Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
15:54:05 (7030): wrapper (7.7.26015): starting
15:54:05 (7030): wrapper: running run_atlas (--nthreads 12)
[2025-12-02 15:54:05] Arguments: --nthreads 12
[2025-12-02 15:54:05] Threads: 12
[2025-12-02 15:54:05] Checking for CVMFS
[2025-12-02 15:54:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 15:54:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 15:54:05] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 15:54:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 15:54:05] 2.11.2.0 2981 296781 92876 153568 0 81 15484433 20275200 1 130560 1 134893004 99.964 17828941 14753 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-02 15:54:05] CVMFS is ok
[2025-12-02 15:54:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 15:54:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 15:54:05] Further information can be found at the LHC@home message board.
[2025-12-02 15:54:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 15:54:05] Checking for apptainer binary...
[2025-12-02 15:54:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 15:54:05] Running /usr/bin/apptainer --version
[2025-12-02 15:54:05] apptainer version 1.3.2-1.el7
[2025-12-02 15:54:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 15:54:07] c-205-30.aglt2.org
[2025-12-02 15:54:07] apptainer works
[2025-12-02 15:54:07] Set ATHENA_PROC_NUMBER=12
[2025-12-02 15:54:07] Set ATHENA_CORE_NUMBER=12
[2025-12-02 15:54:07] Starting ATLAS job with PandaID=6895475922
[2025-12-02 15:54:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
22:48:10 (9461): wrapper (7.7.26015): starting
22:48:10 (9461): wrapper: running run_atlas (--nthreads 12)
[2025-12-02 22:48:10] Arguments: --nthreads 12
[2025-12-02 22:48:10] Threads: 12
[2025-12-02 22:48:10] This job has been restarted, cleaning up previous attempt
[2025-12-02 22:48:10] Checking for CVMFS
[2025-12-02 22:48:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 22:48:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 22:48:11] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 22:48:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 22:48:11] 2.11.2.0 2981 297195 94196 153579 3 57 16041896 20275201 1 130560 1 135056865 99.964 17842203 14761 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-02 22:48:11] CVMFS is ok
[2025-12-02 22:48:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 22:48:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 22:48:11] Further information can be found at the LHC@home message board.
[2025-12-02 22:48:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 22:48:11] Checking for apptainer binary...
[2025-12-02 22:48:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 22:48:11] Running /usr/bin/apptainer --version
[2025-12-02 22:48:11] apptainer version 1.3.2-1.el7
[2025-12-02 22:48:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 22:48:12] c-205-30.aglt2.org
[2025-12-02 22:48:12] apptainer works
[2025-12-02 22:48:12] Set ATHENA_PROC_NUMBER=12
[2025-12-02 22:48:12] Set ATHENA_CORE_NUMBER=12
[2025-12-02 22:48:12] Starting ATLAS job with PandaID=6895475922
[2025-12-02 22:48:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 06:06:16]  *** The last 200 lines of the pilot log: ***
[2025-12-03 06:06:16] 2025-12-03 11:05:34,069 | INFO     | monitor loop #1963: job 0:6895475922 is in state 'finished'
[2025-12-03 06:06:16] 2025-12-03 11:05:34,069 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 06:06:16] 2025-12-03 11:05:35,359 | INFO     | time since job start (26227s) is within the limit (172800.0s)
