Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
01:12:44 (12291): wrapper (7.7.26015): starting
01:12:44 (12291): wrapper: running run_atlas (--nthreads 8)
[2025-12-03 01:12:44] Arguments: --nthreads 8
[2025-12-03 01:12:44] Threads: 8
[2025-12-03 01:12:44] Checking for CVMFS
[2025-12-03 01:12:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 01:12:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 01:12:44] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 01:12:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 01:12:44] 2.11.0.0 4422 74677 120504 153574 1 239 3781248 4096000 2582 130560 1 9820909 99.677 5490673 531 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-03 01:12:44] CVMFS is ok
[2025-12-03 01:12:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-03 01:12:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-03 01:12:44] Further information can be found at the LHC@home message board.
[2025-12-03 01:12:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 01:12:44] Checking for apptainer binary...
[2025-12-03 01:12:44] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-03 01:12:44] apptainer is not installed, using version from CVMFS
[2025-12-03 01:12:44] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 01:12:44] WARNING: Environment variable TMPDIR already has value [/tmp/job_10946064/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node145
[2025-12-03 01:12:44] apptainer works
[2025-12-03 01:12:44] Set ATHENA_PROC_NUMBER=8
[2025-12-03 01:12:44] Set ATHENA_CORE_NUMBER=8
[2025-12-03 01:12:44] Starting ATLAS job with PandaID=6899134332
[2025-12-03 01:12:44] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10946064/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 04:53:39]  *** The last 200 lines of the pilot log: ***
[2025-12-03 04:53:39] 2025-12-03 03:53:05,570 | INFO     | maximum number of monitored processes: 16
[2025-12-03 04:53:39] 2025-12-03 03:53:05,861 | INFO     | time since job start (13216s) is within the limit (172800.0s)
[2025-12-03 04:53:39] 2025-12-03 03:53:06,356 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 04:53:39] 2025-12-03 03:53:06,373 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2738.8563593750005
[2025-12-03 04:53:39] 2025-12-03 03:53:06,378 | INFO     | using path: /tmp/job_10946064/atlas/pilot/slots/0/PanDA_Pilot-6899134332/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 04:53:39] 2025-12-03 03:53:06,378 | INFO     | extracted standard info from prmon json
[2025-12-03 04:53:39] 2025-12-03 03:53:06,378 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 04:53:39] 2025-12-03 03:53:06,378 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 04:53:39] 2025-12-03 03:53:06,380 | INFO     | fitting pss+swap vs Time
[2025-12-03 04:53:39] 2025-12-03 03:53:06,380 | INFO     | sum of square deviations: 3168461268.0
[2025-12-03 04:53:39] 2025-12-03 03:53:06,381 | INFO     | sum of deviations: 79618417621.00002
[2025-12-03 04:53:39] 2025-12-03 03:53:06,381 | INFO     | mean x: 1764727378.0
[2025-12-03 04:53:39] 2025-12-03 03:53:06,381 | INFO     | mean y: 3435599.285714286
[2025-12-03 04:53:39] 2025-12-03 03:53:06,381 | INFO     | intersect: -44341370754.46403
[2025-12-03 04:53:39] 2025-12-03 03:53:06,381 | INFO     | chi2: 3.5410332945941443
[2025-12-03 04:53:39] 2025-12-03 03:53:06,382 | INFO     | sum of square deviations: 2954447953.0
[2025-12-03 04:53:39] 2025-12-03 03:53:06,382 | INFO     | sum of deviations: 133053669669.49998
