Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
02:06:27 (16703): wrapper (7.7.26015): starting
02:06:27 (16703): wrapper: running run_atlas (--nthreads 8)
[2025-12-03 02:06:27] Arguments: --nthreads 8
[2025-12-03 02:06:27] Threads: 8
[2025-12-03 02:06:27] Checking for CVMFS
[2025-12-03 02:06:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 02:06:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 02:06:28] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 02:06:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 02:06:28] 2.11.0.0 4587 74729 89932 153575 3 128 3100176 4096000 1027 130560 2 4992472 99.467 4610195 472 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-03 02:06:28] CVMFS is ok
[2025-12-03 02:06:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-03 02:06:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-03 02:06:28] Further information can be found at the LHC@home message board.
[2025-12-03 02:06:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 02:06:28] Checking for apptainer binary...
[2025-12-03 02:06:28] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-03 02:06:28] apptainer is not installed, using version from CVMFS
[2025-12-03 02:06:28] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 02:06:28] WARNING: Environment variable TMPDIR already has value [/tmp/job_10946191/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node173
[2025-12-03 02:06:28] apptainer works
[2025-12-03 02:06:28] Set ATHENA_PROC_NUMBER=8
[2025-12-03 02:06:28] Set ATHENA_CORE_NUMBER=8
[2025-12-03 02:06:28] Starting ATLAS job with PandaID=6900935784
[2025-12-03 02:06:28] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10946191/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 06:35:05]  *** The last 200 lines of the pilot log: ***
[2025-12-03 06:35:05] 2025-12-03 05:34:16,434 | INFO     | monitor loop #1172: job 0:6900935784 is in state 'finished'
[2025-12-03 06:35:05] 2025-12-03 05:34:16,434 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 06:35:05] 2025-12-03 05:34:16,833 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 06:35:05] 2025-12-03 05:34:16,837 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2365.248953125
[2025-12-03 06:35:05] 2025-12-03 05:34:16,842 | INFO     | using path: /tmp/job_10946191/atlas/pilot/slots/0/PanDA_Pilot-6900935784/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 06:35:05] 2025-12-03 05:34:16,842 | INFO     | extracted standard info from prmon json
[2025-12-03 06:35:05] 2025-12-03 05:34:16,842 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 06:35:05] 2025-12-03 05:34:16,842 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 06:35:05] 2025-12-03 05:34:16,845 | INFO     | fitting pss+swap vs Time
[2025-12-03 06:35:05] 2025-12-03 05:34:16,845 | INFO     | sum of square deviations: 5640782972.0
[2025-12-03 06:35:05] 2025-12-03 05:34:16,846 | INFO     | sum of deviations: 317299368024.00006
[2025-12-03 06:35:05] 2025-12-03 05:34:16,846 | INFO     | mean x: 1764732002.0
[2025-12-03 06:35:05] 2025-12-03 05:34:16,846 | INFO     | mean y: 2978936.7680608365
[2025-12-03 06:35:05] 2025-12-03 05:34:16,846 | INFO     | intersect: -99264862379.91225
[2025-12-03 06:35:05] 2025-12-03 05:34:16,846 | INFO     | chi2: 4.632098344081698
[2025-12-03 06:35:05] 2025-12-03 05:34:16,846 | INFO     | sum of square deviations: 5325139844.5
[2025-12-03 06:35:05] 2025-12-03 05:34:16,847 | INFO     | sum of deviations: 347826881952.00006
