Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:31:21 (242525): wrapper (7.7.26015): starting
16:31:21 (242525): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 16:31:21] Arguments: --nthreads 8
[2025-12-02 16:31:21] Threads: 8
[2025-12-02 16:31:21] Checking for CVMFS
[2025-12-02 16:31:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 16:31:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 16:31:22] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 16:31:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 16:31:23] 2.13.3.0 11235 37538 230472 153569 0 294 25525503 32935937 43205 16776704 0 314960415 99.590 311920956 32781 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-02 16:31:23] CVMFS is ok
[2025-12-02 16:31:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 16:31:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 16:31:23] Further information can be found at the LHC@home message board.
[2025-12-02 16:31:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 16:31:23] Checking for apptainer binary...
[2025-12-02 16:31:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 16:31:23] Running /usr/bin/apptainer --version
[2025-12-02 16:31:23] apptainer version 1.4.4-1.el9
[2025-12-02 16:31:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 16:31:23] c7-2-37.aglt2.org
[2025-12-02 16:31:23] apptainer works
[2025-12-02 16:31:23] Set ATHENA_PROC_NUMBER=8
[2025-12-02 16:31:23] Set ATHENA_CORE_NUMBER=8
[2025-12-02 16:31:23] Starting ATLAS job with PandaID=6895328615
[2025-12-02 16:31:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 08:22:51]  *** The last 200 lines of the pilot log: ***
[2025-12-03 08:22:51] 2025-12-03 13:22:18,120 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 08:22:51] 2025-12-03 13:22:18,131 | INFO     | fitting pss+swap vs Time
[2025-12-03 08:22:51] 2025-12-03 13:22:18,132 | INFO     | sum of square deviations: 252644596541.40585
[2025-12-03 08:22:51] 2025-12-03 13:22:18,147 | INFO     | sum of deviations: 1886621226238.2507
[2025-12-03 08:22:51] 2025-12-03 13:22:18,147 | INFO     | mean x: 1764739655.6391864
[2025-12-03 08:22:51] 2025-12-03 13:22:18,147 | INFO     | mean y: 2893366.698072805
[2025-12-03 08:22:51] 2025-12-03 13:22:18,147 | INFO     | intersect: -13175283957.065178
[2025-12-03 08:22:51] 2025-12-03 13:22:18,148 | INFO     | chi2: 11.521536075313005
[2025-12-03 08:22:51] 2025-12-03 13:22:18,149 | INFO     | sum of square deviations: 248609059337.382
[2025-12-03 08:22:51] 2025-12-03 13:22:18,211 | INFO     | sum of deviations: 2209679426938.8096
[2025-12-03 08:22:51] 2025-12-03 13:22:18,211 | INFO     | mean x: 1764739503.1453176
[2025-12-03 08:22:51] 2025-12-03 13:22:18,211 | INFO     | mean y: 2905572.771797632
[2025-12-03 08:22:51] 2025-12-03 13:22:18,211 | INFO     | intersect: -15682398029.598082
[2025-12-03 08:22:51] 2025-12-03 13:22:18,212 | INFO     | chi2: 8.249640910995236
[2025-12-03 08:22:51] 2025-12-03 13:22:18,212 | INFO     | current chi2=8.249640910995236 (change=28.39808114933912 %)
[2025-12-03 08:22:51] 2025-12-03 13:22:18,213 | INFO     | sum of square deviations: 244616675578.08997
[2025-12-03 08:22:51] 2025-12-03 13:22:18,233 | INFO     | sum of deviations: 2421180848988.86
[2025-12-03 08:22:51] 2025-12-03 13:22:18,233 | INFO     | mean x: 1764739350.6504328
[2025-12-03 08:22:51] 2025-12-03 13:22:18,234 | INFO     | mean y: 2913638.3463203465