[2025-12-03 04:53:39] 2025-12-03 03:53:06,382 | INFO     | mean x: 1764727225.5
[2025-12-03 04:53:39] 2025-12-03 03:53:06,382 | INFO     | mean y: 3473304.287735849
[2025-12-03 04:53:39] 2025-12-03 03:53:06,382 | INFO     | intersect: -79471080674.5788
[2025-12-03 04:53:39] 2025-12-03 03:53:06,383 | INFO     | chi2: 1.6759922102879472
[2025-12-03 04:53:39] 2025-12-03 03:53:06,383 | INFO     | current chi2=1.6759922102879472 (change=52.66940266146125 %)
[2025-12-03 04:53:39] 2025-12-03 03:53:06,383 | INFO     | sum of square deviations: 2750295288.0
[2025-12-03 04:53:39] 2025-12-03 03:53:06,383 | INFO     | sum of deviations: 120723657471.99992
[2025-12-03 04:53:39] 2025-12-03 03:53:06,383 | INFO     | mean x: 1764727073.0
[2025-12-03 04:53:39] 2025-12-03 03:53:06,383 | INFO     | mean y: 3464099.236714976
[2025-12-03 04:53:39] 2025-12-03 03:53:06,384 | INFO     | intersect: -77458875171.01004
[2025-12-03 04:53:39] 2025-12-03 03:53:06,384 | INFO     | chi2: 1.6677239765170633
[2025-12-03 04:53:39] 2025-12-03 03:53:06,384 | INFO     | current chi2=1.6677239765170633 (change=0.49333366349378116 %)
[2025-12-03 04:53:39] 2025-12-03 03:53:06,384 | INFO     | right removable region: 206
[2025-12-03 04:53:39] 2025-12-03 03:53:06,384 | INFO     | sum of square deviations: 2954447953.0
[2025-12-03 04:53:39] 2025-12-03 03:53:06,385 | INFO     | sum of deviations: 28888078568.49999
[2025-12-03 04:53:39] 2025-12-03 03:53:06,385 | INFO     | mean x: 1764727530.5
[2025-12-03 04:53:39] 2025-12-03 03:53:06,385 | INFO     | mean y: 3471399.1273584906
[2025-12-03 04:53:39] 2025-12-03 03:53:06,385 | INFO     | intersect: -17251727664.817352
[2025-12-03 04:53:39] 2025-12-03 03:53:06,385 | INFO     | chi2: 1.9457433455838182
[2025-12-03 04:53:39] 2025-12-03 03:53:06,385 | INFO     | current chi2=1.9457433455838182 (change=45.05153768098558 %)
[2025-12-03 04:53:39] 2025-12-03 03:53:06,385 | INFO     | sum of square deviations: 2750295288.0
[2025-12-03 04:53:39] 2025-12-03 03:53:06,386 | INFO     | sum of deviations: 19853560871.0
[2025-12-03 04:53:39] 2025-12-03 03:53:06,386 | INFO     | mean x: 1764727683.0
[2025-12-03 04:53:39] 2025-12-03 03:53:06,386 | INFO     | mean y: 3478140.0
[2025-12-03 04:53:39] 2025-12-03 03:53:06,386 | INFO     | intersect: -12735564328.65702
[2025-12-03 04:53:39] 2025-12-03 03:53:06,386 | INFO     | chi2: 1.934485308970927
[2025-12-03 04:53:39] 2025-12-03 03:53:06,386 | INFO     | current chi2=1.934485308970927 (change=0.5785982328267036 %)
[2025-12-03 04:53:39] 2025-12-03 03:53:06,386 | INFO     | left removable region: 20
[2025-12-03 04:53:39] 2025-12-03 03:53:06,386 | INFO     | sum of square deviations: 1995283922.5
[2025-12-03 04:53:39] 2025-12-03 03:53:06,387 | INFO     | sum of deviations: 46479152153.99999
[2025-12-03 04:53:39] 2025-12-03 03:53:06,387 | INFO     | mean x: 1764727652.5
[2025-12-03 04:53:39] 2025-12-03 03:53:06,387 | INFO     | mean y: 3521704.4086021506
[2025-12-03 04:53:39] 2025-12-03 03:53:06,387 | INFO     | intersect: -41104936167.665855
[2025-12-03 04:53:39] 2025-12-03 03:53:06,387 | INFO     | chi2: 0.008419552157167784
[2025-12-03 04:53:39] 2025-12-03 03:53:06,387 | INFO     | current memory leak: 23.29 B/s (using 186 data points, chi2=0.01)
[2025-12-03 04:53:39] 2025-12-03 03:53:06,387 | INFO     | could have reported an average CPU frequency of 2819 MHz (11 samples)
[2025-12-03 04:53:39] 2025-12-03 03:53:06,387 | INFO     | ..............................
