:00 (425805): wrapper: running run_atlas (--nthreads 10)
[2025-12-02 17:09:00] Arguments: --nthreads 10
[2025-12-02 17:09:00] Threads: 10
[2025-12-02 17:09:00] Checking for CVMFS
[2025-12-02 17:09:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 17:09:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 17:09:01] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 17:09:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 17:09:02] 2.13.2.0 1657905 39479 247824 153569 0 910 38906184 40960001 38076 16776704 0 456796754 99.692 362892084 48421 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-02 17:09:02] CVMFS is ok
[2025-12-02 17:09:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 17:09:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 17:09:02] Further information can be found at the LHC@home message board.
[2025-12-02 17:09:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 17:09:02] Checking for apptainer binary...
[2025-12-02 17:09:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 17:09:02] Running /usr/bin/apptainer --version
[2025-12-02 17:09:02] apptainer version 1.4.4-1.el9
[2025-12-02 17:09:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 17:09:02] c-208-39.aglt2.org
[2025-12-02 17:09:02] apptainer works
[2025-12-02 17:09:02] Set ATHENA_PROC_NUMBER=10
[2025-12-02 17:09:02] Set ATHENA_CORE_NUMBER=10
[2025-12-02 17:09:02] Starting ATLAS job with PandaID=6895351386
[2025-12-02 17:09:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
23:00:05 (425805): BOINC client no longer exists - exiting
23:00:05 (425805): timer handler: client dead, exiting
23:11:05 (3253974): wrapper (7.7.26015): starting
23:11:05 (3253974): wrapper: running run_atlas (--nthreads 11)
[2025-12-02 23:11:05] Arguments: --nthreads 11
[2025-12-02 23:11:05] Threads: 11
[2025-12-02 23:11:05] This job has been restarted, cleaning up previous attempt
[2025-12-02 23:11:05] Checking for CVMFS
[2025-12-02 23:11:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 23:11:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 23:11:05] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 23:11:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 23:11:05] 2.13.2.0 1657905 39841 245256 153579 3 546 24319821 40960000 23221 16776704 0 459625104 99.692 364147989 48429 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-02 23:11:05] CVMFS is ok
[2025-12-02 23:11:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 23:11:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 23:11:05] Further information can be found at the LHC@home message board.
[2025-12-02 23:11:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 23:11:05] Checking for apptainer binary...
[2025-12-02 23:11:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 23:11:05] Running /usr/bin/apptainer --version
[2025-12-02 23:11:05] apptainer version 1.4.4-1.el9
[2025-12-02 23:11:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 23:11:05] c-208-39.aglt2.org
[2025-12-02 23:11:05] apptainer works
[2025-12-02 23:11:05] Set ATHENA_PROC_NUMBER=11
[2025-12-02 23:11:05] Set ATHENA_CORE_NUMBER=11
[2025-12-02 23:11:05] Starting ATLAS job with PandaID=6895351386
[2025-12-02 23:11:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 09:20:26]  *** The last 200 lines of the pilot log: ***
[2025-12-03 09:20:27] 2025-12-03 14:19:16,377 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 09:20:27] 2025-12-03 14:19:16,511 | INFO     | time since job start (36481s) is within the limit (172800.0s)
[2025-12-03 09:20:27] 2025-12-03 14:19:17,422 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-03 09:20:27] 2025-12-03 14:19:17,439 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3782.411820312501