[2025-12-03 08:22:51] 2025-12-03 13:22:18,234 | INFO     | intersect: -17464223911.267937
[2025-12-03 08:22:51] 2025-12-03 13:22:18,234 | INFO     | chi2: 6.360008596718406
[2025-12-03 08:22:51] 2025-12-03 13:22:18,235 | INFO     | current chi2=6.360008596718406 (change=22.90563110157076 %)
[2025-12-03 08:22:51] 2025-12-03 13:22:18,235 | INFO     | right removable region: 923
[2025-12-03 08:22:51] 2025-12-03 13:22:18,235 | INFO     | sum of square deviations: 248608410297.382
[2025-12-03 08:22:51] 2025-12-03 13:22:18,252 | INFO     | sum of deviations: 1520673780126.1382
[2025-12-03 08:22:51] 2025-12-03 13:22:18,252 | INFO     | mean x: 1764739808.1453176
[2025-12-03 08:22:51] 2025-12-03 13:22:18,252 | INFO     | mean y: 2907191.502691066
[2025-12-03 08:22:51] 2025-12-03 13:22:18,252 | INFO     | intersect: -10791552866.310066
[2025-12-03 08:22:51] 2025-12-03 13:22:18,253 | INFO     | chi2: 7.577418557694817
[2025-12-03 08:22:51] 2025-12-03 13:22:18,253 | INFO     | current chi2=7.577418557694817 (change=34.23256666330438 %)
[2025-12-03 08:22:51] 2025-12-03 13:22:18,254 | INFO     | sum of square deviations: 244615490592.09
[2025-12-03 08:22:51] 2025-12-03 13:22:18,271 | INFO     | sum of deviations: 1265026006110.267
[2025-12-03 08:22:51] 2025-12-03 13:22:18,271 | INFO     | mean x: 1764739960.6504328
[2025-12-03 08:22:51] 2025-12-03 13:22:18,272 | INFO     | mean y: 2916943.951298701
[2025-12-03 08:22:51] 2025-12-03 13:22:18,272 | INFO     | intersect: -9123414094.370102
[2025-12-03 08:22:51] 2025-12-03 13:22:18,272 | INFO     | chi2: 5.454793247489753
[2025-12-03 08:22:51] 2025-12-03 13:22:18,273 | INFO     | current chi2=5.454793247489753 (change=28.012512362136217 %)
[2025-12-03 08:22:51] 2025-12-03 13:22:18,273 | INFO     | sum of square deviations: 240665886868.5764
[2025-12-03 08:22:51] 2025-12-03 13:22:18,290 | INFO     | sum of deviations: 1217018328817.5605
[2025-12-03 08:22:51] 2025-12-03 13:22:18,290 | INFO     | mean x: 1764740113.149075
[2025-12-03 08:22:51] 2025-12-03 13:22:18,290 | INFO     | mean y: 2918796.601741023
[2025-12-03 08:22:51] 2025-12-03 13:22:18,290 | INFO     | intersect: -8921158858.304266
[2025-12-03 08:22:51] 2025-12-03 13:22:18,291 | INFO     | chi2: 5.43512030407718
[2025-12-03 08:22:51] 2025-12-03 13:22:18,291 | INFO     | current chi2=5.43512030407718 (change=0.3606542451746668 %)
[2025-12-03 08:22:51] 2025-12-03 13:22:18,291 | INFO     | left removable region: 30
[2025-12-03 08:22:51] 2025-12-03 13:22:18,292 | INFO     | sum of square deviations: 220812736409.0751
[2025-12-03 08:22:51] 2025-12-03 13:22:18,307 | INFO     | sum of deviations: 1677426410785.4128
[2025-12-03 08:22:51] 2025-12-03 13:22:18,307 | INFO     | mean x: 1764740235.1455767
[2025-12-03 08:22:51] 2025-12-03 13:22:18,307 | INFO     | mean y: 2943395.712206047
[2025-12-03 08:22:51] 2025-12-03 13:22:18,307 | INFO     | intersect: -13403085290.625784
[2025-12-03 08:22:51] 2025-12-03 13:22:18,308 | INFO     | chi2: 0.1268480516550359
[2025-12-03 08:22:51] 2025-12-03 13:22:18,308 | INFO     | current memory leak: 7.60 B/s (using 893 data points, chi2=0.13)
[2025-12-03 08:22:51] 2025-12-03 13:22:18,309 | INFO     | could have reported an average CPU frequency of 3341 MHz (35 samples)
[2025-12-03 08:22:51] 2025-12-03 13:22:18,309 | INFO     | ..............................