[2025-12-03 06:35:05] 2025-12-03 05:34:16,847 | INFO     | mean x: 1764731849.5
[2025-12-03 06:35:05] 2025-12-03 05:34:16,847 | INFO     | mean y: 2993423.3178294576
[2025-12-03 06:35:05] 2025-12-03 05:34:16,847 | INFO     | intersect: -115265561885.50629
[2025-12-03 06:35:05] 2025-12-03 05:34:16,848 | INFO     | chi2: 3.2609742240825383
[2025-12-03 06:35:05] 2025-12-03 05:34:16,848 | INFO     | current chi2=3.2609742240825383 (change=29.600496754370653 %)
[2025-12-03 06:35:05] 2025-12-03 05:34:16,848 | INFO     | sum of square deviations: 5021496942.0
[2025-12-03 06:35:05] 2025-12-03 05:34:16,849 | INFO     | sum of deviations: 311977891443.0
[2025-12-03 06:35:05] 2025-12-03 05:34:16,849 | INFO     | mean x: 1764731697.0
[2025-12-03 06:35:05] 2025-12-03 05:34:16,849 | INFO     | mean y: 2975431.0553359683
[2025-12-03 06:35:05] 2025-12-03 05:34:16,849 | INFO     | intersect: -109637094084.43202
[2025-12-03 06:35:05] 2025-12-03 05:34:16,849 | INFO     | chi2: 3.159099670772068
[2025-12-03 06:35:05] 2025-12-03 05:34:16,849 | INFO     | current chi2=3.159099670772068 (change=3.1240527005126 %)
[2025-12-03 06:35:05] 2025-12-03 05:34:16,849 | INFO     | right removable region: 252
[2025-12-03 06:35:05] 2025-12-03 05:34:16,849 | INFO     | sum of square deviations: 5325139844.5
[2025-12-03 06:35:05] 2025-12-03 05:34:16,850 | INFO     | sum of deviations: 231856017275.99997
[2025-12-03 06:35:05] 2025-12-03 05:34:16,850 | INFO     | mean x: 1764732154.5
[2025-12-03 06:35:05] 2025-12-03 05:34:16,850 | INFO     | mean y: 3020070.11627907
[2025-12-03 06:35:05] 2025-12-03 05:34:16,850 | INFO     | intersect: -76833228526.03355
[2025-12-03 06:35:05] 2025-12-03 05:34:16,851 | INFO     | chi2: 1.872372965237803
[2025-12-03 06:35:05] 2025-12-03 05:34:16,851 | INFO     | current chi2=1.872372965237803 (change=59.578298512809404 %)
[2025-12-03 06:35:05] 2025-12-03 05:34:16,851 | INFO     | sum of square deviations: 5021496942.0
[2025-12-03 06:35:05] 2025-12-03 05:34:16,852 | INFO     | sum of deviations: 213619871587.99997
[2025-12-03 06:35:05] 2025-12-03 05:34:16,852 | INFO     | mean x: 1764732307.0
[2025-12-03 06:35:05] 2025-12-03 05:34:16,852 | INFO     | mean y: 3029219.932806324
[2025-12-03 06:35:05] 2025-12-03 05:34:16,852 | INFO     | intersect: -75070577945.97891
[2025-12-03 06:35:05] 2025-12-03 05:34:16,852 | INFO     | chi2: 1.8620655323772222
[2025-12-03 06:35:05] 2025-12-03 05:34:16,852 | INFO     | current chi2=1.8620655323772222 (change=0.5505010514436514 %)
[2025-12-03 06:35:05] 2025-12-03 05:34:16,852 | INFO     | left removable region: 20
[2025-12-03 06:35:05] 2025-12-03 05:34:16,852 | INFO     | sum of square deviations: 3871990738.0
[2025-12-03 06:35:05] 2025-12-03 05:34:16,853 | INFO     | sum of deviations: 180695451201.5
[2025-12-03 06:35:05] 2025-12-03 05:34:16,853 | INFO     | mean x: 1764732276.5
[2025-12-03 06:35:05] 2025-12-03 05:34:16,853 | INFO     | mean y: 3039881.3060344825
[2025-12-03 06:35:05] 2025-12-03 05:34:16,853 | INFO     | intersect: -82352295275.49458
[2025-12-03 06:35:05] 2025-12-03 05:34:16,853 | INFO     | chi2: 0.3073080662206899
[2025-12-03 06:35:05] 2025-12-03 05:34:16,853 | INFO     | current memory leak: 46.67 B/s (using 232 data points, chi2=0.31)
[2025-12-03 06:35:05] 2025-12-03 05:34:16,853 | INFO     | could have reported an average CPU frequency of 2612 MHz (12 samples)
[2025-12-03 06:35:05] 2025-12-03 05:34:16,853 | INFO     | ..............................