[2025-12-03 09:20:27] 2025-12-03 14:19:17,482 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6895351386/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 09:20:27] 2025-12-03 14:19:17,483 | INFO     | extracted standard info from prmon json
[2025-12-03 09:20:27] 2025-12-03 14:19:17,483 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 09:20:27] 2025-12-03 14:19:17,483 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 09:20:27] 2025-12-03 14:19:17,488 | INFO     | fitting pss+swap vs Time
[2025-12-03 09:20:27] 2025-12-03 14:19:17,489 | INFO     | sum of square deviations: 66304888683.29779
[2025-12-03 09:20:27] 2025-12-03 14:19:17,494 | INFO     | sum of deviations: 522376162717.7342
[2025-12-03 09:20:27] 2025-12-03 14:19:17,494 | INFO     | mean x: 1764753312.5183947
[2025-12-03 09:20:27] 2025-12-03 14:19:17,494 | INFO     | mean y: 3332647.8879598663
[2025-12-03 09:20:27] 2025-12-03 14:19:17,494 | INFO     | intersect: -13900092602.398106
[2025-12-03 09:20:27] 2025-12-03 14:19:17,494 | INFO     | chi2: 7.584327206011131
[2025-12-03 09:20:27] 2025-12-03 14:19:17,495 | INFO     | sum of square deviations: 64656003584.85998
[2025-12-03 09:20:27] 2025-12-03 14:19:17,499 | INFO     | sum of deviations: 770665440399.5719
[2025-12-03 09:20:27] 2025-12-03 14:19:17,500 | INFO     | mean x: 1764753160.043845
[2025-12-03 09:20:27] 2025-12-03 14:19:17,500 | INFO     | mean y: 3355607.1703204047
[2025-12-03 09:20:27] 2025-12-03 14:19:17,500 | INFO     | intersect: -21031570708.63116
[2025-12-03 09:20:27] 2025-12-03 14:19:17,500 | INFO     | chi2: 3.9360540216197526
[2025-12-03 09:20:27] 2025-12-03 14:19:17,500 | INFO     | current chi2=3.9360540216197526 (change=48.10279257861998 %)
[2025-12-03 09:20:27] 2025-12-03 14:19:17,501 | INFO     | sum of square deviations: 63034700398.14115
[2025-12-03 09:20:27] 2025-12-03 14:19:17,505 | INFO     | sum of deviations: 952447578828.1469
[2025-12-03 09:20:27] 2025-12-03 14:19:17,505 | INFO     | mean x: 1764753007.569728
[2025-12-03 09:20:27] 2025-12-03 14:19:17,506 | INFO     | mean y: 3372679.2891156464
[2025-12-03 09:20:27] 2025-12-03 14:19:17,506 | INFO     | intersect: -26661856451.220787
[2025-12-03 09:20:27] 2025-12-03 14:19:17,506 | INFO     | chi2: 1.7559374301966408
[2025-12-03 09:20:27] 2025-12-03 14:19:17,506 | INFO     | current chi2=1.7559374301966408 (change=55.38838083644892 %)
[2025-12-03 09:20:27] 2025-12-03 14:19:17,506 | INFO     | sum of square deviations: 61440639338.181404
[2025-12-03 09:20:27] 2025-12-03 14:19:17,511 | INFO     | sum of deviations: 962549685771.0891
[2025-12-03 09:20:27] 2025-12-03 14:19:17,511 | INFO     | mean x: 1764752855.090909
[2025-12-03 09:20:27] 2025-12-03 14:19:17,511 | INFO     | mean y: 3373630.753001715
[2025-12-03 09:20:27] 2025-12-03 14:19:17,511 | INFO     | intersect: -27643837147.468464
[2025-12-03 09:20:27] 2025-12-03 14:19:17,511 | INFO     | chi2: 1.6393343775114546
[2025-12-03 09:20:27] 2025-12-03 14:19:17,511 | INFO     | current chi2=1.6393343775114546 (change=6.640501573688094 %)
[2025-12-03 09:20:27] 2025-12-03 14:19:17,511 | INFO     | right removable region: 582
[2025-12-03 09:20:27] 2025-12-03 14:19:17,512 | INFO     | sum of square deviations: 64655011618.107544
[2025-12-03 09:20:27] 2025-12-03 14:19:17,516 | INFO     | sum of deviations: 380867155792.676
[2025-12-03 09:20:27] 2025-12-03 14:19:17,516 | INFO     | mean x: 1764753465.038786
[2025-12-03 09:20:27] 2025-12-03 14:19:17,516 | INFO     | mean y: 3345691.8836424956