[2025-12-03 08:22:51] 2025-12-03 13:22:18,309 | INFO     | . Timing measurements:
[2025-12-03 08:22:51] 2025-12-03 13:22:18,309 | INFO     | . get job = 0 s
[2025-12-03 08:22:51] 2025-12-03 13:22:18,309 | INFO     | . initial setup = 3 s
[2025-12-03 08:22:51] 2025-12-03 13:22:18,310 | INFO     | . payload setup = 21 s
[2025-12-03 08:22:51] 2025-12-03 13:22:18,310 | INFO     | . stage-in = 0 s
[2025-12-03 08:22:51] 2025-12-03 13:22:18,310 | INFO     | . payload execution = 56931 s
[2025-12-03 08:22:51] 2025-12-03 13:22:18,310 | INFO     | . stage-out = 3 s
[2025-12-03 08:22:51] 2025-12-03 13:22:18,310 | INFO     | . log creation = 0 s
[2025-12-03 08:22:51] 2025-12-03 13:22:18,310 | INFO     | ..............................
[2025-12-03 08:22:51] 2025-12-03 13:22:18,387 | INFO     | 
[2025-12-03 08:22:51] 2025-12-03 13:22:18,387 | INFO     | job summary report
[2025-12-03 08:22:51] 2025-12-03 13:22:18,387 | INFO     | --------------------------------------------------
[2025-12-03 08:22:51] 2025-12-03 13:22:18,387 | INFO     | PanDA job id: 6895328615
[2025-12-03 08:22:51] 2025-12-03 13:22:18,387 | INFO     | task id: 47556137
[2025-12-03 08:22:51] 2025-12-03 13:22:18,387 | INFO     | errors: (none)
[2025-12-03 08:22:51] 2025-12-03 13:22:18,387 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 08:22:51] 2025-12-03 13:22:18,387 | INFO     | pilot state: finished 
[2025-12-03 08:22:51] 2025-12-03 13:22:18,387 | INFO     | transexitcode: 0
[2025-12-03 08:22:51] 2025-12-03 13:22:18,387 | INFO     | exeerrorcode: 0
[2025-12-03 08:22:51] 2025-12-03 13:22:18,388 | INFO     | exeerrordiag: 
[2025-12-03 08:22:51] 2025-12-03 13:22:18,388 | INFO     | exitcode: 0
[2025-12-03 08:22:51] 2025-12-03 13:22:18,388 | INFO     | exitmsg: OK
[2025-12-03 08:22:51] 2025-12-03 13:22:18,388 | INFO     | cpuconsumptiontime: 188808 s
[2025-12-03 08:22:51] 2025-12-03 13:22:18,388 | INFO     | nevents: 1000
[2025-12-03 08:22:51] 2025-12-03 13:22:18,388 | INFO     | neventsw: 0
[2025-12-03 08:22:51] 2025-12-03 13:22:18,388 | INFO     | pid: 287382
[2025-12-03 08:22:51] 2025-12-03 13:22:18,388 | INFO     | pgrp: 287382
[2025-12-03 08:22:51] 2025-12-03 13:22:18,388 | INFO     | corecount: 8
[2025-12-03 08:22:51] 2025-12-03 13:22:18,388 | INFO     | event service: False
[2025-12-03 08:22:51] 2025-12-03 13:22:18,388 | INFO     | sizes: {0: 2284089, 1: 2284288, 12: 2284288, 14: 2284578, 23: 2284606, 56956: 2335531, 56957: 2335658, 56961: 2344708, 56964: 2344764, 56978: 2345010}
[2025-12-03 08:22:51] 2025-12-03 13:22:18,388 | INFO     | --------------------------------------------------
[2025-12-03 08:22:51] 2025-12-03 13:22:18,388 | INFO     | 
[2025-12-03 08:22:51] 2025-12-03 13:22:18,388 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-12-03 08:22:51] 2025-12-03 13:22:18,408 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 08:22:51] 2025-12-03 13:22:18,408 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 08:22:51] 2025-12-03 13:22:18,408 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 08:22:51] 2025-12-03 13:22:18,408 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 08:22:51] 2025-12-03 13:22:18,408 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 08:22:51] 2025-12-03 13:22:18,408 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 08:22:51] 2025-12-03 13:22:18,408 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 