Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
01:15:30 (12138): wrapper (7.7.26015): starting
01:15:30 (12138): wrapper: running run_atlas (--nthreads 8)
[2025-12-03 01:15:30] Arguments: --nthreads 8
[2025-12-03 01:15:30] Threads: 8
[2025-12-03 01:15:30] Checking for CVMFS
[2025-12-03 01:15:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 01:15:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 01:15:30] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 01:15:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 01:15:30] 2.11.0.0 4165 74680 85776 153575 2 57 3199352 4096001 2749 130560 2 5187999 99.277 5439362 513 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-03 01:15:30] CVMFS is ok
[2025-12-03 01:15:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-03 01:15:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-03 01:15:30] Further information can be found at the LHC@home message board.
[2025-12-03 01:15:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 01:15:30] Checking for apptainer binary...
[2025-12-03 01:15:30] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-03 01:15:30] apptainer is not installed, using version from CVMFS
[2025-12-03 01:15:30] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 01:15:31] WARNING: Environment variable TMPDIR already has value [/tmp/job_10946021/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node088
[2025-12-03 01:15:31] apptainer works
[2025-12-03 01:15:31] Set ATHENA_PROC_NUMBER=8
[2025-12-03 01:15:31] Set ATHENA_CORE_NUMBER=8
[2025-12-03 01:15:31] Starting ATLAS job with PandaID=6900219079
[2025-12-03 01:15:31] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10946021/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 05:47:30]  *** The last 200 lines of the pilot log: ***
[2025-12-03 05:47:30] 2025-12-03 04:46:57,513 | INFO     | executing command: lscpu
[2025-12-03 05:47:30] 2025-12-03 04:46:57,543 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-03 05:47:30] 2025-12-03 04:46:58,551 | INFO     | PID=16885 has CPU usage=7.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-03 05:47:30] 2025-12-03 04:46:59,195 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 05:47:30] 2025-12-03 04:46:59,199 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2379.9574375
[2025-12-03 05:47:30] 2025-12-03 04:46:59,204 | INFO     | using path: /tmp/job_10946021/atlas/pilot/slots/0/PanDA_Pilot-6900219079/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 05:47:30] 2025-12-03 04:46:59,204 | INFO     | extracted standard info from prmon json
[2025-12-03 05:47:30] 2025-12-03 04:46:59,205 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 05:47:30] 2025-12-03 04:46:59,205 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 05:47:30] 2025-12-03 04:46:59,207 | INFO     | fitting pss+swap vs Time
[2025-12-03 05:47:30] 2025-12-03 04:46:59,207 | INFO     | sum of square deviations: 5902093918.0
[2025-12-03 05:47:30] 2025-12-03 04:46:59,208 | INFO     | sum of deviations: 602692680009.0001
[2025-12-03 05:47:30] 2025-12-03 04:46:59,208 | INFO     | mean x: 1764729079.0
[2025-12-03 05:47:30] 2025-12-03 04:46:59,208 | INFO     | mean y: 3186186.179775281
[2025-12-03 05:47:30] 2025-12-03 04:46:59,208 | INFO     | intersect: -180202231228.24445
[2025-12-03 05:47:30] 2025-12-03 04:46:59,208 | INFO     | chi2: 6.2138716655771615
[2025-12-03 05:47:30] 2025-12-03 04:46:59,209 | INFO     | sum of square deviations: 5576683165.5