[2025-12-03 09:20:27] 2025-12-03 14:19:17,516 | INFO     | intersect: -10392393417.63267
[2025-12-03 09:20:27] 2025-12-03 14:19:17,517 | INFO     | chi2: 6.130003690049062
[2025-12-03 09:20:27] 2025-12-03 14:19:17,517 | INFO     | current chi2=6.130003690049062 (change=19.17537939040146 %)
[2025-12-03 09:20:27] 2025-12-03 14:19:17,517 | INFO     | left removable region: 10
[2025-12-03 09:20:27] 2025-12-03 14:19:17,517 | INFO     | sum of square deviations: 58027393306.67643
[2025-12-03 09:20:27] 2025-12-03 14:19:17,521 | INFO     | sum of deviations: 770026463853.8411
[2025-12-03 09:20:27] 2025-12-03 14:19:17,521 | INFO     | mean x: 1764753129.6206293
[2025-12-03 09:20:27] 2025-12-03 14:19:17,521 | INFO     | mean y: 3391727.3863636362
[2025-12-03 09:20:27] 2025-12-03 14:19:17,522 | INFO     | intersect: -23414972161.45683
[2025-12-03 09:20:27] 2025-12-03 14:19:17,522 | INFO     | chi2: 0.09909878170146615
[2025-12-03 09:20:27] 2025-12-03 14:19:17,522 | INFO     | current memory leak: 13.27 B/s (using 572 data points, chi2=0.10)
[2025-12-03 09:20:27] 2025-12-03 14:19:17,523 | INFO     | could have reported an average CPU frequency of 3762 MHz (23 samples)
[2025-12-03 09:20:27] 2025-12-03 14:19:17,523 | INFO     | ..............................
[2025-12-03 09:20:27] 2025-12-03 14:19:17,523 | INFO     | . Timing measurements:
[2025-12-03 09:20:27] 2025-12-03 14:19:17,523 | INFO     | . get job = 0 s
[2025-12-03 09:20:27] 2025-12-03 14:19:17,523 | INFO     | . initial setup = 0 s
[2025-12-03 09:20:27] 2025-12-03 14:19:17,523 | INFO     | . payload setup = 6 s
[2025-12-03 09:20:27] 2025-12-03 14:19:17,523 | INFO     | . stage-in = 0 s
[2025-12-03 09:20:27] 2025-12-03 14:19:17,523 | INFO     | . payload execution = 36432 s
[2025-12-03 09:20:27] 2025-12-03 14:19:17,523 | INFO     | . stage-out = 4 s
[2025-12-03 09:20:27] 2025-12-03 14:19:17,523 | INFO     | . log creation = 0 s
[2025-12-03 09:20:27] 2025-12-03 14:19:17,523 | INFO     | ..............................
[2025-12-03 09:20:27] 2025-12-03 14:19:17,798 | INFO     | 
[2025-12-03 09:20:27] 2025-12-03 14:19:17,802 | INFO     | job summary report
[2025-12-03 09:20:27] 2025-12-03 14:19:17,802 | INFO     | --------------------------------------------------
[2025-12-03 09:20:27] 2025-12-03 14:19:17,802 | INFO     | PanDA job id: 6895351386
[2025-12-03 09:20:27] 2025-12-03 14:19:17,802 | INFO     | task id: 47556137
[2025-12-03 09:20:27] 2025-12-03 14:19:17,802 | INFO     | errors: (none)
[2025-12-03 09:20:27] 2025-12-03 14:19:17,802 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 09:20:27] 2025-12-03 14:19:17,802 | INFO     | pilot state: finished 
[2025-12-03 09:20:27] 2025-12-03 14:19:17,802 | INFO     | transexitcode: 0
[2025-12-03 09:20:27] 2025-12-03 14:19:17,802 | INFO     | exeerrorcode: 0
[2025-12-03 09:20:27] 2025-12-03 14:19:17,802 | INFO     | exeerrordiag: 
[2025-12-03 09:20:27] 2025-12-03 14:19:17,802 | INFO     | exitcode: 0
[2025-12-03 09:20:27] 2025-12-03 14:19:17,802 | INFO     | exitmsg: OK
[2025-12-03 09:20:27] 2025-12-03 14:19:17,802 | INFO     | cpuconsumptiontime: 139542 s
[2025-12-03 09:20:27] 2025-12-03 14:19:17,802 | INFO     | nevents: 1000
[2025-12-03 09:20:27] 2025-12-03 14:19:17,802 | INFO     | neventsw: 0
[2025-12-03 09:20:27] 2025-12-03 14:19:17,802 | INFO     | pid: 3322561
[2025-12-03 09:20:27] 2025-12-03 14:19:17,802 | INFO     | pgrp: 3322561
[2025-12-03 09:20:27] 2025-12-03 14:19:17,802 | INFO     | corecount: 11
[2025-12-03 09:20:27] 2025-12-03 14:19:17,802 | INFO     | event service: False
[2025-12-03 09:20:27] 2025-12-03 14:19:17,803 | INFO     | sizes: {0: 2284213, 4: 2284475, 10: 2284503, 36439: 2326304, 36444: 2335298, 36447: 2335354, 36467: 2335728}