[2025-12-03 04:53:39] 2025-12-03 03:53:06,387 | INFO     | . Timing measurements:
[2025-12-03 04:53:39] 2025-12-03 03:53:06,387 | INFO     | . get job = 0 s
[2025-12-03 04:53:39] 2025-12-03 03:53:06,388 | INFO     | . initial setup = 1 s
[2025-12-03 04:53:39] 2025-12-03 03:53:06,388 | INFO     | . payload setup = 5 s
[2025-12-03 04:53:39] 2025-12-03 03:53:06,388 | INFO     | . stage-in = 0 s
[2025-12-03 04:53:39] 2025-12-03 03:53:06,388 | INFO     | . payload execution = 13189 s
[2025-12-03 04:53:39] 2025-12-03 03:53:06,388 | INFO     | . stage-out = 1 s
[2025-12-03 04:53:39] 2025-12-03 03:53:06,388 | INFO     | . log creation = 0 s
[2025-12-03 04:53:39] 2025-12-03 03:53:06,388 | INFO     | ..............................
[2025-12-03 04:53:39] 2025-12-03 03:53:06,603 | INFO     | 
[2025-12-03 04:53:39] 2025-12-03 03:53:06,603 | INFO     | job summary report
[2025-12-03 04:53:39] 2025-12-03 03:53:06,603 | INFO     | --------------------------------------------------
[2025-12-03 04:53:39] 2025-12-03 03:53:06,603 | INFO     | PanDA job id: 6899134332
[2025-12-03 04:53:39] 2025-12-03 03:53:06,604 | INFO     | task id: 47531058
[2025-12-03 04:53:39] 2025-12-03 03:53:06,604 | INFO     | errors: (none)
[2025-12-03 04:53:39] 2025-12-03 03:53:06,604 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 04:53:39] 2025-12-03 03:53:06,604 | INFO     | pilot state: finished 
[2025-12-03 04:53:39] 2025-12-03 03:53:06,604 | INFO     | transexitcode: 0
[2025-12-03 04:53:39] 2025-12-03 03:53:06,604 | INFO     | exeerrorcode: 0
[2025-12-03 04:53:39] 2025-12-03 03:53:06,604 | INFO     | exeerrordiag: 
[2025-12-03 04:53:39] 2025-12-03 03:53:06,604 | INFO     | exitcode: 0
[2025-12-03 04:53:39] 2025-12-03 03:53:06,604 | INFO     | exitmsg: OK
[2025-12-03 04:53:39] 2025-12-03 03:53:06,604 | INFO     | cpuconsumptiontime: 99788 s
[2025-12-03 04:53:39] 2025-12-03 03:53:06,604 | INFO     | nevents: 1000
[2025-12-03 04:53:39] 2025-12-03 03:53:06,604 | INFO     | neventsw: 0
[2025-12-03 04:53:39] 2025-12-03 03:53:06,604 | INFO     | pid: 26410
[2025-12-03 04:53:39] 2025-12-03 03:53:06,604 | INFO     | pgrp: 26410
[2025-12-03 04:53:39] 2025-12-03 03:53:06,604 | INFO     | corecount: 8
[2025-12-03 04:53:39] 2025-12-03 03:53:06,604 | INFO     | event service: False
[2025-12-03 04:53:39] 2025-12-03 03:53:06,604 | INFO     | sizes: {0: 2284579, 2: 2284841, 10: 2284869, 13198: 2335216, 13199: 2344240, 13202: 2344296, 13204: 2344670}
[2025-12-03 04:53:39] 2025-12-03 03:53:06,604 | INFO     | --------------------------------------------------
[2025-12-03 04:53:39] 2025-12-03 03:53:06,604 | INFO     | 
[2025-12-03 04:53:39] 2025-12-03 03:53:06,604 | INFO     | executing command: ls -lF /tmp/job_10946064/atlas/pilot/slots/0
[2025-12-03 04:53:39] 2025-12-03 03:53:06,613 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 04:53:39] 2025-12-03 03:53:06,613 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 04:53:39] 2025-12-03 03:53:06,613 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 04:53:39] 2025-12-03 03:53:06,613 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 04:53:39] 2025-12-03 03:53:06,613 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 04:53:39] 2025-12-03 03:53:06,613 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 04:53:39] 2025-12-03 03:53:06,613 