Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
01:02:28 (17271): wrapper (7.7.26015): starting
01:02:28 (17271): wrapper: running run_atlas (--nthreads 8)
[2025-12-03 01:02:28] Arguments: --nthreads 8
[2025-12-03 01:02:28] Threads: 8
[2025-12-03 01:02:28] Checking for CVMFS
[2025-12-03 01:02:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 01:02:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 01:02:28] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 01:02:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 01:02:30] 2.11.0.0 10277 75000 95092 153574 3 128 3361251 4096000 179 130560 2 8496929 99.679 4599343 461 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-03 01:02:30] CVMFS is ok
[2025-12-03 01:02:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-03 01:02:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-03 01:02:30] Further information can be found at the LHC@home message board.
[2025-12-03 01:02:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 01:02:30] Checking for apptainer binary...
[2025-12-03 01:02:30] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-03 01:02:30] apptainer is not installed, using version from CVMFS
[2025-12-03 01:02:30] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 01:02:30] WARNING: Environment variable TMPDIR already has value [/tmp/job_10945976/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node137
[2025-12-03 01:02:30] apptainer works
[2025-12-03 01:02:30] Set ATHENA_PROC_NUMBER=8
[2025-12-03 01:02:30] Set ATHENA_CORE_NUMBER=8
[2025-12-03 01:02:30] Starting ATLAS job with PandaID=6898762318
[2025-12-03 01:02:30] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10945976/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 05:38:29]  *** The last 200 lines of the pilot log: ***
[2025-12-03 05:38:29] 2025-12-03 04:37:54,739 | INFO     | job 6898762318 has finished - writing final server update
[2025-12-03 05:38:29] 2025-12-03 04:37:54,739 | INFO     | total number of processed events: 1000 (read)
[2025-12-03 05:38:29] 2025-12-03 04:37:54,739 | INFO     | executing command: lscpu
[2025-12-03 05:38:29] 2025-12-03 04:37:54,771 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-03 05:38:29] 2025-12-03 04:37:55,623 | INFO     | time since job start (16520s) is within the limit (172800.0s)
[2025-12-03 05:38:29] 2025-12-03 04:37:55,901 | INFO     | monitor loop #1213: job 0:6898762318 is in state 'finished'
[2025-12-03 05:38:29] 2025-12-03 04:37:55,901 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 05:38:29] 2025-12-03 04:37:56,546 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 05:38:29] 2025-12-03 04:37:56,562 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2707.333453125
[2025-12-03 05:38:29] 2025-12-03 04:37:56,568 | INFO     | using path: /tmp/job_10945976/atlas/pilot/slots/0/PanDA_Pilot-6898762318/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 05:38:29] 2025-12-03 04:37:56,568 | INFO     | extracted standard info from prmon json
[2025-12-03 05:38:29] 2025-12-03 04:37:56,568 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 05:38:29] 2025-12-03 04:37:56,568 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 05:38:29] 2025-12-03 04:37:56,571 | INFO     | fitting pss+swap vs Time
[2025-12-03 05:38:29] 2025-12-03 04:37:56,571 | INFO     | sum of square deviations: 6171352920.0
[2025-12-03 05:38:29] 2025-12-03 04:37:56,572 | INFO     | sum of deviations: 473798095412.00006
[2025-12-03 05:38:29] 2025-12-03 04:37:56,572 | INFO     | mean x: 1764728408.0
[2025-12-03 05:38:29] 2025-12-03 04:37:56,572 | INFO     | mean y: 3061399.992619926
[2025-12-03 05:38:29] 2025-12-03 04:37:56,572 | INFO     | intersect: -135481810307.82263
[2025-12-03 05:38:29] 2025-12-03 04:37:56,572 | INFO     | chi2: 5.402282605832419