[2025-12-03 09:20:27] 2025-12-03 14:19:17,803 | INFO     | --------------------------------------------------
[2025-12-03 09:20:27] 2025-12-03 14:19:17,803 | INFO     | 
[2025-12-03 09:20:27] 2025-12-03 14:19:17,803 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-12-03 09:20:27] 2025-12-03 14:19:17,875 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 09:20:27] 2025-12-03 14:19:17,875 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 09:20:27] 2025-12-03 14:19:17,875 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 09:20:27] 2025-12-03 14:19:17,875 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 09:20:27] 2025-12-03 14:19:17,875 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 09:20:27] 2025-12-03 14:19:17,875 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 09:20:27] 2025-12-03 14:19:17,875 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 09:20:27] 2025-12-03 14:19:17,875 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 09:20:27] 2025-12-03 14:19:17,876 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 09:20:27] 2025-12-03 14:19:17,876 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 09:20:27] 2025-12-03 14:19:17,876 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 09:20:27] 2025-12-03 14:19:17,876 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 09:20:27] 2025-12-03 14:19:17,876 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 09:20:27] 2025-12-03 14:19:17,876 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 09:20:27] 2025-12-03 14:19:17,876 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 09:20:27] 2025-12-03 14:19:17,876 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 09:20:27] 2025-12-03 14:19:17,876 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 09:20:27] 2025-12-03 14:19:17,876 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 09:20:27] 2025-12-03 14:19:17,876 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 09:20:27] 2025-12-03 14:19:17,876 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 09:20:27] 2025-12-03 14:19:17,876 | INFO     | job 6895351386 has completed (purged errors)
[2025-12-03 09:20:27] 2025-12-03 14:19:17,876 | INFO     | overall cleanup function is called
[2025-12-03 09:20:27] 2025-12-03 14:19:18,892 | INFO     | --- collectZombieJob: --- 10, [3322561]
[2025-12-03 09:20:27] 2025-12-03 14:19:18,892 | INFO     | zombie collector waiting for pid 3322561
[2025-12-03 09:20:27] 2025-12-03 14:19:18,893 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 09:20:27] 2025-12-03 14:19:18,893 | INFO     | collected zombie processes
[2025-12-03 09:20:27] 2025-12-03 14:19:18,893 | INFO     | will attempt to kill all subprocesses of pid=3322561
[2025-12-03 09:20:27] 2025-12-03 14:19:19,485 | INFO     | process IDs to be killed: [3322561] (in reverse order)
[2025-12-03 09:20:27] 2025-12-03 14:19:19,757 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 09:20:27] 2025-12-03 14:19:19,758 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 09:20:27] 2025-12-03 14:19:19,781 | INFO     | did not find any defunct processes belonging to 3322561
[2025-12-03 09:20:27] 2025-12-03 14:19:19,826 | INFO     | did not find any defunct processes belonging to 3322561
[2025-12-03 09:20:27] 2025-12-03 14:19:19,827 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 09:20:27] 2025-12-03 14:19:19,827 | INFO     | ready for new job
[2025-12-03 09:20:27] 2025-12-03 14:19:19,827 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 09:20:27] 2025-12-03 14:19:19,831 | INFO     | ***************************************