[2025-12-03 05:47:30] 2025-12-03 04:46:59,210 | INFO     | sum of deviations: 648904884237.5
[2025-12-03 05:47:30] 2025-12-03 04:46:59,210 | INFO     | mean x: 1764728926.5
[2025-12-03 05:47:30] 2025-12-03 04:46:59,210 | INFO     | mean y: 3207560.881679389
[2025-12-03 05:47:30] 2025-12-03 04:46:59,210 | INFO     | intersect: -205341293063.68945
[2025-12-03 05:47:30] 2025-12-03 04:46:59,210 | INFO     | chi2: 4.484608019006512
[2025-12-03 05:47:30] 2025-12-03 04:46:59,210 | INFO     | current chi2=4.484608019006512 (change=27.829085305224616 %)
[2025-12-03 05:47:30] 2025-12-03 04:46:59,210 | INFO     | sum of square deviations: 5263458688.0
[2025-12-03 05:47:30] 2025-12-03 04:46:59,211 | INFO     | sum of deviations: 602040487040.9999
[2025-12-03 05:47:30] 2025-12-03 04:46:59,211 | INFO     | mean x: 1764728774.0
[2025-12-03 05:47:30] 2025-12-03 04:46:59,211 | INFO     | mean y: 3184757.6770428014
[2025-12-03 05:47:30] 2025-12-03 04:46:59,211 | INFO     | intersect: -201848531684.29813
[2025-12-03 05:47:30] 2025-12-03 04:46:59,211 | INFO     | chi2: 4.428419365506095
[2025-12-03 05:47:30] 2025-12-03 04:46:59,211 | INFO     | current chi2=4.428419365506095 (change=1.2529222902487842 %)
[2025-12-03 05:47:30] 2025-12-03 04:46:59,211 | INFO     | right removable region: 256
[2025-12-03 05:47:30] 2025-12-03 04:46:59,212 | INFO     | sum of square deviations: 5576683165.5
[2025-12-03 05:47:30] 2025-12-03 04:46:59,213 | INFO     | sum of deviations: 491916322854.00024
[2025-12-03 05:47:30] 2025-12-03 04:46:59,213 | INFO     | mean x: 1764729231.5
[2025-12-03 05:47:30] 2025-12-03 04:46:59,213 | INFO     | mean y: 3238044.3587786257
[2025-12-03 05:47:30] 2025-12-03 04:46:59,213 | INFO     | intersect: -155662610028.7248
[2025-12-03 05:47:30] 2025-12-03 04:46:59,213 | INFO     | chi2: 2.68606822676539
[2025-12-03 05:47:30] 2025-12-03 04:46:59,213 | INFO     | current chi2=2.68606822676539 (change=56.773033443137564 %)
[2025-12-03 05:47:30] 2025-12-03 04:46:59,213 | INFO     | sum of square deviations: 5263458688.0
[2025-12-03 05:47:30] 2025-12-03 04:46:59,214 | INFO     | sum of deviations: 461441854709.00006
[2025-12-03 05:47:30] 2025-12-03 04:46:59,214 | INFO     | mean x: 1764729384.0
[2025-12-03 05:47:30] 2025-12-03 04:46:59,214 | INFO     | mean y: 3252858.2568093385
[2025-12-03 05:47:30] 2025-12-03 04:46:59,214 | INFO     | intersect: -154708705244.30695
[2025-12-03 05:47:30] 2025-12-03 04:46:59,214 | INFO     | chi2: 2.671850511010272
[2025-12-03 05:47:30] 2025-12-03 04:46:59,214 | INFO     | current chi2=2.671850511010272 (change=0.5293132770584695 %)
[2025-12-03 05:47:30] 2025-12-03 04:46:59,214 | INFO     | left removable region: 20
[2025-12-03 05:47:30] 2025-12-03 04:46:59,215 | INFO     | sum of square deviations: 4075741535.0
[2025-12-03 05:47:30] 2025-12-03 04:46:59,215 | INFO     | sum of deviations: 417430100186.49994
[2025-12-03 05:47:30] 2025-12-03 04:46:59,215 | INFO     | mean x: 1764729353.5
[2025-12-03 05:47:30] 2025-12-03 04:46:59,216 | INFO     | mean y: 3273458.334745763
[2025-12-03 05:47:30] 2025-12-03 04:46:59,216 | INFO     | intersect: -180737125437.8289
[2025-12-03 05:47:30] 2025-12-03 04:46:59,216 | INFO     | chi2: 0.7374557686793209
[2025-12-03 05:47:30] 2025-12-03 04:46:59,216 | INFO     | current memory leak: 102.42 B/s (using 236 data points, chi2=0.74)
[2025-12-03 05:47:30] 2025-12-03 04:46:59,216 | INFO     | could have reported an average CPU frequency of 2771 MHz (12 samples)
[2025-12-03 05:47:30] 2025-12-03 04:46:59,216 | INFO     | ..............................