[2025-12-03 06:35:05] 2025-12-03 05:34:16,854 | INFO     | . Timing measurements:
[2025-12-03 06:35:05] 2025-12-03 05:34:16,854 | INFO     | . get job = 0 s
[2025-12-03 06:35:05] 2025-12-03 05:34:16,854 | INFO     | . initial setup = 1 s
[2025-12-03 06:35:05] 2025-12-03 05:34:16,854 | INFO     | . payload setup = 2 s
[2025-12-03 06:35:05] 2025-12-03 05:34:16,854 | INFO     | . stage-in = 0 s
[2025-12-03 06:35:05] 2025-12-03 05:34:16,854 | INFO     | . payload execution = 16039 s
[2025-12-03 06:35:05] 2025-12-03 05:34:16,854 | INFO     | . stage-out = 1 s
[2025-12-03 06:35:05] 2025-12-03 05:34:16,854 | INFO     | . log creation = 0 s
[2025-12-03 06:35:05] 2025-12-03 05:34:16,854 | INFO     | ..............................
[2025-12-03 06:35:05] 2025-12-03 05:34:17,123 | INFO     | 
[2025-12-03 06:35:05] 2025-12-03 05:34:17,123 | INFO     | job summary report
[2025-12-03 06:35:05] 2025-12-03 05:34:17,123 | INFO     | --------------------------------------------------
[2025-12-03 06:35:05] 2025-12-03 05:34:17,123 | INFO     | PanDA job id: 6900935784
[2025-12-03 06:35:05] 2025-12-03 05:34:17,123 | INFO     | task id: 47556185
[2025-12-03 06:35:05] 2025-12-03 05:34:17,123 | INFO     | errors: (none)
[2025-12-03 06:35:05] 2025-12-03 05:34:17,123 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 06:35:05] 2025-12-03 05:34:17,123 | INFO     | pilot state: finished 
[2025-12-03 06:35:05] 2025-12-03 05:34:17,123 | INFO     | transexitcode: 0
[2025-12-03 06:35:05] 2025-12-03 05:34:17,123 | INFO     | exeerrorcode: 0
[2025-12-03 06:35:05] 2025-12-03 05:34:17,123 | INFO     | exeerrordiag: 
[2025-12-03 06:35:05] 2025-12-03 05:34:17,123 | INFO     | exitcode: 0
[2025-12-03 06:35:05] 2025-12-03 05:34:17,123 | INFO     | exitmsg: OK
[2025-12-03 06:35:05] 2025-12-03 05:34:17,123 | INFO     | cpuconsumptiontime: 121334 s
[2025-12-03 06:35:05] 2025-12-03 05:34:17,123 | INFO     | nevents: 1000
[2025-12-03 06:35:05] 2025-12-03 05:34:17,123 | INFO     | neventsw: 0
[2025-12-03 06:35:05] 2025-12-03 05:34:17,123 | INFO     | pid: 29825
[2025-12-03 06:35:05] 2025-12-03 05:34:17,123 | INFO     | pgrp: 29825
[2025-12-03 06:35:05] 2025-12-03 05:34:17,123 | INFO     | corecount: 8
[2025-12-03 06:35:05] 2025-12-03 05:34:17,123 | INFO     | event service: False
[2025-12-03 06:35:05] 2025-12-03 05:34:17,123 | INFO     | sizes: {0: 2284443, 2: 2284705, 11: 2284733, 16044: 2316942, 16047: 2326022, 16050: 2326212}
[2025-12-03 06:35:05] 2025-12-03 05:34:17,123 | INFO     | --------------------------------------------------
[2025-12-03 06:35:05] 2025-12-03 05:34:17,123 | INFO     | 
[2025-12-03 06:35:05] 2025-12-03 05:34:17,123 | INFO     | executing command: ls -lF /tmp/job_10946191/atlas/pilot/slots/0
[2025-12-03 06:35:05] 2025-12-03 05:34:17,133 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 06:35:05] 2025-12-03 05:34:17,133 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 06:35:05] 2025-12-03 05:34:17,133 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 06:35:05] 2025-12-03 05:34:17,133 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 06:35:05] 2025-12-03 05:34:17,133 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 06:35:05] 2025-12-03 05:34:17,133 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 06:35:05] 2025-12-03 05:34:17,133 