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 04:53:39] 2025-12-03 03:53:06,613 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 04:53:39] 2025-12-03 03:53:06,613 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 04:53:39] 2025-12-03 03:53:06,613 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 04:53:39] 2025-12-03 03:53:06,613 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 04:53:39] 2025-12-03 03:53:06,613 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 04:53:39] 2025-12-03 03:53:06,613 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 04:53:39] 2025-12-03 03:53:06,613 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 04:53:39] 2025-12-03 03:53:06,613 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 04:53:39] 2025-12-03 03:53:06,613 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 04:53:39] 2025-12-03 03:53:06,613 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 04:53:39] 2025-12-03 03:53:06,613 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 04:53:39] 2025-12-03 03:53:06,613 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 04:53:39] 2025-12-03 03:53:06,614 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 04:53:39] 2025-12-03 03:53:06,614 | INFO     | job 6899134332 has completed (purged errors)
[2025-12-03 04:53:39] 2025-12-03 03:53:06,614 | INFO     | overall cleanup function is called
[2025-12-03 04:53:39] 2025-12-03 03:53:07,621 | INFO     | --- collectZombieJob: --- 10, [26410]
[2025-12-03 04:53:39] 2025-12-03 03:53:07,621 | INFO     | zombie collector waiting for pid 26410
[2025-12-03 04:53:39] 2025-12-03 03:53:07,621 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 04:53:39] 2025-12-03 03:53:07,621 | INFO     | collected zombie processes
[2025-12-03 04:53:39] 2025-12-03 03:53:07,621 | INFO     | will attempt to kill all subprocesses of pid=26410
[2025-12-03 04:53:39] 2025-12-03 03:53:07,724 | INFO     | process IDs to be killed: [26410] (in reverse order)
[2025-12-03 04:53:39] 2025-12-03 03:53:07,759 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 04:53:39] 2025-12-03 03:53:07,760 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 04:53:39] 2025-12-03 03:53:07,765 | INFO     | did not find any defunct processes belonging to 26410
[2025-12-03 04:53:39] 2025-12-03 03:53:07,768 | INFO     | did not find any defunct processes belonging to 26410
[2025-12-03 04:53:39] 2025-12-03 03:53:07,769 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 04:53:39] 2025-12-03 03:53:07,769 | INFO     | ready for new job
[2025-12-03 04:53:39] 2025-12-03 03:53:07,769 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 04:53:39] 2025-12-03 03:53:07,770 | INFO     | ***************************************
[2025-12-03 04:53:39] 2025-12-03 03:53:07,770 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 04:53:39] 2025-12-03 03:53:07,770 | INFO     | ***************************************
[2025-12-03 04:53:39] 2025-12-03 03:53:07,770 | INFO     | 
[2025-12-03 04:53:39] 2025-12-03 03:53:07,784 | INFO     | architecture information:
[2025-12-03 04:53:39] 2025-12-03 03:53:07,785 | INFO     | executing command: cat /etc/os-release
[2025-12-03 04:53:39] 2025-12-03 03:53:07,790 | INFO     | cat /etc/os-release:
[2025-12-03 04:53:39] NAME="CentOS Linux"
[2025-12-03 04:53:39] VERSION="7 (Core)"
[2025-12-03 04:53:39] ID="centos"