[2025-12-03 06:06:16] 2025-12-03 11:05:36,118 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-03 06:06:16] 2025-12-03 11:05:36,121 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-12-03 06:06:16] 2025-12-03 11:05:36,124 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895475922/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 06:06:16] 2025-12-03 11:05:36,124 | INFO     | extracted standard info from prmon json
[2025-12-03 06:06:16] 2025-12-03 11:05:36,125 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 06:06:16] 2025-12-03 11:05:36,125 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 06:06:16] 2025-12-03 11:05:36,133 | INFO     | fitting pss+swap vs Time
[2025-12-03 06:06:16] 2025-12-03 11:05:36,133 | INFO     | sum of square deviations: 24653840923.090416
[2025-12-03 06:06:16] 2025-12-03 11:05:36,137 | INFO     | sum of deviations: 331308141267.17664
[2025-12-03 06:06:16] 2025-12-03 11:05:36,138 | INFO     | mean x: 1764746821.6953487
[2025-12-03 06:06:16] 2025-12-03 11:05:36,138 | INFO     | mean y: 3416360.6883720933
[2025-12-03 06:06:16] 2025-12-03 11:05:36,138 | INFO     | intersect: -23711954851.731747
[2025-12-03 06:06:16] 2025-12-03 11:05:36,138 | INFO     | chi2: 6.402028175257312
[2025-12-03 06:06:16] 2025-12-03 11:05:36,139 | INFO     | sum of square deviations: 23803813395.397564
[2025-12-03 06:06:16] 2025-12-03 11:05:36,143 | INFO     | sum of deviations: 506696025342.3272
[2025-12-03 06:06:16] 2025-12-03 11:05:36,143 | INFO     | mean x: 1764746669.197647
[2025-12-03 06:06:16] 2025-12-03 11:05:36,143 | INFO     | mean y: 3447800.1270588236
[2025-12-03 06:06:16] 2025-12-03 11:05:36,143 | INFO     | intersect: -37561546857.05039
[2025-12-03 06:06:16] 2025-12-03 11:05:36,144 | INFO     | chi2: 2.989661671396354
[2025-12-03 06:06:16] 2025-12-03 11:05:36,144 | INFO     | current chi2=2.989661671396354 (change=53.30133530260209 %)
[2025-12-03 06:06:16] 2025-12-03 11:05:36,144 | INFO     | sum of square deviations: 22973553680.19998
[2025-12-03 06:06:16] 2025-12-03 11:05:36,148 | INFO     | sum of deviations: 571485501989.5002
[2025-12-03 06:06:16] 2025-12-03 11:05:36,148 | INFO     | mean x: 1764746516.7
[2025-12-03 06:06:16] 2025-12-03 11:05:36,148 | INFO     | mean y: 3459655.5595238097
[2025-12-03 06:06:16] 2025-12-03 11:05:36,148 | INFO     | intersect: -43896019851.162674
[2025-12-03 06:06:16] 2025-12-03 11:05:36,149 | INFO     | chi2: 2.2748729969923085
[2025-12-03 06:06:16] 2025-12-03 11:05:36,149 | INFO     | current chi2=2.2748729969923085 (change=23.908681080631965 %)
[2025-12-03 06:06:16] 2025-12-03 11:05:36,149 | INFO     | right removable region: 419
[2025-12-03 06:06:16] 2025-12-03 11:05:36,149 | INFO     | sum of square deviations: 23803762155.397564
[2025-12-03 06:06:16] 2025-12-03 11:05:36,153 | INFO     | sum of deviations: 200604083327.4472
[2025-12-03 06:06:16] 2025-12-03 11:05:36,153 | INFO     | mean x: 1764746974.197647
[2025-12-03 06:06:16] 2025-12-03 11:05:36,154 | INFO     | mean y: 3439725.4470588234
[2025-12-03 06:06:16] 2025-12-03 11:05:36,154 | INFO     | intersect: -14868808062.641817
[2025-12-03 06:06:16] 2025-12-03 11:05:36,154 | INFO     | chi2: 4.281399420297486
[2025-12-03 06:06:16] 2025-12-03 11:05:36,154 | INFO     | current chi2=4.281399420297486 (change=33.12432711801668 %)
[2025-12-03 06:06:16] 2025-12-03 11:05:36,155 | INFO     | sum of square deviations: 22973502682.990646
[2025-12-03 06:06:16] 2025-12-03 11:05:36,158 | INFO     | sum of deviations: 168421506288.83783
[2025-12-03 06:06:16] 2025-12-03 11:05:36,159 | INFO     | mean x: 1764747126.695238