[2025-12-03 05:38:29] 2025-12-03 04:37:56,572 | INFO     | sum of square deviations: 5836025702.5
[2025-12-03 05:38:29] 2025-12-03 04:37:56,573 | INFO     | sum of deviations: 481798572768.5002
[2025-12-03 05:38:29] 2025-12-03 04:37:56,573 | INFO     | mean x: 1764728255.5
[2025-12-03 05:38:29] 2025-12-03 04:37:56,573 | INFO     | mean y: 3064725.7781954887
[2025-12-03 05:38:29] 2025-12-03 04:37:56,573 | INFO     | intersect: -145685730726.22318
[2025-12-03 05:38:29] 2025-12-03 04:37:56,574 | INFO     | chi2: 4.102072457029662
[2025-12-03 05:38:29] 2025-12-03 04:37:56,574 | INFO     | current chi2=4.102072457029662 (change=24.067792147693698 %)
[2025-12-03 05:38:29] 2025-12-03 04:37:56,574 | INFO     | right removable region: 265
[2025-12-03 05:38:29] 2025-12-03 04:37:56,574 | INFO     | sum of square deviations: 5836025702.5
[2025-12-03 05:38:29] 2025-12-03 04:37:56,575 | INFO     | sum of deviations: 387190356351.00006
[2025-12-03 05:38:29] 2025-12-03 04:37:56,575 | INFO     | mean x: 1764728560.5
[2025-12-03 05:38:29] 2025-12-03 04:37:56,575 | INFO     | mean y: 3100642.796992481
[2025-12-03 05:38:29] 2025-12-03 04:37:56,575 | INFO     | intersect: -117077583205.13065
[2025-12-03 05:38:29] 2025-12-03 04:37:56,575 | INFO     | chi2: 2.924019430548645
[2025-12-03 05:38:29] 2025-12-03 04:37:56,575 | INFO     | current chi2=2.924019430548645 (change=45.87437118910048 %)
[2025-12-03 05:38:29] 2025-12-03 04:37:56,575 | INFO     | sum of square deviations: 5513070810.0
[2025-12-03 05:38:29] 2025-12-03 04:37:56,576 | INFO     | sum of deviations: 367675306195.99994
[2025-12-03 05:38:29] 2025-12-03 04:37:56,576 | INFO     | mean x: 1764728713.0
[2025-12-03 05:38:29] 2025-12-03 04:37:56,576 | INFO     | mean y: 3109842.019157088
[2025-12-03 05:38:29] 2025-12-03 04:37:56,576 | INFO     | intersect: -117689405321.80257
[2025-12-03 05:38:29] 2025-12-03 04:37:56,577 | INFO     | chi2: 2.917461310600621
[2025-12-03 05:38:29] 2025-12-03 04:37:56,577 | INFO     | current chi2=2.917461310600621 (change=0.2242844175215859 %)
[2025-12-03 05:38:29] 2025-12-03 04:37:56,577 | INFO     | left removable region: 20
[2025-12-03 05:38:29] 2025-12-03 04:37:56,577 | INFO     | sum of square deviations: 4560048290.0
[2025-12-03 05:38:29] 2025-12-03 04:37:56,578 | INFO     | sum of deviations: 333012353814.99994
[2025-12-03 05:38:29] 2025-12-03 04:37:56,578 | INFO     | mean x: 1764728835.0
[2025-12-03 05:38:29] 2025-12-03 04:37:56,578 | INFO     | mean y: 3125629.6897959183
[2025-12-03 05:38:29] 2025-12-03 04:37:56,578 | INFO     | intersect: -128871935732.55571
[2025-12-03 05:38:29] 2025-12-03 04:37:56,578 | INFO     | chi2: 1.4879294390712992
[2025-12-03 05:38:29] 2025-12-03 04:37:56,578 | INFO     | current memory leak: 73.03 B/s (using 245 data points, chi2=1.49)
[2025-12-03 05:38:29] 2025-12-03 04:37:56,578 | INFO     | could have reported an average CPU frequency of 2882 MHz (13 samples)
[2025-12-03 05:38:29] 2025-12-03 04:37:56,578 | INFO     | ..............................
[2025-12-03 05:38:29] 2025-12-03 04:37:56,578 | INFO     | . Timing measurements:
[2025-12-03 05:38:29] 2025-12-03 04:37:56,578 | INFO     | . get job = 0 s
[2025-12-03 05:38:29] 2025-12-03 04:37:56,578 | INFO     | . initial setup = 1 s
[2025-12-03 05:38:29] 2025-12-03 04:37:56,578 | INFO     | . payload setup = 2 s
[2025-12-03 05:38:29] 2025-12-03 04:37:56,578 | INFO     | . stage-in = 0 s
[2025-12-03 05:38:29] 2025-12-03 04:37:56,578 | INFO     | . payload execution = 16495 s
[2025-12-03 05:38:29] 2025-12-03 04:37:56,579 | INFO     | . stage-out = 1 s
[2025-12-03 05:38:29] 2025-12-03 04:37:56,579 | INFO     | . log creation = 0 s
[2025-12-03 05:38:29] 2025-12-03 04:37:56,579 | INFO     | ..............................