08:22:51] 2025-12-03 13:22:18,409 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 08:22:51] 2025-12-03 13:22:18,409 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 08:22:51] 2025-12-03 13:22:18,409 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 08:22:51] 2025-12-03 13:22:18,409 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 08:22:51] 2025-12-03 13:22:18,409 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 08:22:51] 2025-12-03 13:22:18,409 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 08:22:51] 2025-12-03 13:22:18,409 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 08:22:51] 2025-12-03 13:22:18,409 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 08:22:51] 2025-12-03 13:22:18,409 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 08:22:51] 2025-12-03 13:22:18,409 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 08:22:51] 2025-12-03 13:22:18,409 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 08:22:51] 2025-12-03 13:22:18,409 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 08:22:51] 2025-12-03 13:22:18,409 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 08:22:51] 2025-12-03 13:22:18,409 | INFO     | job 6895328615 has completed (purged errors)
[2025-12-03 08:22:51] 2025-12-03 13:22:18,410 | INFO     | overall cleanup function is called
[2025-12-03 08:22:51] 2025-12-03 13:22:19,426 | INFO     | --- collectZombieJob: --- 10, [287382]
[2025-12-03 08:22:51] 2025-12-03 13:22:19,426 | INFO     | zombie collector waiting for pid 287382
[2025-12-03 08:22:51] 2025-12-03 13:22:19,426 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 08:22:51] 2025-12-03 13:22:19,426 | INFO     | collected zombie processes
[2025-12-03 08:22:51] 2025-12-03 13:22:19,426 | INFO     | will attempt to kill all subprocesses of pid=287382
[2025-12-03 08:22:51] 2025-12-03 13:22:20,177 | INFO     | process IDs to be killed: [287382] (in reverse order)
[2025-12-03 08:22:51] 2025-12-03 13:22:20,444 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 08:22:51] 2025-12-03 13:22:20,444 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 08:22:51] 2025-12-03 13:22:20,508 | INFO     | did not find any defunct processes belonging to 287382
[2025-12-03 08:22:51] 2025-12-03 13:22:20,539 | INFO     | did not find any defunct processes belonging to 287382
[2025-12-03 08:22:51] 2025-12-03 13:22:20,541 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 08:22:51] 2025-12-03 13:22:20,542 | INFO     | ready for new job
[2025-12-03 08:22:51] 2025-12-03 13:22:20,542 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 08:22:51] 2025-12-03 13:22:20,546 | INFO     | ***************************************
[2025-12-03 08:22:51] 2025-12-03 13:22:20,547 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 08:22:51] 2025-12-03 13:22:20,547 | INFO     | ***************************************
[2025-12-03 08:22:51] 2025-12-03 13:22:20,547 | INFO     | 
[2025-12-03 08:22:51] 2025-12-03 13:22:20,551 | INFO     | architecture information:
[2025-12-03 08:22:51] 2025-12-03 13:22:20,552 | INFO     | executing command: cat /etc/os-release
[2025-12-03 08:22:51] 2025-12-03 13:22:20,576 | INFO     | cat /etc/os-release:
[2025-12-03 08:22:51] NAME="CentOS Linux"
[2025-12-03 08:22:51] VERSION="7 (Core)"
[2025-12-03 08:22:51] ID="centos"
[2025-12-03 08:22:51] ID_LIKE="rhel fedora"