[2025-12-03 06:06:16] 2025-12-03 11:05:36,159 | INFO     | mean y: 3445631.069047619
[2025-12-03 06:06:16] 2025-12-03 11:05:36,159 | INFO     | intersect: -12934127424.21304
[2025-12-03 06:06:16] 2025-12-03 11:05:36,159 | INFO     | chi2: 4.229790461557861
[2025-12-03 06:06:16] 2025-12-03 11:05:36,159 | INFO     | current chi2=4.229790461557861 (change=1.2054226591182977 %)
[2025-12-03 06:06:16] 2025-12-03 11:05:36,160 | INFO     | left removable region: 20
[2025-12-03 06:06:16] 2025-12-03 11:05:36,160 | INFO     | sum of square deviations: 19696999737.358395
[2025-12-03 06:06:16] 2025-12-03 11:05:36,163 | INFO     | sum of deviations: 370516401239.66656
[2025-12-03 06:06:16] 2025-12-03 11:05:36,164 | INFO     | mean x: 1764747096.197995
[2025-12-03 06:06:16] 2025-12-03 11:05:36,164 | INFO     | mean y: 3497932.3333333335
[2025-12-03 06:06:16] 2025-12-03 11:05:36,164 | INFO     | intersect: -33192813785.195496
[2025-12-03 06:06:16] 2025-12-03 11:05:36,164 | INFO     | chi2: 0.04495457601019768
[2025-12-03 06:06:16] 2025-12-03 11:05:36,164 | INFO     | current memory leak: 18.81 B/s (using 399 data points, chi2=0.04)
[2025-12-03 06:06:16] 2025-12-03 11:05:36,165 | INFO     | could have reported an average CPU frequency of 2383 MHz (18 samples)
[2025-12-03 06:06:16] 2025-12-03 11:05:36,165 | INFO     | ..............................
[2025-12-03 06:06:16] 2025-12-03 11:05:36,165 | INFO     | . Timing measurements:
[2025-12-03 06:06:16] 2025-12-03 11:05:36,165 | INFO     | . get job = 0 s
[2025-12-03 06:06:16] 2025-12-03 11:05:36,165 | INFO     | . initial setup = 2 s
[2025-12-03 06:06:16] 2025-12-03 11:05:36,166 | INFO     | . payload setup = 7 s
[2025-12-03 06:06:16] 2025-12-03 11:05:36,166 | INFO     | . stage-in = 0 s
[2025-12-03 06:06:16] 2025-12-03 11:05:36,166 | INFO     | . payload execution = 26190 s
[2025-12-03 06:06:16] 2025-12-03 11:05:36,166 | INFO     | . stage-out = 3 s
[2025-12-03 06:06:16] 2025-12-03 11:05:36,166 | INFO     | . log creation = 0 s
[2025-12-03 06:06:16] 2025-12-03 11:05:36,166 | INFO     | ..............................
[2025-12-03 06:06:16] 2025-12-03 11:05:36,314 | INFO     | 
[2025-12-03 06:06:16] 2025-12-03 11:05:36,314 | INFO     | job summary report
[2025-12-03 06:06:16] 2025-12-03 11:05:36,314 | INFO     | --------------------------------------------------
[2025-12-03 06:06:16] 2025-12-03 11:05:36,314 | INFO     | PanDA job id: 6895475922
[2025-12-03 06:06:16] 2025-12-03 11:05:36,314 | INFO     | task id: 47556149
[2025-12-03 06:06:16] 2025-12-03 11:05:36,314 | INFO     | errors: (none)
[2025-12-03 06:06:16] 2025-12-03 11:05:36,315 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 06:06:16] 2025-12-03 11:05:36,315 | INFO     | pilot state: finished 
[2025-12-03 06:06:16] 2025-12-03 11:05:36,315 | INFO     | transexitcode: 0
[2025-12-03 06:06:16] 2025-12-03 11:05:36,315 | INFO     | exeerrorcode: 0
[2025-12-03 06:06:16] 2025-12-03 11:05:36,315 | INFO     | exeerrordiag: 
[2025-12-03 06:06:16] 2025-12-03 11:05:36,315 | INFO     | exitcode: 0
[2025-12-03 06:06:16] 2025-12-03 11:05:36,316 | INFO     | exitmsg: OK
[2025-12-03 06:06:16] 2025-12-03 11:05:36,316 | INFO     | cpuconsumptiontime: 298687 s
[2025-12-03 06:06:16] 2025-12-03 11:05:36,316 | INFO     | nevents: 1000
[2025-12-03 06:06:16] 2025-12-03 11:05:36,316 | INFO     | neventsw: 0
[2025-12-03 06:06:16] 2025-12-03 11:05:36,316 | INFO     | pid: 19597
[2025-12-03 06:06:16] 2025-12-03 11:05:36,316 | INFO     | pgrp: 19597
[2025-12-03 06:06:16] 2025-12-03 11:05:36,317 | INFO     | corecount: 12
[2025-12-03 06:06:16] 2025-12-03 11:05:36,317 | INFO     | event service: False