[2025-12-03 05:38:29] 2025-12-03 04:37:56,756 | INFO     | PID=21007 has CPU usage=7.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-03 05:38:29] 2025-12-03 04:37:56,757 | INFO     | .. there are 4 such processes running
[2025-12-03 05:38:29] 2025-12-03 04:37:56,970 | INFO     | 
[2025-12-03 05:38:29] 2025-12-03 04:37:56,970 | INFO     | job summary report
[2025-12-03 05:38:29] 2025-12-03 04:37:56,970 | INFO     | --------------------------------------------------
[2025-12-03 05:38:29] 2025-12-03 04:37:56,970 | INFO     | PanDA job id: 6898762318
[2025-12-03 05:38:29] 2025-12-03 04:37:56,970 | INFO     | task id: 47556161
[2025-12-03 05:38:29] 2025-12-03 04:37:56,970 | INFO     | errors: (none)
[2025-12-03 05:38:29] 2025-12-03 04:37:56,970 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 05:38:29] 2025-12-03 04:37:56,970 | INFO     | pilot state: finished 
[2025-12-03 05:38:29] 2025-12-03 04:37:56,970 | INFO     | transexitcode: 0
[2025-12-03 05:38:29] 2025-12-03 04:37:56,970 | INFO     | exeerrorcode: 0
[2025-12-03 05:38:29] 2025-12-03 04:37:56,970 | INFO     | exeerrordiag: 
[2025-12-03 05:38:29] 2025-12-03 04:37:56,970 | INFO     | exitcode: 0
[2025-12-03 05:38:29] 2025-12-03 04:37:56,971 | INFO     | exitmsg: OK
[2025-12-03 05:38:29] 2025-12-03 04:37:56,971 | INFO     | cpuconsumptiontime: 124910 s
[2025-12-03 05:38:29] 2025-12-03 04:37:56,971 | INFO     | nevents: 1000
[2025-12-03 05:38:29] 2025-12-03 04:37:56,971 | INFO     | neventsw: 0
[2025-12-03 05:38:29] 2025-12-03 04:37:56,971 | INFO     | pid: 27631
[2025-12-03 05:38:29] 2025-12-03 04:37:56,971 | INFO     | pgrp: 27631
[2025-12-03 05:38:29] 2025-12-03 04:37:56,971 | INFO     | corecount: 8
[2025-12-03 05:38:29] 2025-12-03 04:37:56,971 | INFO     | event service: False
[2025-12-03 05:38:29] 2025-12-03 04:37:56,971 | INFO     | sizes: {0: 2284441, 2: 2284703, 11: 2284731, 16501: 2317333, 16502: 2317332, 16504: 2326412, 16506: 2326596, 16508: 2326842}
[2025-12-03 05:38:29] 2025-12-03 04:37:56,971 | INFO     | --------------------------------------------------
[2025-12-03 05:38:29] 2025-12-03 04:37:56,971 | INFO     | 
[2025-12-03 05:38:29] 2025-12-03 04:37:56,971 | INFO     | executing command: ls -lF /tmp/job_10945976/atlas/pilot/slots/0
[2025-12-03 05:38:29] 2025-12-03 04:37:56,981 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 05:38:29] 2025-12-03 04:37:56,981 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 05:38:29] 2025-12-03 04:37:56,981 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 05:38:29] 2025-12-03 04:37:56,981 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 05:38:29] 2025-12-03 04:37:56,981 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 05:38:29] 2025-12-03 04:37:56,981 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 05:38:29] 2025-12-03 04:37:56,981 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 05:38:29] 2025-12-03 04:37:56,981 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 05:38:29] 2025-12-03 04:37:56,981 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 05:38:29] 2025-12-03 04:37:56,981 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 05:38:29] 2025-12-03 04:37:56,981 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 05:38:29] 2025-12-03 04:37:56,982 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 05:38:29] 2025-12-03 04:37:56,982 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 05:38:29] 2025-12-03 04:37:56,982 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 05:38:29] 2025-12-03 04:37:56,982 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 05:38:29] 2025-12-03 04:37:56,982 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 05:38:29] 2025-12-03 04:37:56,982 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 05:38:29] 2025-12-03 04:37:56,982 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 05:38:29] 2025-12-03 04:37:56,982 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 05:38:29] 2025-12-03 04:37:56,982 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 05:38:29] 2025-12-03 04:37:56,982 | INFO     | job 6898762318 has completed (purged errors)