[2025-12-03 08:22:51] VERSION_ID="7"
[2025-12-03 08:22:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 08:22:51] ANSI_COLOR="0;31"
[2025-12-03 08:22:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 08:22:51] HOME_URL="https://www.centos.org/"
[2025-12-03 08:22:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 08:22:51] 
[2025-12-03 08:22:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 08:22:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 08:22:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 08:22:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 08:22:51] 
[2025-12-03 08:22:51] 2025-12-03 13:22:20,576 | INFO     | ***************************************
[2025-12-03 08:22:51] 2025-12-03 13:22:21,080 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-12-03 08:22:51] 2025-12-03 13:22:21,184 | INFO     | sufficient remaining disk space (70401392640 B)
[2025-12-03 08:22:51] 2025-12-03 13:22:21,184 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 08:22:51] 2025-12-03 13:22:21,184 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 08:22:51] 2025-12-03 13:22:21,189 | INFO     | update_server=False
[2025-12-03 08:22:51] 2025-12-03 13:22:21,189 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 08:22:51] 2025-12-03 13:22:21,189 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 08:22:51] 2025-12-03 13:22:21,189 | INFO     | aborting loop
[2025-12-03 08:22:51] 2025-12-03 13:22:21,282 | INFO     | all payload control threads have been joined
[2025-12-03 08:22:51] 2025-12-03 13:22:21,400 | INFO     | all data control threads have been joined
[2025-12-03 08:22:51] 2025-12-03 13:22:21,636 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 08:22:51] 2025-12-03 13:22:21,640 | INFO     | all job control threads have been joined
[2025-12-03 08:22:51] 2025-12-03 13:22:22,206 | INFO     | [job] retrieve thread has finished
[2025-12-03 08:22:51] 2025-12-03 13:22:22,218 | INFO     | [job] job monitor thread has finished
[2025-12-03 08:22:51] 2025-12-03 13:22:22,225 | INFO     | [job] validate thread has finished
[2025-12-03 08:22:51] 2025-12-03 13:22:22,288 | INFO     | [payload] control thread has finished
[2025-12-03 08:22:51] 2025-12-03 13:22:22,406 | INFO     | [data] control thread has finished
[2025-12-03 08:22:51] 2025-12-03 13:22:22,646 | INFO     | [job] control thread has finished
[2025-12-03 08:22:51] 2025-12-03 13:22:22,834 | INFO     | [payload] failed_post thread has finished
[2025-12-03 08:22:51] 2025-12-03 13:22:22,868 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 08:22:51] 2025-12-03 13:22:22,976 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 08:22:51] 2025-12-03 13:22:23,131 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 08:22:51] 2025-12-03 13:22:23,176 | INFO     | [data] copytool_in thread has finished
[2025-12-03 08:22:51] 2025-12-03 13:22:23,405 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 08:22:51] 2025-12-03 13:22:23,462 | INFO     | [payload] validate_post thread has finished
[2025-12-03 08:22:51] 2025-12-03 13:22:23,465 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 08:22:51] 2025-12-03 13:22:23,643 | INFO     | [data] copytool_out thread has finished
[2025-12-03 08:22:51] 2025-12-03 13:22:24,411 | INFO     | [job] queue monitor thread has finished