[2025-12-03 06:06:16] 2025-12-03 11:05:36,317 | INFO     | sizes: {0: 2283486, 1: 2284342, 6: 2284604, 12: 2284632, 26202: 2322037, 26206: 2331215, 26212: 2331405}
[2025-12-03 06:06:16] 2025-12-03 11:05:36,317 | INFO     | --------------------------------------------------
[2025-12-03 06:06:16] 2025-12-03 11:05:36,317 | INFO     | 
[2025-12-03 06:06:16] 2025-12-03 11:05:36,317 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-03 06:06:16] 2025-12-03 11:05:36,342 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 06:06:16] 2025-12-03 11:05:36,342 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 06:06:16] 2025-12-03 11:05:36,342 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 06:06:16] 2025-12-03 11:05:36,342 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 06:06:16] 2025-12-03 11:05:36,343 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 06:06:16] 2025-12-03 11:05:36,343 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 06:06:16] 2025-12-03 11:05:36,343 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 06:06:16] 2025-12-03 11:05:36,343 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 06:06:16] 2025-12-03 11:05:36,343 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 06:06:16] 2025-12-03 11:05:36,343 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 06:06:16] 2025-12-03 11:05:36,344 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 06:06:16] 2025-12-03 11:05:36,344 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 06:06:16] 2025-12-03 11:05:36,344 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 06:06:16] 2025-12-03 11:05:36,344 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 06:06:16] 2025-12-03 11:05:36,344 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 06:06:16] 2025-12-03 11:05:36,345 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 06:06:16] 2025-12-03 11:05:36,345 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 06:06:16] 2025-12-03 11:05:36,345 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 06:06:16] 2025-12-03 11:05:36,345 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 06:06:16] 2025-12-03 11:05:36,345 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 06:06:16] 2025-12-03 11:05:36,345 | INFO     | job 6895475922 has completed (purged errors)
[2025-12-03 06:06:16] 2025-12-03 11:05:36,346 | INFO     | overall cleanup function is called
[2025-12-03 06:06:16] 2025-12-03 11:05:37,363 | INFO     | --- collectZombieJob: --- 10, [19597]
[2025-12-03 06:06:16] 2025-12-03 11:05:37,363 | INFO     | zombie collector waiting for pid 19597
[2025-12-03 06:06:16] 2025-12-03 11:05:37,363 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 06:06:16] 2025-12-03 11:05:37,363 | INFO     | collected zombie processes
[2025-12-03 06:06:16] 2025-12-03 11:05:37,363 | INFO     | will attempt to kill all subprocesses of pid=19597
[2025-12-03 06:06:16] 2025-12-03 11:05:37,458 | INFO     | process IDs to be killed: [19597] (in reverse order)
[2025-12-03 06:06:16] 2025-12-03 11:05:37,511 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 06:06:16] 2025-12-03 11:05:37,512 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 06:06:16] 2025-12-03 11:05:37,515 | INFO     | did not find any defunct processes belonging to 19597
[2025-12-03 06:06:16] 2025-12-03 11:05:37,518 | INFO     | did not find any defunct processes belonging to 19597
[2025-12-03 06:06:16] 2025-12-03 11:05:37,521 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 06:06:16] 2025-12-03 11:05:37,521 | INFO     | ready for new job