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 06:35:05] 2025-12-03 05:34:17,133 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 06:35:05] 2025-12-03 05:34:17,133 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 06:35:05] 2025-12-03 05:34:17,133 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 06:35:05] 2025-12-03 05:34:17,133 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 06:35:05] 2025-12-03 05:34:17,133 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 06:35:05] 2025-12-03 05:34:17,133 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 06:35:05] 2025-12-03 05:34:17,133 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 06:35:05] 2025-12-03 05:34:17,134 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 06:35:05] 2025-12-03 05:34:17,134 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 06:35:05] 2025-12-03 05:34:17,134 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 06:35:05] 2025-12-03 05:34:17,134 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 06:35:05] 2025-12-03 05:34:17,134 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 06:35:05] 2025-12-03 05:34:17,134 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 06:35:05] 2025-12-03 05:34:17,134 | INFO     | job 6900935784 has completed (purged errors)
[2025-12-03 06:35:05] 2025-12-03 05:34:17,134 | INFO     | overall cleanup function is called
[2025-12-03 06:35:05] 2025-12-03 05:34:18,141 | INFO     | --- collectZombieJob: --- 10, [29825]
[2025-12-03 06:35:05] 2025-12-03 05:34:18,141 | INFO     | zombie collector waiting for pid 29825
[2025-12-03 06:35:05] 2025-12-03 05:34:18,141 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 06:35:05] 2025-12-03 05:34:18,141 | INFO     | collected zombie processes
[2025-12-03 06:35:05] 2025-12-03 05:34:18,141 | INFO     | will attempt to kill all subprocesses of pid=29825
[2025-12-03 06:35:05] 2025-12-03 05:34:18,228 | INFO     | process IDs to be killed: [29825] (in reverse order)
[2025-12-03 06:35:05] 2025-12-03 05:34:18,258 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 06:35:05] 2025-12-03 05:34:18,258 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 06:35:05] 2025-12-03 05:34:18,261 | INFO     | did not find any defunct processes belonging to 29825
[2025-12-03 06:35:05] 2025-12-03 05:34:18,264 | INFO     | did not find any defunct processes belonging to 29825
[2025-12-03 06:35:05] 2025-12-03 05:34:18,265 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 06:35:05] 2025-12-03 05:34:18,265 | INFO     | ready for new job
[2025-12-03 06:35:05] 2025-12-03 05:34:18,265 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 06:35:05] 2025-12-03 05:34:18,266 | INFO     | ***************************************
[2025-12-03 06:35:05] 2025-12-03 05:34:18,266 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 06:35:05] 2025-12-03 05:34:18,266 | INFO     | ***************************************
[2025-12-03 06:35:05] 2025-12-03 05:34:18,266 | INFO     | 
[2025-12-03 06:35:05] 2025-12-03 05:34:18,280 | INFO     | architecture information:
[2025-12-03 06:35:05] 2025-12-03 05:34:18,280 | INFO     | executing command: cat /etc/os-release
[2025-12-03 06:35:05] 2025-12-03 05:34:18,286 | INFO     | cat /etc/os-release:
[2025-12-03 06:35:05] NAME="CentOS Linux"
[2025-12-03 06:35:05] VERSION="7 (Core)"
[2025-12-03 06:35:05] ID="centos"