[2025-12-03 08:22:51] 2025-12-03 13:22:27,472 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 08:22:51] 2025-12-03 13:22:31,272 | INFO     | job.realtimelogging is not enabled
[2025-12-03 08:22:51] 2025-12-03 13:22:32,278 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 08:22:51] 2025-12-03 13:22:43,965 | INFO     | [monitor] cgroup control has ended
[2025-12-03 08:22:51] 2025-12-03 13:22:44,972 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139643321812800)>', '<ExcThread(monitor, started 139642422662912)>']
[2025-12-03 08:22:51] 2025-12-03 13:22:50,003 | INFO     | all workflow threads have been joined
[2025-12-03 08:22:51] 2025-12-03 13:22:50,003 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 08:22:51] 2025-12-03 13:22:50,003 | INFO     | traces error code: 0
[2025-12-03 08:22:51] 2025-12-03 13:22:50,003 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 08:22:51] 2025-12-03 13:22:50,537 | INFO     | PID=261231 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-03 08:22:51] 2025-12-03 13:22:50,539 | INFO     | .. there are 57 such processes running
[2025-12-03 08:22:51] 2025-12-03 13:22:50,540 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 08:22:51] 2025-12-03 13:22:50,540 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 08:22:51] 2025-12-03 13:22:50,540 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 08:22:51] 2025-12-03 13:22:50,540 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 08:22:51] 2025-12-03 13:22:50,540 | INFO     | [monitor] control thread has ended
[2025-12-03 08:22:51] 2025-12-03 13:22:50,686 [wrapper] ==== pilot stdout END ====
[2025-12-03 08:22:51] 2025-12-03 13:22:50,688 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 08:22:51] 2025-12-03 13:22:50,690 [wrapper] pilotpid: 261231
[2025-12-03 08:22:51] 2025-12-03 13:22:50,692 [wrapper] Pilot exit status: 0
[2025-12-03 08:22:51] 2025-12-03 13:22:50,705 [wrapper] pandaids: 6895328615
[2025-12-03 08:22:51] 2025-12-03 13:22:50,931 [wrapper] cleanup supervisor_pilot 4057405 261232
[2025-12-03 08:22:51] 2025-12-03 13:22:50,945 [wrapper] Test setup, not cleaning
[2025-12-03 08:22:51] 2025-12-03 13:22:50,948 [wrapper] apfmon messages muted
[2025-12-03 08:22:51] 2025-12-03 13:22:50,951 [wrapper] ==== wrapper stdout END ====
[2025-12-03 08:22:51] 2025-12-03 13:22:50,953 [wrapper] ==== wrapper stderr END ====
[2025-12-03 08:22:51]  *** Error codes and diagnostics ***
[2025-12-03 08:22:51]     "exeErrorCode": 0,
[2025-12-03 08:22:51]     "exeErrorDiag": "",
[2025-12-03 08:22:51]     "pilotErrorCode": 0,
[2025-12-03 08:22:51]     "pilotErrorDiag": "",
[2025-12-03 08:22:51]  *** Listing of results directory ***
[2025-12-03 08:22:51] total 1323044
[2025-12-03 08:22:51] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 12:05 pilot3.tar.gz
[2025-12-03 08:22:51] -rwx------. 1 boincer umatlas     36292 Nov 21 12:27 runpilot2-wrapper.sh
[2025-12-03 08:22:51] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 12:27 queuedata.json
[2025-12-03 08:22:51] -rw-r--r--. 1 boincer umatlas       100 Dec  2 16:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 08:22:51] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  2 16:31 run_atlas
[2025-12-03 08:22:51] -rw-r--r--. 1 boincer umatlas       105 Dec  2 16:31 job.xml
[2025-12-03 08:22:51] -rw-r--r--. 2 boincer umatlas 410226460 Dec  2 16:31 EVNT.47483658._000082.pool.root.1