[2025-12-03 06:06:16] 2025-12-03 11:05:37,521 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 06:06:16] 2025-12-03 11:05:37,523 | INFO     | ***************************************
[2025-12-03 06:06:16] 2025-12-03 11:05:37,523 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 06:06:16] 2025-12-03 11:05:37,523 | INFO     | ***************************************
[2025-12-03 06:06:16] 2025-12-03 11:05:37,523 | INFO     | 
[2025-12-03 06:06:16] 2025-12-03 11:05:37,524 | INFO     | architecture information:
[2025-12-03 06:06:16] 2025-12-03 11:05:37,525 | INFO     | executing command: cat /etc/os-release
[2025-12-03 06:06:16] 2025-12-03 11:05:37,539 | INFO     | cat /etc/os-release:
[2025-12-03 06:06:16] NAME="CentOS Linux"
[2025-12-03 06:06:16] VERSION="7 (Core)"
[2025-12-03 06:06:16] ID="centos"
[2025-12-03 06:06:16] ID_LIKE="rhel fedora"
[2025-12-03 06:06:16] VERSION_ID="7"
[2025-12-03 06:06:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 06:06:16] ANSI_COLOR="0;31"
[2025-12-03 06:06:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 06:06:16] HOME_URL="https://www.centos.org/"
[2025-12-03 06:06:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 06:06:16] 
[2025-12-03 06:06:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 06:06:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 06:06:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 06:06:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 06:06:16] 
[2025-12-03 06:06:16] 2025-12-03 11:05:37,540 | INFO     | ***************************************
[2025-12-03 06:06:16] 2025-12-03 11:05:38,043 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-03 06:06:16] 2025-12-03 11:05:38,059 | INFO     | sufficient remaining disk space (28247588864 B)
[2025-12-03 06:06:16] 2025-12-03 11:05:38,059 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 06:06:16] 2025-12-03 11:05:38,060 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 06:06:16] 2025-12-03 11:05:38,060 | INFO     | update_server=False
[2025-12-03 06:06:16] 2025-12-03 11:05:38,060 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 06:06:16] 2025-12-03 11:05:38,060 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 06:06:16] 2025-12-03 11:05:38,061 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 06:06:16] 2025-12-03 11:05:38,061 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 06:06:16] 2025-12-03 11:05:38,061 | INFO     | aborting loop
[2025-12-03 06:06:16] 2025-12-03 11:05:38,710 | INFO     | all data control threads have been joined
[2025-12-03 06:06:16] 2025-12-03 11:05:38,943 | INFO     | all payload control threads have been joined
[2025-12-03 06:06:16] 2025-12-03 11:05:39,023 | INFO     | all job control threads have been joined
[2025-12-03 06:06:16] 2025-12-03 11:05:39,066 | INFO     | [job] retrieve thread has finished
[2025-12-03 06:06:16] 2025-12-03 11:05:39,067 | INFO     | [job] queue monitor thread has finished
[2025-12-03 06:06:16] 2025-12-03 11:05:39,067 | INFO     | [job] job monitor thread has finished
[2025-12-03 06:06:16] 2025-12-03 11:05:39,220 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 06:06:16] 2025-12-03 11:05:39,583 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 06:06:16] 2025-12-03 11:05:39,715 | INFO     | [data] control thread has finished
[2025-12-03 06:06:16] 2025-12-03 11:05:39,732 | INFO     | [payload] failed_post thread has finished
[2025-12-03 06:06:16] 2025-12-03 11:05:39,871 | INFO     | [payload] validate_post thread has finished
[2025-12-03 06:06:16] 2025-12-03 11:05:39,948 | INFO     | [payload] control thread has finished
[2025-12-03 06:06:16] 2025-12-03 11:05:40,028 | INFO     | [job] control thread has finished