[2025-12-03 09:20:27] 2025-12-03 14:19:19,831 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 09:20:27] 2025-12-03 14:19:19,831 | INFO     | ***************************************
[2025-12-03 09:20:27] 2025-12-03 14:19:19,832 | INFO     | 
[2025-12-03 09:20:27] 2025-12-03 14:19:19,858 | INFO     | architecture information:
[2025-12-03 09:20:27] 2025-12-03 14:19:19,875 | INFO     | executing command: cat /etc/os-release
[2025-12-03 09:20:27] 2025-12-03 14:19:19,935 | INFO     | cat /etc/os-release:
[2025-12-03 09:20:27] NAME="CentOS Linux"
[2025-12-03 09:20:27] VERSION="7 (Core)"
[2025-12-03 09:20:27] ID="centos"
[2025-12-03 09:20:27] ID_LIKE="rhel fedora"
[2025-12-03 09:20:27] VERSION_ID="7"
[2025-12-03 09:20:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 09:20:27] ANSI_COLOR="0;31"
[2025-12-03 09:20:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 09:20:27] HOME_URL="https://www.centos.org/"
[2025-12-03 09:20:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 09:20:27] 
[2025-12-03 09:20:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 09:20:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 09:20:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 09:20:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 09:20:27] 
[2025-12-03 09:20:27] 2025-12-03 14:19:19,935 | INFO     | ***************************************
[2025-12-03 09:20:27] 2025-12-03 14:19:20,439 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-12-03 09:20:27] 2025-12-03 14:19:20,472 | INFO     | sufficient remaining disk space (169759211520 B)
[2025-12-03 09:20:27] 2025-12-03 14:19:20,473 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 09:20:27] 2025-12-03 14:19:20,473 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 09:20:27] 2025-12-03 14:19:20,473 | INFO     | update_server=False
[2025-12-03 09:20:27] 2025-12-03 14:19:20,473 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 09:20:27] 2025-12-03 14:19:20,473 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 09:20:27] 2025-12-03 14:19:20,473 | INFO     | aborting loop
[2025-12-03 09:20:27] 2025-12-03 14:19:20,499 | INFO     | all job control threads have been joined
[2025-12-03 09:20:27] 2025-12-03 14:19:20,525 | INFO     | all data control threads have been joined
[2025-12-03 09:20:27] 2025-12-03 14:19:20,598 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 09:20:27] 2025-12-03 14:19:20,836 | INFO     | all payload control threads have been joined
[2025-12-03 09:20:27] 2025-12-03 14:19:21,479 | INFO     | [job] retrieve thread has finished
[2025-12-03 09:20:27] 2025-12-03 14:19:21,479 | INFO     | [job] job monitor thread has finished
[2025-12-03 09:20:27] 2025-12-03 14:19:21,512 | INFO     | [job] control thread has finished
[2025-12-03 09:20:27] 2025-12-03 14:19:21,530 | INFO     | [data] control thread has finished
[2025-12-03 09:20:27] 2025-12-03 14:19:21,643 | INFO     | [payload] failed_post thread has finished
[2025-12-03 09:20:27] 2025-12-03 14:19:21,722 | INFO     | [job] validate thread has finished
[2025-12-03 09:20:27] 2025-12-03 14:19:21,726 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 09:20:27] 2025-12-03 14:19:21,730 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 09:20:27] 2025-12-03 14:19:21,730 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 09:20:27] 2025-12-03 14:19:21,842 | INFO     | [payload] control thread has finished
[2025-12-03 09:20:27] 2025-12-03 14:19:22,033 | INFO     | [payload] validate_post thread has finished
[2025-12-03 09:20:27] 2025-12-03 14:19:22,165 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 09:20:27] 2025-12-03 14:19:22,371 | INFO     | [data] copytool_in thread has finished