[2025-12-03 04:53:39] ID_LIKE="rhel fedora"
[2025-12-03 04:53:39] VERSION_ID="7"
[2025-12-03 04:53:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 04:53:39] ANSI_COLOR="0;31"
[2025-12-03 04:53:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 04:53:39] HOME_URL="https://www.centos.org/"
[2025-12-03 04:53:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 04:53:39] 
[2025-12-03 04:53:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 04:53:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 04:53:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 04:53:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 04:53:39] 
[2025-12-03 04:53:39] 2025-12-03 03:53:07,790 | INFO     | ***************************************
[2025-12-03 04:53:39] 2025-12-03 03:53:08,293 | INFO     | executing command: df -mP /tmp/job_10946064/atlas/pilot/slots/0
[2025-12-03 04:53:39] 2025-12-03 03:53:08,300 | INFO     | sufficient remaining disk space (220098199552 B)
[2025-12-03 04:53:39] 2025-12-03 03:53:08,300 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 04:53:39] 2025-12-03 03:53:08,300 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 04:53:39] 2025-12-03 03:53:08,300 | INFO     | update_server=False
[2025-12-03 04:53:39] 2025-12-03 03:53:08,300 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 04:53:39] 2025-12-03 03:53:08,300 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 04:53:39] 2025-12-03 03:53:08,986 | INFO     | all data control threads have been joined
[2025-12-03 04:53:39] 2025-12-03 03:53:09,078 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 04:53:39] 2025-12-03 03:53:09,078 | INFO     | aborting loop
[2025-12-03 04:53:39] 2025-12-03 03:53:09,165 | INFO     | all job control threads have been joined
[2025-12-03 04:53:39] 2025-12-03 03:53:09,305 | INFO     | [job] retrieve thread has finished
[2025-12-03 04:53:39] 2025-12-03 03:53:09,305 | INFO     | [job] queue monitor thread has finished
[2025-12-03 04:53:39] 2025-12-03 03:53:09,435 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 04:53:39] 2025-12-03 03:53:09,514 | INFO     | [payload] validate_post thread has finished
[2025-12-03 04:53:39] 2025-12-03 03:53:09,542 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 04:53:39] 2025-12-03 03:53:09,626 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 04:53:39] 2025-12-03 03:53:09,767 | INFO     | [payload] failed_post thread has finished
[2025-12-03 04:53:39] 2025-12-03 03:53:09,767 | INFO     | all payload control threads have been joined
[2025-12-03 04:53:39] 2025-12-03 03:53:09,773 | INFO     | [data] copytool_in thread has finished
[2025-12-03 04:53:39] 2025-12-03 03:53:09,948 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 04:53:39] 2025-12-03 03:53:09,992 | INFO     | [data] control thread has finished
[2025-12-03 04:53:39] 2025-12-03 03:53:10,083 | INFO     | [job] job monitor thread has finished
[2025-12-03 04:53:39] 2025-12-03 03:53:10,170 | INFO     | [job] control thread has finished
[2025-12-03 04:53:39] 2025-12-03 03:53:10,554 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 04:53:39] 2025-12-03 03:53:10,772 | INFO     | [payload] control thread has finished
[2025-12-03 04:53:39] 2025-12-03 03:53:10,773 | INFO     | [job] validate thread has finished