[2025-12-03 06:06:16] 2025-12-03 11:05:40,058 | INFO     | [job] validate thread has finished
[2025-12-03 06:06:16] 2025-12-03 11:05:40,061 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 06:06:16] 2025-12-03 11:05:40,066 | INFO     | [data] copytool_out thread has finished
[2025-12-03 06:06:16] 2025-12-03 11:05:40,069 | INFO     | [data] copytool_in thread has finished
[2025-12-03 06:06:16] 2025-12-03 11:05:40,471 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 06:06:16] 2025-12-03 11:05:44,067 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 06:06:16] 2025-12-03 11:05:48,751 | INFO     | job.realtimelogging is not enabled
[2025-12-03 06:06:16] 2025-12-03 11:05:49,756 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 06:06:16] 2025-12-03 11:06:08,568 | INFO     | PID=13235 has CPU usage=5.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-03 06:06:16] 2025-12-03 11:06:08,569 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 06:06:16] 2025-12-03 11:06:08,569 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 06:06:16] 2025-12-03 11:06:08,569 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 06:06:16] 2025-12-03 11:06:10,381 | INFO     | [monitor] cgroup control has ended
[2025-12-03 06:06:16] 2025-12-03 11:06:10,841 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139758522251072)>', '<ExcThread(monitor, started 139757472433920)>']
[2025-12-03 06:06:16] 2025-12-03 11:06:11,585 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 06:06:16] 2025-12-03 11:06:11,585 | INFO     | [monitor] control thread has ended
[2025-12-03 06:06:16] 2025-12-03 11:06:15,862 | INFO     | all workflow threads have been joined
[2025-12-03 06:06:16] 2025-12-03 11:06:15,862 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 06:06:16] 2025-12-03 11:06:15,862 | INFO     | traces error code: 0
[2025-12-03 06:06:16] 2025-12-03 11:06:15,863 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 06:06:16] 2025-12-03 11:06:15,962 [wrapper] ==== pilot stdout END ====
[2025-12-03 06:06:16] 2025-12-03 11:06:15,965 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 06:06:16] 2025-12-03 11:06:15,969 [wrapper] pilotpid: 13235
[2025-12-03 06:06:16] 2025-12-03 11:06:15,973 [wrapper] Pilot exit status: 0
[2025-12-03 06:06:16] 2025-12-03 11:06:15,987 [wrapper] pandaids: 6895475922 6895475922
[2025-12-03 06:06:16] 2025-12-03 11:06:16,029 [wrapper] cleanup supervisor_pilot 29848 13236
[2025-12-03 06:06:16] 2025-12-03 11:06:16,032 [wrapper] Test setup, not cleaning
[2025-12-03 06:06:16] 2025-12-03 11:06:16,036 [wrapper] apfmon messages muted
[2025-12-03 06:06:16] 2025-12-03 11:06:16,040 [wrapper] ==== wrapper stdout END ====
[2025-12-03 06:06:16] 2025-12-03 11:06:16,044 [wrapper] ==== wrapper stderr END ====
[2025-12-03 06:06:16]  *** Error codes and diagnostics ***
[2025-12-03 06:06:16]     "exeErrorCode": 0,
[2025-12-03 06:06:16]     "exeErrorDiag": "",
[2025-12-03 06:06:16]     "pilotErrorCode": 0,
[2025-12-03 06:06:16]     "pilotErrorDiag": "",
[2025-12-03 06:06:16]  *** Listing of results directory ***
[2025-12-03 06:06:16] total 1711828
[2025-12-03 06:06:16] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-12-03 06:06:16] -rw-r--r-- 1 boincer umatlas    576529 Nov 24 04:01 pilot3.tar.gz
[2025-12-03 06:06:16] -rwx------ 1 boincer umatlas     36292 Nov 24 04:16 runpilot2-wrapper.sh
[2025-12-03 06:06:16] -rw-r--r-- 1 boincer umatlas      5112 Nov 24 04:16 queuedata.json
[2025-12-03 06:06:16] -rw-r--r-- 1 boincer umatlas       100 Dec  2 15:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 06:06:16] -rwxr-xr-x 1 boincer umatlas      7986 Dec  2 15:54 run_atlas