[2025-12-03 09:20:27] 2025-12-03 14:19:22,604 | INFO     | [data] copytool_out thread has finished
[2025-12-03 09:20:27] 2025-12-03 14:19:22,828 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 09:20:27] 2025-12-03 14:19:23,834 | INFO     | [job] queue monitor thread has finished
[2025-12-03 09:20:27] 2025-12-03 14:19:26,171 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 09:20:27] 2025-12-03 14:19:31,489 | INFO     | job.realtimelogging is not enabled
[2025-12-03 09:20:27] 2025-12-03 14:19:32,495 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 09:20:27] 2025-12-03 14:19:50,156 | INFO     | PID=3274964 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-03 09:20:27] 2025-12-03 14:19:50,156 | INFO     | .. there are 35 such processes running
[2025-12-03 09:20:27] 2025-12-03 14:19:50,157 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 09:20:27] 2025-12-03 14:19:50,157 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 09:20:27] 2025-12-03 14:19:50,157 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 09:20:27] 2025-12-03 14:20:19,458 | INFO     | [monitor] cgroup control has ended
[2025-12-03 09:20:27] 2025-12-03 14:20:21,055 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140601035331392)>', '<ExcThread(monitor, started 140600032614144)>']
[2025-12-03 09:20:27] 2025-12-03 14:20:21,371 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 09:20:27] 2025-12-03 14:20:21,372 | INFO     | [monitor] control thread has ended
[2025-12-03 09:20:27] 2025-12-03 14:20:26,083 | INFO     | all workflow threads have been joined
[2025-12-03 09:20:27] 2025-12-03 14:20:26,083 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 09:20:27] 2025-12-03 14:20:26,083 | INFO     | traces error code: 0
[2025-12-03 09:20:27] 2025-12-03 14:20:26,083 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 09:20:27] 2025-12-03 14:20:26,417 [wrapper] ==== pilot stdout END ====
[2025-12-03 09:20:27] 2025-12-03 14:20:26,424 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 09:20:27] 2025-12-03 14:20:26,438 [wrapper] pilotpid: 3274964
[2025-12-03 09:20:27] 2025-12-03 14:20:26,444 [wrapper] Pilot exit status: 0
[2025-12-03 09:20:27] 2025-12-03 14:20:26,478 [wrapper] pandaids: 6895351386 6895351386
[2025-12-03 09:20:27] 2025-12-03 14:20:26,614 [wrapper] cleanup supervisor_pilot 1162419 3274966
[2025-12-03 09:20:27] 2025-12-03 14:20:26,621 [wrapper] Test setup, not cleaning
[2025-12-03 09:20:27] 2025-12-03 14:20:26,624 [wrapper] apfmon messages muted
[2025-12-03 09:20:27] 2025-12-03 14:20:26,631 [wrapper] ==== wrapper stdout END ====
[2025-12-03 09:20:27] 2025-12-03 14:20:26,636 [wrapper] ==== wrapper stderr END ====
[2025-12-03 09:20:27]  *** Error codes and diagnostics ***
[2025-12-03 09:20:27]     "exeErrorCode": 0,
[2025-12-03 09:20:27]     "exeErrorDiag": "",
[2025-12-03 09:20:27]     "pilotErrorCode": 0,
[2025-12-03 09:20:27]     "pilotErrorDiag": "",
[2025-12-03 09:20:27]  *** Listing of results directory ***
[2025-12-03 09:20:27] total 1714972
[2025-12-03 09:20:27] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-12-03 09:20:27] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 19:13 pilot3.tar.gz
[2025-12-03 09:20:27] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 19:20 queuedata.json
[2025-12-03 09:20:27] -rwx------. 1 boincer umatlas     36292 Nov 22 19:20 runpilot2-wrapper.sh
[2025-12-03 09:20:27] -rw-r--r--. 1 boincer umatlas       100 Dec  2 17:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 09:20:27] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  2 17:08 run_atlas