[2025-12-03 06:35:05] ID_LIKE="rhel fedora"
[2025-12-03 06:35:05] VERSION_ID="7"
[2025-12-03 06:35:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 06:35:05] ANSI_COLOR="0;31"
[2025-12-03 06:35:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 06:35:05] HOME_URL="https://www.centos.org/"
[2025-12-03 06:35:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 06:35:05] 
[2025-12-03 06:35:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 06:35:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 06:35:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 06:35:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 06:35:05] 
[2025-12-03 06:35:05] 2025-12-03 05:34:18,286 | INFO     | ***************************************
[2025-12-03 06:35:05] 2025-12-03 05:34:18,789 | INFO     | executing command: df -mP /tmp/job_10946191/atlas/pilot/slots/0
[2025-12-03 06:35:05] 2025-12-03 05:34:18,795 | INFO     | sufficient remaining disk space (226206154752 B)
[2025-12-03 06:35:05] 2025-12-03 05:34:18,795 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 06:35:05] 2025-12-03 05:34:18,795 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 06:35:05] 2025-12-03 05:34:18,795 | INFO     | update_server=False
[2025-12-03 06:35:05] 2025-12-03 05:34:18,795 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 06:35:05] 2025-12-03 05:34:18,795 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 06:35:05] 2025-12-03 05:34:18,937 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-03 06:35:05] 2025-12-03 05:34:18,937 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-03 06:35:05] 2025-12-03 05:34:18,937 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 06:35:05] 2025-12-03 05:34:18,937 | INFO     | will abort loop
[2025-12-03 06:35:05] 2025-12-03 05:34:19,343 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 06:35:05] 2025-12-03 05:34:19,474 | INFO     | all data control threads have been joined
[2025-12-03 06:35:05] 2025-12-03 05:34:19,510 | INFO     | all job control threads have been joined
[2025-12-03 06:35:05] 2025-12-03 05:34:19,800 | INFO     | [job] retrieve thread has finished
[2025-12-03 06:35:05] 2025-12-03 05:34:19,801 | INFO     | [job] queue monitor thread has finished
[2025-12-03 06:35:05] 2025-12-03 05:34:19,888 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 06:35:05] 2025-12-03 05:34:19,893 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 06:35:05] 2025-12-03 05:34:19,942 | INFO     | [job] job monitor thread has finished
[2025-12-03 06:35:05] 2025-12-03 05:34:19,970 | INFO     | all payload control threads have been joined
[2025-12-03 06:35:05] 2025-12-03 05:34:20,018 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 06:35:05] 2025-12-03 05:34:20,093 | INFO     | [payload] validate_post thread has finished
[2025-12-03 06:35:05] 2025-12-03 05:34:20,195 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 06:35:05] 2025-12-03 05:34:20,480 | INFO     | [data] control thread has finished
[2025-12-03 06:35:05] 2025-12-03 05:34:20,516 | INFO     | [job] control thread has finished
[2025-12-03 06:35:05] 2025-12-03 05:34:20,599 | INFO     | [payload] failed_post thread has finished
[2025-12-03 06:35:05] 2025-12-03 05:34:20,661 | INFO     | [data] copytool_in thread has finished