[2025-12-03 05:38:29] 2025-12-03 04:37:56,982 | INFO     | overall cleanup function is called
[2025-12-03 05:38:29] 2025-12-03 04:37:57,989 | INFO     | --- collectZombieJob: --- 10, [27631]
[2025-12-03 05:38:29] 2025-12-03 04:37:57,989 | INFO     | zombie collector waiting for pid 27631
[2025-12-03 05:38:29] 2025-12-03 04:37:57,989 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 05:38:29] 2025-12-03 04:37:57,989 | INFO     | collected zombie processes
[2025-12-03 05:38:29] 2025-12-03 04:37:57,989 | INFO     | will attempt to kill all subprocesses of pid=27631
[2025-12-03 05:38:29] 2025-12-03 04:37:58,092 | INFO     | process IDs to be killed: [27631] (in reverse order)
[2025-12-03 05:38:29] 2025-12-03 04:37:58,132 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 05:38:29] 2025-12-03 04:37:58,132 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 05:38:29] 2025-12-03 04:37:58,135 | INFO     | did not find any defunct processes belonging to 27631
[2025-12-03 05:38:29] 2025-12-03 04:37:58,138 | INFO     | did not find any defunct processes belonging to 27631
[2025-12-03 05:38:29] 2025-12-03 04:37:58,139 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 05:38:29] 2025-12-03 04:37:58,139 | INFO     | ready for new job
[2025-12-03 05:38:29] 2025-12-03 04:37:58,139 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 05:38:29] 2025-12-03 04:37:58,140 | INFO     | ***************************************
[2025-12-03 05:38:29] 2025-12-03 04:37:58,140 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 05:38:29] 2025-12-03 04:37:58,140 | INFO     | ***************************************
[2025-12-03 05:38:29] 2025-12-03 04:37:58,140 | INFO     | 
[2025-12-03 05:38:29] 2025-12-03 04:37:58,154 | INFO     | architecture information:
[2025-12-03 05:38:29] 2025-12-03 04:37:58,154 | INFO     | executing command: cat /etc/os-release
[2025-12-03 05:38:29] 2025-12-03 04:37:58,161 | INFO     | cat /etc/os-release:
[2025-12-03 05:38:29] NAME="CentOS Linux"
[2025-12-03 05:38:29] VERSION="7 (Core)"
[2025-12-03 05:38:29] ID="centos"
[2025-12-03 05:38:29] ID_LIKE="rhel fedora"
[2025-12-03 05:38:29] VERSION_ID="7"
[2025-12-03 05:38:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 05:38:29] ANSI_COLOR="0;31"
[2025-12-03 05:38:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 05:38:29] HOME_URL="https://www.centos.org/"
[2025-12-03 05:38:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 05:38:29] 
[2025-12-03 05:38:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 05:38:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 05:38:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 05:38:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 05:38:29] 
[2025-12-03 05:38:29] 2025-12-03 04:37:58,162 | INFO     | ***************************************
[2025-12-03 05:38:29] 2025-12-03 04:37:58,664 | INFO     | executing command: df -mP /tmp/job_10945976/atlas/pilot/slots/0
[2025-12-03 05:38:29] 2025-12-03 04:37:58,670 | INFO     | sufficient remaining disk space (220982149120 B)
[2025-12-03 05:38:29] 2025-12-03 04:37:58,671 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 05:38:29] 2025-12-03 04:37:58,671 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 05:38:29] 2025-12-03 04:37:58,671 | INFO     | update_server=False
[2025-12-03 05:38:29] 2025-12-03 04:37:58,671 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 05:38:29] 2025-12-03 04:37:58,859 | INFO     | all payload control threads have been joined
[2025-12-03 05:38:29] 2025-12-03 04:37:59,409 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 05:38:29] 2025-12-03 04:37:59,409 | INFO     | aborting loop
[2025-12-03 05:38:29] 2025-12-03 04:37:59,676 | INFO     | [job] retrieve thread has finished