[2025-12-03 06:06:16] -rw-r--r-- 1 boincer umatlas       105 Dec  2 15:54 job.xml
[2025-12-03 06:06:16] -rw-r--r-- 3 boincer umatlas 408463779 Dec  2 15:54 EVNT.47483658._001293.pool.root.1
[2025-12-03 06:06:16] -rw-r--r-- 3 boincer umatlas 408463779 Dec  2 15:54 ATLAS.root_0
[2025-12-03 06:06:16] -rw-r--r-- 2 boincer umatlas     15847 Dec  2 15:54 start_atlas.sh
[2025-12-03 06:06:16] drwxrwx--x 2 boincer umatlas      4096 Dec  2 15:54 shared
[2025-12-03 06:06:16] -rw-r--r-- 2 boincer umatlas    590103 Dec  2 15:54 input.tar.gz
[2025-12-03 06:06:16] -rw-r--r-- 1 boincer umatlas         0 Dec  2 15:54 boinc_lockfile
[2025-12-03 06:06:16] -rw-r--r-- 1 boincer umatlas      2785 Dec  2 22:48 pandaJob.out
[2025-12-03 06:06:16] -rw------- 1 boincer umatlas        57 Dec  2 22:48 setup.sh.local
[2025-12-03 06:06:16] -rw------- 1 boincer umatlas    989300 Dec  2 22:48 agis_schedconf.cvmfs.json
[2025-12-03 06:06:16] -rw-r--r-- 1 boincer umatlas       533 Dec  3 05:54 boinc_task_state.xml
[2025-12-03 06:06:16] -rw-r--r-- 1 boincer umatlas      5955 Dec  3 06:03 init_data.xml
[2025-12-03 06:06:16] -rw------- 1 boincer umatlas 920374827 Dec  3 06:04 HITS.47556149._002794.pool.root.1
[2025-12-03 06:06:16] -rw------- 1 boincer umatlas      1063 Dec  3 06:05 memory_monitor_summary.json
[2025-12-03 06:06:16] -rw------- 1 boincer umatlas   1516240 Dec  3 06:05 agis_ddmendpoints.agis.ALL.json
[2025-12-03 06:06:16] -rw------- 1 boincer umatlas   2177327 Dec  3 06:05 log.47556149._002794.job.log.tgz.1
[2025-12-03 06:06:16] -rw------- 1 boincer umatlas      8668 Dec  3 06:05 heartbeat.json
[2025-12-03 06:06:16] -rw-r--r-- 1 boincer umatlas      8192 Dec  3 06:05 boinc_mmap_file
[2025-12-03 06:06:16] -rw-r--r-- 1 boincer umatlas        29 Dec  3 06:05 wrapper_checkpoint.txt
[2025-12-03 06:06:16] -rw------- 1 boincer umatlas        96 Dec  3 06:06 pilot_heartbeat.json
[2025-12-03 06:06:16] -rw------- 1 boincer umatlas      4818 Dec  3 06:06 pilotlog.txt
[2025-12-03 06:06:16] -rw------- 1 boincer umatlas   3668927 Dec  3 06:06 log.47556149._002794.job.log.1
[2025-12-03 06:06:16] -rw------- 1 boincer umatlas       353 Dec  3 06:06 output.list
[2025-12-03 06:06:16] -rw-r--r-- 1 boincer umatlas       620 Dec  3 06:06 runtime_log
[2025-12-03 06:06:16] -rw------- 1 boincer umatlas   5867520 Dec  3 06:06 result.tar.gz
[2025-12-03 06:06:16] -rw------- 1 boincer umatlas       795 Dec  3 06:06 sxQLDmmrhh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm8ZLKDmrol2Qm.diag
[2025-12-03 06:06:16] -rw-r--r-- 1 boincer umatlas      9430 Dec  3 06:06 runtime_log.err
[2025-12-03 06:06:16] -rw-r--r-- 1 boincer umatlas     23433 Dec  3 06:06 stderr.txt
[2025-12-03 06:06:16] HITS file was successfully produced:
[2025-12-03 06:06:16] -rw------- 1 boincer umatlas 920374827 Dec  3 06:04 shared/HITS.pool.root.1
[2025-12-03 06:06:16]  *** Contents of shared directory: ***
[2025-12-03 06:06:16] total 1304028
[2025-12-03 06:06:16] -rw-r--r-- 3 boincer umatlas 408463779 Dec  2 15:54 ATLAS.root_0
[2025-12-03 06:06:16] -rw-r--r-- 2 boincer umatlas     15847 Dec  2 15:54 start_atlas.sh
[2025-12-03 06:06:16] -rw-r--r-- 2 boincer umatlas    590103 Dec  2 15:54 input.tar.gz
[2025-12-03 06:06:16] -rw------- 1 boincer umatlas 920374827 Dec  3 06:04 HITS.pool.root.1
[2025-12-03 06:06:16] -rw------- 1 boincer umatlas   5867520 Dec  3 06:06 result.tar.gz
06:06:18 (9461): run_atlas exited; CPU time 291831.849851
06:06:18 (9461): called boinc_finish(0)

</stderr_txt>
]]>

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