[2025-12-03 06:35:05] 2025-12-03 05:34:20,958 | INFO     | [job] validate thread has finished
[2025-12-03 06:35:05] 2025-12-03 05:34:20,975 | INFO     | [payload] control thread has finished
[2025-12-03 06:35:05] 2025-12-03 05:34:21,047 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 06:35:05] 2025-12-03 05:34:21,348 | INFO     | [data] copytool_out thread has finished
[2025-12-03 06:35:05] 2025-12-03 05:34:23,893 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 06:35:05] 2025-12-03 05:34:49,007 | INFO     | PID=21551 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-03 06:35:05] 2025-12-03 05:34:49,007 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 06:35:05] 2025-12-03 05:34:49,007 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 06:35:05] 2025-12-03 05:34:49,007 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 06:35:05] 2025-12-03 05:34:59,830 | INFO     | [monitor] cgroup control has ended
[2025-12-03 06:35:05] 2025-12-03 05:35:00,397 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456065021696)>']
[2025-12-03 06:35:05] 2025-12-03 05:35:01,067 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 06:35:05] 2025-12-03 05:35:01,067 | INFO     | [monitor] control thread has ended
[2025-12-03 06:35:05] 2025-12-03 05:35:05,422 | INFO     | all workflow threads have been joined
[2025-12-03 06:35:05] 2025-12-03 05:35:05,422 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 06:35:05] 2025-12-03 05:35:05,422 | INFO     | traces error code: 0
[2025-12-03 06:35:05] 2025-12-03 05:35:05,422 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 06:35:05] 2025-12-03 05:35:05,475 [wrapper] ==== pilot stdout END ====
[2025-12-03 06:35:05] 2025-12-03 05:35:05,477 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 06:35:05] 2025-12-03 05:35:05,478 [wrapper] pilotpid: 21551
[2025-12-03 06:35:05] 2025-12-03 05:35:05,479 [wrapper] Pilot exit status: 0
[2025-12-03 06:35:05] 2025-12-03 05:35:05,484 [wrapper] pandaids: 6900935784
[2025-12-03 06:35:05] 2025-12-03 05:35:05,506 [wrapper] cleanup supervisor_pilot  7647 21552
[2025-12-03 06:35:05] 2025-12-03 05:35:05,507 [wrapper] Test setup, not cleaning
[2025-12-03 06:35:05] 2025-12-03 05:35:05,508 [wrapper] apfmon messages muted
[2025-12-03 06:35:05] 2025-12-03 05:35:05,509 [wrapper] ==== wrapper stdout END ====
[2025-12-03 06:35:05] 2025-12-03 05:35:05,510 [wrapper] ==== wrapper stderr END ====
[2025-12-03 06:35:05]  *** Error codes and diagnostics ***
[2025-12-03 06:35:05]     "exeErrorCode": 0,
[2025-12-03 06:35:05]     "exeErrorDiag": "",
[2025-12-03 06:35:05]     "pilotErrorCode": 0,
[2025-12-03 06:35:05]     "pilotErrorDiag": "",
[2025-12-03 06:35:05]  *** Listing of results directory ***
[2025-12-03 06:35:05] total 1307980
[2025-12-03 06:35:05] -rw------- 1 mf493845 unix-user    576529 Nov 28 01:58 pilot3.tar.gz
[2025-12-03 06:35:05] -rwx------ 1 mf493845 unix-user     36292 Nov 28 02:02 runpilot2-wrapper.sh
[2025-12-03 06:35:05] -rw------- 1 mf493845 unix-user      5112 Nov 28 02:05 queuedata.json
[2025-12-03 06:35:05] -rw------- 1 mf493845 unix-user       100 Dec  3 00:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 06:35:05] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  3 00:21 run_atlas
[2025-12-03 06:35:05] -rw------- 1 mf493845 unix-user       105 Dec  3 00:21 job.xml