[2025-12-03 05:47:30] 2025-12-03 04:46:59,216 | INFO     | . Timing measurements:
[2025-12-03 05:47:30] 2025-12-03 04:46:59,216 | INFO     | . get job = 0 s
[2025-12-03 05:47:30] 2025-12-03 04:46:59,216 | INFO     | . initial setup = 1 s
[2025-12-03 05:47:30] 2025-12-03 04:46:59,216 | INFO     | . payload setup = 15 s
[2025-12-03 05:47:30] 2025-12-03 04:46:59,216 | INFO     | . stage-in = 0 s
[2025-12-03 05:47:30] 2025-12-03 04:46:59,216 | INFO     | . payload execution = 16244 s
[2025-12-03 05:47:30] 2025-12-03 04:46:59,216 | INFO     | . stage-out = 1 s
[2025-12-03 05:47:30] 2025-12-03 04:46:59,216 | INFO     | . log creation = 0 s
[2025-12-03 05:47:30] 2025-12-03 04:46:59,216 | INFO     | ..............................
[2025-12-03 05:47:30] 2025-12-03 04:46:59,265 | INFO     | 
[2025-12-03 05:47:30] 2025-12-03 04:46:59,265 | INFO     | job summary report
[2025-12-03 05:47:30] 2025-12-03 04:46:59,265 | INFO     | --------------------------------------------------
[2025-12-03 05:47:30] 2025-12-03 04:46:59,265 | INFO     | PanDA job id: 6900219079
[2025-12-03 05:47:30] 2025-12-03 04:46:59,265 | INFO     | task id: 47556185
[2025-12-03 05:47:30] 2025-12-03 04:46:59,265 | INFO     | errors: (none)
[2025-12-03 05:47:30] 2025-12-03 04:46:59,265 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 05:47:30] 2025-12-03 04:46:59,265 | INFO     | pilot state: finished 
[2025-12-03 05:47:30] 2025-12-03 04:46:59,265 | INFO     | transexitcode: 0
[2025-12-03 05:47:30] 2025-12-03 04:46:59,265 | INFO     | exeerrorcode: 0
[2025-12-03 05:47:30] 2025-12-03 04:46:59,265 | INFO     | exeerrordiag: 
[2025-12-03 05:47:30] 2025-12-03 04:46:59,265 | INFO     | exitcode: 0
[2025-12-03 05:47:30] 2025-12-03 04:46:59,265 | INFO     | exitmsg: OK
[2025-12-03 05:47:30] 2025-12-03 04:46:59,265 | INFO     | cpuconsumptiontime: 122020 s
[2025-12-03 05:47:30] 2025-12-03 04:46:59,265 | INFO     | nevents: 1000
[2025-12-03 05:47:30] 2025-12-03 04:46:59,265 | INFO     | neventsw: 0
[2025-12-03 05:47:30] 2025-12-03 04:46:59,265 | INFO     | pid: 25338
[2025-12-03 05:47:30] 2025-12-03 04:46:59,266 | INFO     | pgrp: 25338
[2025-12-03 05:47:30] 2025-12-03 04:46:59,266 | INFO     | corecount: 8
[2025-12-03 05:47:30] 2025-12-03 04:46:59,266 | INFO     | event service: False
[2025-12-03 05:47:30] 2025-12-03 04:46:59,266 | INFO     | sizes: {0: 2284442, 2: 2284704, 11: 2284732, 16263: 2316969, 16266: 2325993, 16268: 2326049, 16271: 2326423}
[2025-12-03 05:47:30] 2025-12-03 04:46:59,266 | INFO     | --------------------------------------------------
[2025-12-03 05:47:30] 2025-12-03 04:46:59,266 | INFO     | 
[2025-12-03 05:47:30] 2025-12-03 04:46:59,266 | INFO     | executing command: ls -lF /tmp/job_10946021/atlas/pilot/slots/0
[2025-12-03 05:47:30] 2025-12-03 04:46:59,275 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 05:47:30] 2025-12-03 04:46:59,275 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 05:47:30] 2025-12-03 04:46:59,275 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 05:47:30] 2025-12-03 04:46:59,275 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 05:47:30] 2025-12-03 04:46:59,275 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 05:47:30] 2025-12-03 04:46:59,275 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 05:47:30] 2025-12-03 04:46:59,275 