[2025-12-03 09:20:27] -rw-r--r--. 1 boincer umatlas       105 Dec  2 17:08 job.xml
[2025-12-03 09:20:27] -rw-r--r--. 3 boincer umatlas 410702292 Dec  2 17:09 EVNT.47483658._000548.pool.root.1
[2025-12-03 09:20:27] -rw-r--r--. 3 boincer umatlas 410702292 Dec  2 17:09 ATLAS.root_0
[2025-12-03 09:20:27] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 17:09 start_atlas.sh
[2025-12-03 09:20:27] drwxrwx--x. 2 boincer umatlas      4096 Dec  2 17:09 shared
[2025-12-03 09:20:27] -rw-r--r--. 2 boincer umatlas    590099 Dec  2 17:09 input.tar.gz
[2025-12-03 09:20:27] -rw-r--r--. 1 boincer umatlas         0 Dec  2 17:09 boinc_lockfile
[2025-12-03 09:20:27] -rw-r--r--. 1 boincer umatlas      2784 Dec  2 23:11 pandaJob.out
[2025-12-03 09:20:27] -rw-------. 1 boincer umatlas        57 Dec  2 23:11 setup.sh.local
[2025-12-03 09:20:27] -rw-------. 1 boincer umatlas    989300 Dec  2 23:11 agis_schedconf.cvmfs.json
[2025-12-03 09:20:27] -rw-r--r--. 1 boincer umatlas       533 Dec  3 09:06 boinc_task_state.xml
[2025-12-03 09:20:27] -rw-r--r--. 1 boincer umatlas      7175 Dec  3 09:10 init_data.xml
[2025-12-03 09:20:27] -rw-------. 1 boincer umatlas 917259039 Dec  3 09:18 HITS.47556137._005435.pool.root.1
[2025-12-03 09:20:27] -rw-------. 1 boincer umatlas      1075 Dec  3 09:18 memory_monitor_summary.json
[2025-12-03 09:20:27] -rw-------. 1 boincer umatlas   1516240 Dec  3 09:18 agis_ddmendpoints.agis.ALL.json
[2025-12-03 09:20:27] -rw-------. 1 boincer umatlas   2152696 Dec  3 09:18 log.47556137._005435.job.log.tgz.1
[2025-12-03 09:20:27] -rw-------. 1 boincer umatlas      8654 Dec  3 09:19 heartbeat.json
[2025-12-03 09:20:27] -rw-------. 1 boincer umatlas        96 Dec  3 09:19 pilot_heartbeat.json
[2025-12-03 09:20:27] -rw-r--r--. 1 boincer umatlas      8192 Dec  3 09:20 boinc_mmap_file
[2025-12-03 09:20:27] -rw-r--r--. 1 boincer umatlas        29 Dec  3 09:20 wrapper_checkpoint.txt
[2025-12-03 09:20:27] -rw-------. 1 boincer umatlas      4897 Dec  3 09:20 pilotlog.txt
[2025-12-03 09:20:27] -rw-------. 1 boincer umatlas   4621492 Dec  3 09:20 log.47556137._005435.job.log.1
[2025-12-03 09:20:27] -rw-------. 1 boincer umatlas       353 Dec  3 09:20 output.list
[2025-12-03 09:20:27] -rw-r--r--. 1 boincer umatlas       620 Dec  3 09:20 runtime_log
[2025-12-03 09:20:27] -rw-------. 1 boincer umatlas   6789120 Dec  3 09:20 result.tar.gz
[2025-12-03 09:20:27] -rw-r--r--. 1 boincer umatlas      9430 Dec  3 09:20 runtime_log.err
[2025-12-03 09:20:27] -rw-------. 1 boincer umatlas       791 Dec  3 09:20 HQyNDmd1Ch8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmWTKKDmdnrJjn.diag
[2025-12-03 09:20:27] -rw-r--r--. 1 boincer umatlas     23598 Dec  3 09:20 stderr.txt
[2025-12-03 09:20:27] HITS file was successfully produced:
[2025-12-03 09:20:27] -rw-------. 1 boincer umatlas 917259039 Dec  3 09:18 shared/HITS.pool.root.1
[2025-12-03 09:20:27]  *** Contents of shared directory: ***
[2025-12-03 09:20:27] total 1304076
[2025-12-03 09:20:27] -rw-r--r--. 3 boincer umatlas 410702292 Dec  2 17:09 ATLAS.root_0
[2025-12-03 09:20:27] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 17:09 start_atlas.sh
[2025-12-03 09:20:27] -rw-r--r--. 2 boincer umatlas    590099 Dec  2 17:09 input.tar.gz
[2025-12-03 09:20:27] -rw-------. 1 boincer umatlas 917259039 Dec  3 09:18 HITS.pool.root.1
[2025-12-03 09:20:27] -rw-------. 1 boincer umatlas   6789120 Dec  3 09:20 result.tar.gz
09:20:28 (3253974): run_atlas exited; CPU time 139821.493403
09:20:28 (3253974): called boinc_finish(0)

</stderr_txt>
]]>

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