[2025-12-03 06:35:05] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 02:06 start_atlas.sh
[2025-12-03 06:35:05] drwxrwx--x 2 mf493845 unix-user       100 Dec  3 02:06 shared
[2025-12-03 06:35:05] -rw-r--r-- 2 mf493845 unix-user    590112 Dec  3 02:06 input.tar.gz
[2025-12-03 06:35:05] -rw------- 1 mf493845 unix-user      6392 Dec  3 02:06 init_data.xml
[2025-12-03 06:35:05] -rw-r--r-- 2 mf493845 unix-user 410462477 Dec  3 02:06 EVNT.47483658._004473.pool.root.1
[2025-12-03 06:35:05] -rw------- 1 mf493845 unix-user         0 Dec  3 02:06 boinc_setup_complete
[2025-12-03 06:35:05] -rw------- 1 mf493845 unix-user      8192 Dec  3 02:06 boinc_mmap_file
[2025-12-03 06:35:05] -rw------- 1 mf493845 unix-user         0 Dec  3 02:06 boinc_lockfile
[2025-12-03 06:35:05] -rw------- 1 mf493845 unix-user      2788 Dec  3 02:06 pandaJob.out
[2025-12-03 06:35:05] -rw------- 1 mf493845 unix-user    989284 Dec  3 02:06 agis_schedconf.cvmfs.json
[2025-12-03 06:35:05] drwx------ 5 mf493845 unix-user       440 Dec  3 02:06 pilot3
[2025-12-03 06:35:05] -rw------- 1 mf493845 unix-user 917235532 Dec  3 06:33 HITS.47556185._002366.pool.root.1
[2025-12-03 06:35:05] -rw------- 1 mf493845 unix-user      1029 Dec  3 06:34 memory_monitor_summary.json
[2025-12-03 06:35:05] -rw------- 1 mf493845 unix-user        95 Dec  3 06:34 pilot_heartbeat.json
[2025-12-03 06:35:05] -rw------- 1 mf493845 unix-user   1516240 Dec  3 06:34 agis_ddmendpoints.agis.ALL.json
[2025-12-03 06:35:05] -rw------- 1 mf493845 unix-user   1570777 Dec  3 06:34 log.47556185._002366.job.log.tgz.1
[2025-12-03 06:35:05] -rw------- 1 mf493845 unix-user      8574 Dec  3 06:34 heartbeat.json
[2025-12-03 06:35:05] -rw------- 1 mf493845 unix-user      4946 Dec  3 06:35 pilotlog.txt
[2025-12-03 06:35:05] -rw------- 1 mf493845 unix-user   2324352 Dec  3 06:35 log.47556185._002366.job.log.1
[2025-12-03 06:35:05] -rw------- 1 mf493845 unix-user       353 Dec  3 06:35 output.list
[2025-12-03 06:35:05] -rw------- 1 mf493845 unix-user       620 Dec  3 06:35 runtime_log
[2025-12-03 06:35:05] -rw------- 1 mf493845 unix-user   3911680 Dec  3 06:35 result.tar.gz
[2025-12-03 06:35:05] -rw------- 1 mf493845 unix-user       651 Dec  3 06:35 ShwKDmY31i8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmkLOKDm1Ot4bn.diag
[2025-12-03 06:35:05] -rw------- 1 mf493845 unix-user      9221 Dec  3 06:35 runtime_log.err
[2025-12-03 06:35:05] -rw------- 1 mf493845 unix-user     21704 Dec  3 06:35 stderr.txt
[2025-12-03 06:35:05] HITS file was successfully produced:
[2025-12-03 06:35:05] -rw------- 1 mf493845 unix-user 917235532 Dec  3 06:33 shared/HITS.pool.root.1
[2025-12-03 06:35:05]  *** Contents of shared directory: ***
[2025-12-03 06:35:05] total 1301000
[2025-12-03 06:35:05] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 02:06 start_atlas.sh
[2025-12-03 06:35:05] -rw-r--r-- 2 mf493845 unix-user    590112 Dec  3 02:06 input.tar.gz
[2025-12-03 06:35:05] -rw-r--r-- 2 mf493845 unix-user 410462477 Dec  3 02:06 ATLAS.root_0
[2025-12-03 06:35:05] -rw------- 1 mf493845 unix-user 917235532 Dec  3 06:33 HITS.pool.root.1
[2025-12-03 06:35:05] -rw------- 1 mf493845 unix-user   3911680 Dec  3 06:35 result.tar.gz
06:35:07 (16703): run_atlas exited; CPU time 121481.945313
06:35:07 (16703): called boinc_finish(0)

</stderr_txt>
]]>

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