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 05:47:30] 2025-12-03 04:46:59,275 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 05:47:30] 2025-12-03 04:46:59,275 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 05:47:30] 2025-12-03 04:46:59,275 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 05:47:30] 2025-12-03 04:46:59,275 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 05:47:30] 2025-12-03 04:46:59,275 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 05:47:30] 2025-12-03 04:46:59,275 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 05:47:30] 2025-12-03 04:46:59,275 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 05:47:30] 2025-12-03 04:46:59,275 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 05:47:30] 2025-12-03 04:46:59,275 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 05:47:30] 2025-12-03 04:46:59,275 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 05:47:30] 2025-12-03 04:46:59,276 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 05:47:30] 2025-12-03 04:46:59,276 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 05:47:30] 2025-12-03 04:46:59,276 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 05:47:30] 2025-12-03 04:46:59,276 | INFO     | job 6900219079 has completed (purged errors)
[2025-12-03 05:47:30] 2025-12-03 04:46:59,276 | INFO     | overall cleanup function is called
[2025-12-03 05:47:30] 2025-12-03 04:47:00,283 | INFO     | --- collectZombieJob: --- 10, [25338]
[2025-12-03 05:47:30] 2025-12-03 04:47:00,283 | INFO     | zombie collector waiting for pid 25338
[2025-12-03 05:47:30] 2025-12-03 04:47:00,283 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 05:47:30] 2025-12-03 04:47:00,283 | INFO     | collected zombie processes
[2025-12-03 05:47:30] 2025-12-03 04:47:00,283 | INFO     | will attempt to kill all subprocesses of pid=25338
[2025-12-03 05:47:30] 2025-12-03 04:47:00,371 | INFO     | process IDs to be killed: [25338] (in reverse order)
[2025-12-03 05:47:30] 2025-12-03 04:47:00,399 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 05:47:30] 2025-12-03 04:47:00,399 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 05:47:30] 2025-12-03 04:47:00,402 | INFO     | did not find any defunct processes belonging to 25338
[2025-12-03 05:47:30] 2025-12-03 04:47:00,405 | INFO     | did not find any defunct processes belonging to 25338
[2025-12-03 05:47:30] 2025-12-03 04:47:00,406 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 05:47:30] 2025-12-03 04:47:00,406 | INFO     | ready for new job
[2025-12-03 05:47:30] 2025-12-03 04:47:00,406 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 05:47:30] 2025-12-03 04:47:00,407 | INFO     | ***************************************
[2025-12-03 05:47:30] 2025-12-03 04:47:00,407 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 05:47:30] 2025-12-03 04:47:00,407 | INFO     | ***************************************
[2025-12-03 05:47:30] 2025-12-03 04:47:00,407 | INFO     | 
[2025-12-03 05:47:30] 2025-12-03 04:47:00,421 | INFO     | architecture information:
[2025-12-03 05:47:30] 2025-12-03 04:47:00,422 | INFO     | executing command: cat /etc/os-release
[2025-12-03 05:47:30] 2025-12-03 04:47:00,426 | INFO     | cat /etc/os-release:
[2025-12-03 05:47:30] NAME="CentOS Linux"
[2025-12-03 05:47:30] VERSION="7 (Core)"