[2025-12-03 04:53:39] 2025-12-03 03:53:11,181 | INFO     | [monitor] cgroup control has ended
[2025-12-03 04:53:39] 2025-12-03 03:53:11,631 | INFO     | [data] copytool_out thread has finished
[2025-12-03 04:53:39] 2025-12-03 03:53:14,559 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 04:53:39] 2025-12-03 03:53:18,774 | INFO     | job.realtimelogging is not enabled
[2025-12-03 04:53:39] 2025-12-03 03:53:19,779 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 04:53:39] 2025-12-03 03:53:21,889 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456067122944)>']
[2025-12-03 04:53:39] 2025-12-03 03:53:26,914 | INFO     | all workflow threads have been joined
[2025-12-03 04:53:39] 2025-12-03 03:53:26,914 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 04:53:39] 2025-12-03 03:53:26,915 | INFO     | traces error code: 0
[2025-12-03 04:53:39] 2025-12-03 03:53:26,915 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 04:53:39] 2025-12-03 03:53:39,054 | INFO     | PID=17061 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-03 04:53:39] 2025-12-03 03:53:39,054 | INFO     | .. there are 4 such processes running
[2025-12-03 04:53:39] 2025-12-03 03:53:39,054 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 04:53:39] 2025-12-03 03:53:39,054 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 04:53:39] 2025-12-03 03:53:39,055 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 04:53:39] 2025-12-03 03:53:39,055 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 04:53:39] 2025-12-03 03:53:39,055 | INFO     | [monitor] control thread has ended
[2025-12-03 04:53:39] 2025-12-03 03:53:39,105 [wrapper] ==== pilot stdout END ====
[2025-12-03 04:53:39] 2025-12-03 03:53:39,106 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 04:53:39] 2025-12-03 03:53:39,108 [wrapper] pilotpid: 17061
[2025-12-03 04:53:39] 2025-12-03 03:53:39,109 [wrapper] Pilot exit status: 0
[2025-12-03 04:53:39] 2025-12-03 03:53:39,113 [wrapper] pandaids: 6899134332
[2025-12-03 04:53:39] 2025-12-03 03:53:39,135 [wrapper] cleanup supervisor_pilot 10617 17062
[2025-12-03 04:53:39] 2025-12-03 03:53:39,136 [wrapper] Test setup, not cleaning
[2025-12-03 04:53:39] 2025-12-03 03:53:39,138 [wrapper] apfmon messages muted
[2025-12-03 04:53:39] 2025-12-03 03:53:39,139 [wrapper] ==== wrapper stdout END ====
[2025-12-03 04:53:39] 2025-12-03 03:53:39,140 [wrapper] ==== wrapper stderr END ====
[2025-12-03 04:53:39]  *** Error codes and diagnostics ***
[2025-12-03 04:53:39]     "exeErrorCode": 0,
[2025-12-03 04:53:39]     "exeErrorDiag": "",
[2025-12-03 04:53:39]     "pilotErrorCode": 0,
[2025-12-03 04:53:39]     "pilotErrorDiag": "",
[2025-12-03 04:53:39]  *** Listing of results directory ***
[2025-12-03 04:53:39] total 1058012
[2025-12-03 04:53:39] -rw------- 1 mf493845 unix-user    576529 Nov 28 23:41 pilot3.tar.gz
[2025-12-03 04:53:39] -rwx------ 1 mf493845 unix-user     36292 Nov 28 23:46 runpilot2-wrapper.sh
[2025-12-03 04:53:39] -rw------- 1 mf493845 unix-user      5112 Nov 28 23:49 queuedata.json
[2025-12-03 04:53:39] -rw------- 1 mf493845 unix-user       100 Dec  2 23:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 04:53:39] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  2 23:36 run_atlas
[2025-12-03 04:53:39] -rw------- 1 mf493845 unix-user       105 Dec  2 23:36 job.xml