[2025-12-03 08:22:51] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 16:31 start_atlas.sh
[2025-12-03 08:22:51] drwxrwx--x. 2 boincer umatlas      4096 Dec  2 16:31 shared
[2025-12-03 08:22:51] -rw-r--r--. 2 boincer umatlas    590098 Dec  2 16:31 input.tar.gz
[2025-12-03 08:22:51] -rw-r--r--. 1 boincer umatlas         0 Dec  2 16:31 boinc_lockfile
[2025-12-03 08:22:51] -rw-r--r--. 1 boincer umatlas      2783 Dec  2 16:31 pandaJob.out
[2025-12-03 08:22:51] -rw-------. 1 boincer umatlas        57 Dec  2 16:31 setup.sh.local
[2025-12-03 08:22:51] -rw-------. 1 boincer umatlas    989224 Dec  2 16:32 agis_schedconf.cvmfs.json
[2025-12-03 08:22:51] drwx------. 5 boincer umatlas      4096 Dec  2 16:32 pilot3
[2025-12-03 08:22:51] -rw-r--r--. 1 boincer umatlas       533 Dec  3 08:10 boinc_task_state.xml
[2025-12-03 08:22:51] -rw-r--r--. 1 boincer umatlas      6947 Dec  3 08:19 init_data.xml
[2025-12-03 08:22:51] -rw-------. 1 boincer umatlas 923104508 Dec  3 08:20 HITS.47556137._000813.pool.root.1
[2025-12-03 08:22:51] -rw-------. 1 boincer umatlas      1050 Dec  3 08:21 memory_monitor_summary.json
[2025-12-03 08:22:51] -rw-------. 1 boincer umatlas   1516240 Dec  3 08:21 agis_ddmendpoints.agis.ALL.json
[2025-12-03 08:22:51] -rw-------. 1 boincer umatlas   2051005 Dec  3 08:22 log.47556137._000813.job.log.tgz.1
[2025-12-03 08:22:51] -rw-------. 1 boincer umatlas      8590 Dec  3 08:22 heartbeat.json
[2025-12-03 08:22:51] -rw-r--r--. 1 boincer umatlas        29 Dec  3 08:22 wrapper_checkpoint.txt
[2025-12-03 08:22:51] -rw-r--r--. 1 boincer umatlas      8192 Dec  3 08:22 boinc_mmap_file
[2025-12-03 08:22:51] -rw-------. 1 boincer umatlas       822 Dec  3 08:22 pilotlog.txt
[2025-12-03 08:22:51] -rw-------. 1 boincer umatlas        95 Dec  3 08:22 pilot_heartbeat.json
[2025-12-03 08:22:51] -rw-------. 1 boincer umatlas   6723500 Dec  3 08:22 log.47556137._000813.job.log.1
[2025-12-03 08:22:51] -rw-------. 1 boincer umatlas       353 Dec  3 08:22 output.list
[2025-12-03 08:22:51] -rw-r--r--. 1 boincer umatlas       620 Dec  3 08:22 runtime_log
[2025-12-03 08:22:51] -rw-------. 1 boincer umatlas   8796160 Dec  3 08:22 result.tar.gz
[2025-12-03 08:22:51] -rw-r--r--. 1 boincer umatlas      9338 Dec  3 08:22 runtime_log.err
[2025-12-03 08:22:51] -rw-------. 1 boincer umatlas       659 Dec  3 08:22 4u8LDmY6jg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmUkHKDmYYzAHm.diag
[2025-12-03 08:22:51] -rw-r--r--. 1 boincer umatlas     21127 Dec  3 08:22 stderr.txt
[2025-12-03 08:22:51] HITS file was successfully produced:
[2025-12-03 08:22:51] -rw-------. 1 boincer umatlas 923104508 Dec  3 08:20 shared/HITS.pool.root.1
[2025-12-03 08:22:51]  *** Contents of shared directory: ***
[2025-12-03 08:22:51] total 1311280
[2025-12-03 08:22:51] -rw-r--r--. 2 boincer umatlas 410226460 Dec  2 16:31 ATLAS.root_0
[2025-12-03 08:22:51] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 16:31 start_atlas.sh
[2025-12-03 08:22:51] -rw-r--r--. 2 boincer umatlas    590098 Dec  2 16:31 input.tar.gz
[2025-12-03 08:22:51] -rw-------. 1 boincer umatlas 923104508 Dec  3 08:20 HITS.pool.root.1
[2025-12-03 08:22:51] -rw-------. 1 boincer umatlas   8796160 Dec  3 08:22 result.tar.gz
08:22:52 (242525): run_atlas exited; CPU time 190293.742441
08:22:52 (242525): called boinc_finish(0)

</stderr_txt>
]]>

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