[2025-12-03 05:47:30] ID="centos"
[2025-12-03 05:47:30] ID_LIKE="rhel fedora"
[2025-12-03 05:47:30] VERSION_ID="7"
[2025-12-03 05:47:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 05:47:30] ANSI_COLOR="0;31"
[2025-12-03 05:47:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 05:47:30] HOME_URL="https://www.centos.org/"
[2025-12-03 05:47:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 05:47:30] 
[2025-12-03 05:47:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 05:47:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 05:47:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 05:47:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 05:47:30] 
[2025-12-03 05:47:30] 2025-12-03 04:47:00,427 | INFO     | ***************************************
[2025-12-03 05:47:30] 2025-12-03 04:47:00,929 | INFO     | executing command: df -mP /tmp/job_10946021/atlas/pilot/slots/0
[2025-12-03 05:47:30] 2025-12-03 04:47:00,934 | INFO     | sufficient remaining disk space (226092908544 B)
[2025-12-03 05:47:30] 2025-12-03 04:47:00,934 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 05:47:30] 2025-12-03 04:47:00,934 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 05:47:30] 2025-12-03 04:47:00,934 | INFO     | update_server=False
[2025-12-03 05:47:30] 2025-12-03 04:47:00,934 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 05:47:30] 2025-12-03 04:47:00,934 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 05:47:30] 2025-12-03 04:47:00,934 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 05:47:30] 2025-12-03 04:47:00,934 | INFO     | aborting loop
[2025-12-03 05:47:30] 2025-12-03 04:47:01,447 | INFO     | all data control threads have been joined
[2025-12-03 05:47:30] 2025-12-03 04:47:01,561 | INFO     | all job control threads have been joined
[2025-12-03 05:47:30] 2025-12-03 04:47:01,939 | INFO     | [job] retrieve thread has finished
[2025-12-03 05:47:30] 2025-12-03 04:47:01,939 | INFO     | [job] queue monitor thread has finished
[2025-12-03 05:47:30] 2025-12-03 04:47:01,939 | INFO     | [job] job monitor thread has finished
[2025-12-03 05:47:30] 2025-12-03 04:47:02,046 | INFO     | [data] copytool_in thread has finished
[2025-12-03 05:47:30] 2025-12-03 04:47:02,119 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 05:47:30] 2025-12-03 04:47:02,178 | INFO     | all payload control threads have been joined
[2025-12-03 05:47:30] 2025-12-03 04:47:02,371 | INFO     | [payload] validate_post thread has finished
[2025-12-03 05:47:30] 2025-12-03 04:47:02,381 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 05:47:30] 2025-12-03 04:47:02,452 | INFO     | [data] control thread has finished
[2025-12-03 05:47:30] 2025-12-03 04:47:02,566 | INFO     | [job] control thread has finished
[2025-12-03 05:47:30] 2025-12-03 04:47:02,667 | INFO     | [monitor] cgroup control has ended
[2025-12-03 05:47:30] 2025-12-03 04:47:02,934 | INFO     | [job] validate thread has finished
[2025-12-03 05:47:30] 2025-12-03 04:47:03,014 | INFO     | [payload] failed_post thread has finished
[2025-12-03 05:47:30] 2025-12-03 04:47:03,131 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 05:47:30] 2025-12-03 04:47:03,184 | INFO     | [payload] control thread has finished