[2025-12-03 04:53:39] -rw-r--r-- 2 mf493845 unix-user 378209657 Dec  3 01:12 EVNT.47531050._000510.pool.root.1
[2025-12-03 04:53:39] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 01:12 start_atlas.sh
[2025-12-03 04:53:39] drwxrwx--x 2 mf493845 unix-user       100 Dec  3 01:12 shared
[2025-12-03 04:53:39] -rw-r--r-- 2 mf493845 unix-user    590126 Dec  3 01:12 input.tar.gz
[2025-12-03 04:53:39] -rw------- 1 mf493845 unix-user      6391 Dec  3 01:12 init_data.xml
[2025-12-03 04:53:39] -rw------- 1 mf493845 unix-user         0 Dec  3 01:12 boinc_setup_complete
[2025-12-03 04:53:39] -rw------- 1 mf493845 unix-user      8192 Dec  3 01:12 boinc_mmap_file
[2025-12-03 04:53:39] -rw------- 1 mf493845 unix-user         0 Dec  3 01:12 boinc_lockfile
[2025-12-03 04:53:39] -rw------- 1 mf493845 unix-user      2880 Dec  3 01:12 pandaJob.out
[2025-12-03 04:53:39] -rw------- 1 mf493845 unix-user    989284 Dec  3 01:12 agis_schedconf.cvmfs.json
[2025-12-03 04:53:39] drwx------ 5 mf493845 unix-user       440 Dec  3 01:12 pilot3
[2025-12-03 04:53:39] -rw------- 1 mf493845 unix-user 694187630 Dec  3 04:52 HITS.47531058._001276.pool.root.1
[2025-12-03 04:53:39] -rw------- 1 mf493845 unix-user        95 Dec  3 04:52 pilot_heartbeat.json
[2025-12-03 04:53:39] -rw------- 1 mf493845 unix-user      1028 Dec  3 04:52 memory_monitor_summary.json
[2025-12-03 04:53:39] -rw------- 1 mf493845 unix-user   1516240 Dec  3 04:53 agis_ddmendpoints.agis.ALL.json
[2025-12-03 04:53:39] -rw------- 1 mf493845 unix-user   1624063 Dec  3 04:53 log.47531058._001276.job.log.tgz.1
[2025-12-03 04:53:39] -rw------- 1 mf493845 unix-user     27965 Dec  3 04:53 heartbeat.json
[2025-12-03 04:53:39] -rw------- 1 mf493845 unix-user       820 Dec  3 04:53 pilotlog.txt
[2025-12-03 04:53:39] -rw------- 1 mf493845 unix-user   1917299 Dec  3 04:53 log.47531058._001276.job.log.1
[2025-12-03 04:53:39] -rw------- 1 mf493845 unix-user       353 Dec  3 04:53 output.list
[2025-12-03 04:53:39] -rw------- 1 mf493845 unix-user       620 Dec  3 04:53 runtime_log
[2025-12-03 04:53:39] -rw------- 1 mf493845 unix-user   3584000 Dec  3 04:53 result.tar.gz
[2025-12-03 04:53:39] -rw------- 1 mf493845 unix-user      9221 Dec  3 04:53 runtime_log.err
[2025-12-03 04:53:39] -rw------- 1 mf493845 unix-user       650 Dec  3 04:53 FTQMDmZPMj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmAcLKDm9D1kMm.diag
[2025-12-03 04:53:39] -rw------- 1 mf493845 unix-user     21646 Dec  3 04:53 stderr.txt
[2025-12-03 04:53:39] HITS file was successfully produced:
[2025-12-03 04:53:39] -rw------- 1 mf493845 unix-user 694187630 Dec  3 04:52 shared/HITS.pool.root.1
[2025-12-03 04:53:39]  *** Contents of shared directory: ***
[2025-12-03 04:53:39] total 1051364
[2025-12-03 04:53:39] -rw-r--r-- 2 mf493845 unix-user 378209657 Dec  3 01:12 ATLAS.root_0
[2025-12-03 04:53:39] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 01:12 start_atlas.sh
[2025-12-03 04:53:39] -rw-r--r-- 2 mf493845 unix-user    590126 Dec  3 01:12 input.tar.gz
[2025-12-03 04:53:39] -rw------- 1 mf493845 unix-user 694187630 Dec  3 04:52 HITS.pool.root.1
[2025-12-03 04:53:39] -rw------- 1 mf493845 unix-user   3584000 Dec  3 04:53 result.tar.gz
04:53:40 (12291): run_atlas exited; CPU time 99914.981788
04:53:40 (12291): called boinc_finish(0)

</stderr_txt>
]]>

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