[2025-12-03 05:47:30] 2025-12-03 04:47:03,215 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 05:47:30] 2025-12-03 04:47:03,262 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 05:47:30] 2025-12-03 04:47:04,386 | INFO     | [data] copytool_out thread has finished
[2025-12-03 05:47:30] 2025-12-03 04:47:06,124 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 05:47:30] 2025-12-03 04:47:11,086 | INFO     | job.realtimelogging is not enabled
[2025-12-03 05:47:30] 2025-12-03 04:47:12,091 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 05:47:30] 2025-12-03 04:47:12,112 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456060819200)>']
[2025-12-03 05:47:30] 2025-12-03 04:47:17,137 | INFO     | all workflow threads have been joined
[2025-12-03 05:47:30] 2025-12-03 04:47:17,137 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 05:47:30] 2025-12-03 04:47:17,138 | INFO     | traces error code: 0
[2025-12-03 05:47:30] 2025-12-03 04:47:17,138 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 05:47:30] 2025-12-03 04:47:30,718 | INFO     | PID=16885 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-03 05:47:30] 2025-12-03 04:47:30,719 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 05:47:30] 2025-12-03 04:47:30,719 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 05:47:30] 2025-12-03 04:47:30,719 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 05:47:30] 2025-12-03 04:47:30,719 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 05:47:30] 2025-12-03 04:47:30,719 | INFO     | [monitor] control thread has ended
[2025-12-03 05:47:30] 2025-12-03 04:47:30,771 [wrapper] ==== pilot stdout END ====
[2025-12-03 05:47:30] 2025-12-03 04:47:30,772 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 05:47:30] 2025-12-03 04:47:30,774 [wrapper] pilotpid: 16885
[2025-12-03 05:47:30] 2025-12-03 04:47:30,775 [wrapper] Pilot exit status: 0
[2025-12-03 05:47:30] 2025-12-03 04:47:30,779 [wrapper] pandaids: 6900219079
[2025-12-03 05:47:30] 2025-12-03 04:47:30,800 [wrapper] cleanup supervisor_pilot 19550 16886
[2025-12-03 05:47:30] 2025-12-03 04:47:30,801 [wrapper] Test setup, not cleaning
[2025-12-03 05:47:30] 2025-12-03 04:47:30,802 [wrapper] apfmon messages muted
[2025-12-03 05:47:30] 2025-12-03 04:47:30,803 [wrapper] ==== wrapper stdout END ====
[2025-12-03 05:47:30] 2025-12-03 04:47:30,804 [wrapper] ==== wrapper stderr END ====
[2025-12-03 05:47:30]  *** Error codes and diagnostics ***
[2025-12-03 05:47:30]     "exeErrorCode": 0,
[2025-12-03 05:47:30]     "exeErrorDiag": "",
[2025-12-03 05:47:30]     "pilotErrorCode": 0,
[2025-12-03 05:47:30]     "pilotErrorDiag": "",
[2025-12-03 05:47:30]  *** Listing of results directory ***
[2025-12-03 05:47:30] total 1310492
[2025-12-03 05:47:30] -rw------- 1 mf493845 unix-user    576529 Nov 27 17:16 pilot3.tar.gz
[2025-12-03 05:47:30] -rwx------ 1 mf493845 unix-user     36292 Nov 27 17:19 runpilot2-wrapper.sh
[2025-12-03 05:47:30] -rw------- 1 mf493845 unix-user      5112 Nov 27 17:20 queuedata.json
[2025-12-03 05:47:30] -rw------- 1 mf493845 unix-user       100 Dec  2 23:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 05:47:30] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  2 23:31 run_atlas
[2025-12-03 05:47:30] -rw------- 1 mf493845 unix-user       105 Dec  2 23:31 job.xml
[2025-12-03 05:47:30] -rw-r--r-- 2 mf493845 unix-user 408025517 Dec  3 01:15 EVNT.47483658._004354.pool.root.1
[2025-12-03 05:47:30] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 01:15 start_atlas.sh
[2025-12-03 05:47:30] drwxrwx--x 2 mf493845 unix-user       100 Dec  3 01:15 shared
[2025-12-03 05:47:30] -rw-r--r-- 2 mf493845 unix-user    590108 Dec  3 01:15 input.tar.gz
[2025-12-03 05:47:30] -rw------- 1 mf493845 unix-user      6390 Dec  3 01:15 init_data.xml
[2025-12-03 05:47:30] -rw------- 1 mf493845 unix-user         0 Dec  3 01:15 boinc_setup_complete
[2025-12-03 05:47:30] -rw------- 1 mf493845 unix-user      8192 Dec  3 01:15 boinc_mmap_file
[2025-12-03 05:47:30] -rw------- 1 mf493845 unix-user         0 Dec  3 01:15 boinc_lockfile
[2025-12-03 05:47:30] -rw------- 1 mf493845 unix-user      2787 Dec  3 01:15 pandaJob.out
[2025-12-03 05:47:30] -rw------- 1 mf493845 unix-user    989284 Dec  3 01:15 agis_schedconf.cvmfs.json
[2025-12-03 05:47:30] drwx------ 5 mf493845 unix-user       440 Dec  3 01:15 pilot3
[2025-12-03 05:47:30] -rw------- 1 mf493845 unix-user 922214537 Dec  3 05:46 HITS.47556185._001175.pool.root.1
[2025-12-03 05:47:30] -rw------- 1 mf493845 unix-user      1031 Dec  3 05:46 memory_monitor_summary.json
[2025-12-03 05:47:30] -rw------- 1 mf493845 unix-user   1516240 Dec  3 05:46 agis_ddmendpoints.agis.ALL.json
[2025-12-03 05:47:30] -rw------- 1 mf493845 unix-user   1567809 Dec  3 05:46 log.47556185._001175.job.log.tgz.1
[2025-12-03 05:47:30] -rw------- 1 mf493845 unix-user      8588 Dec  3 05:46 heartbeat.json
[2025-12-03 05:47:30] -rw------- 1 mf493845 unix-user        95 Dec  3 05:47 pilot_heartbeat.json
[2025-12-03 05:47:30] -rw------- 1 mf493845 unix-user       745 Dec  3 05:47 pilotlog.txt
[2025-12-03 05:47:30] -rw------- 1 mf493845 unix-user   2341492 Dec  3 05:47 log.47556185._001175.job.log.1
[2025-12-03 05:47:30] -rw------- 1 mf493845 unix-user       353 Dec  3 05:47 output.list
[2025-12-03 05:47:30] -rw------- 1 mf493845 unix-user       620 Dec  3 05:47 runtime_log
[2025-12-03 05:47:30] -rw------- 1 mf493845 unix-user   3932160 Dec  3 05:47 result.tar.gz
[2025-12-03 05:47:30] -rw------- 1 mf493845 unix-user      9221 Dec  3 05:47 runtime_log.err
[2025-12-03 05:47:30] -rw------- 1 mf493845 unix-user       651 Dec  3 05:47 af8NDmXtti8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmN0NKDmfHjjOn.diag
[2025-12-03 05:47:30] -rw------- 1 mf493845 unix-user     21857 Dec  3 05:47 stderr.txt
[2025-12-03 05:47:30] HITS file was successfully produced:
[2025-12-03 05:47:30] -rw------- 1 mf493845 unix-user 922214537 Dec  3 05:46 shared/HITS.pool.root.1
[2025-12-03 05:47:30]  *** Contents of shared directory: ***
[2025-12-03 05:47:30] total 1303504
[2025-12-03 05:47:30] -rw-r--r-- 2 mf493845 unix-user 408025517 Dec  3 01:15 ATLAS.root_0
[2025-12-03 05:47:30] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 01:15 start_atlas.sh
[2025-12-03 05:47:30] -rw-r--r-- 2 mf493845 unix-user    590108 Dec  3 01:15 input.tar.gz
[2025-12-03 05:47:30] -rw------- 1 mf493845 unix-user 922214537 Dec  3 05:46 HITS.pool.root.1
[2025-12-03 05:47:30] -rw------- 1 mf493845 unix-user   3932160 Dec  3 05:47 result.tar.gz
05:47:32 (12138): run_atlas exited; CPU time 122183.115774
05:47:32 (12138): called boinc_finish(0)

</stderr_txt>
]]>

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