[2025-12-03 05:38:29] 2025-12-03 04:37:59,724 | INFO     | all data control threads have been joined
[2025-12-03 05:38:29] 2025-12-03 04:37:59,842 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 05:38:29] 2025-12-03 04:37:59,864 | INFO     | [payload] control thread has finished
[2025-12-03 05:38:29] 2025-12-03 04:37:59,994 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 05:38:29] 2025-12-03 04:38:00,248 | INFO     | all job control threads have been joined
[2025-12-03 05:38:29] 2025-12-03 04:38:00,390 | INFO     | [job] validate thread has finished
[2025-12-03 05:38:29] 2025-12-03 04:38:00,414 | INFO     | [job] job monitor thread has finished
[2025-12-03 05:38:29] 2025-12-03 04:38:00,468 | INFO     | [data] copytool_in thread has finished
[2025-12-03 05:38:29] 2025-12-03 04:38:00,504 | INFO     | [payload] validate_post thread has finished
[2025-12-03 05:38:29] 2025-12-03 04:38:00,621 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 05:38:29] 2025-12-03 04:38:00,695 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 05:38:29] 2025-12-03 04:38:00,729 | INFO     | [data] control thread has finished
[2025-12-03 05:38:29] 2025-12-03 04:38:00,742 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 05:38:29] 2025-12-03 04:38:00,898 | INFO     | [payload] failed_post thread has finished
[2025-12-03 05:38:29] 2025-12-03 04:38:01,253 | INFO     | [job] control thread has finished
[2025-12-03 05:38:29] 2025-12-03 04:38:01,638 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 05:38:29] 2025-12-03 04:38:01,999 | INFO     | [data] copytool_out thread has finished
[2025-12-03 05:38:29] 2025-12-03 04:38:02,281 | INFO     | [monitor] cgroup control has ended
[2025-12-03 05:38:29] 2025-12-03 04:38:02,643 | INFO     | [job] queue monitor thread has finished
[2025-12-03 05:38:29] 2025-12-03 04:38:04,748 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 05:38:29] 2025-12-03 04:38:09,601 | INFO     | job.realtimelogging is not enabled
[2025-12-03 05:38:29] 2025-12-03 04:38:10,607 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 05:38:29] 2025-12-03 04:38:12,597 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456062920448)>']
[2025-12-03 05:38:29] 2025-12-03 04:38:17,622 | INFO     | all workflow threads have been joined
[2025-12-03 05:38:29] 2025-12-03 04:38:17,622 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 05:38:29] 2025-12-03 04:38:17,622 | INFO     | traces error code: 0
[2025-12-03 05:38:29] 2025-12-03 04:38:17,623 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 05:38:29] 2025-12-03 04:38:28,941 | INFO     | PID=21007 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-03 05:38:29] 2025-12-03 04:38:28,941 | INFO     | .. there are 4 such processes running
[2025-12-03 05:38:29] 2025-12-03 04:38:28,941 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 05:38:29] 2025-12-03 04:38:28,941 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 05:38:29] 2025-12-03 04:38:28,941 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 05:38:29] 2025-12-03 04:38:28,941 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 05:38:29] 2025-12-03 04:38:28,941 | INFO     | [monitor] control thread has ended
[2025-12-03 05:38:29] 2025-12-03 04:38:28,994 [wrapper] ==== pilot stdout END ====
[2025-12-03 05:38:29] 2025-12-03 04:38:28,996 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 05:38:29] 2025-12-03 04:38:28,997 [wrapper] pilotpid: 21007
[2025-12-03 05:38:29] 2025-12-03 04:38:28,998 [wrapper] Pilot exit status: 0
[2025-12-03 05:38:29] 2025-12-03 04:38:29,003 [wrapper] pandaids: 6898762318
[2025-12-03 05:38:29] 2025-12-03 04:38:29,026 [wrapper] cleanup supervisor_pilot 19502 21008
[2025-12-03 05:38:29] 2025-12-03 04:38:29,027 [wrapper] Test setup, not cleaning
[2025-12-03 05:38:29] 2025-12-03 04:38:29,028 [wrapper] apfmon messages muted
[2025-12-03 05:38:29] 2025-12-03 04:38:29,029 [wrapper] ==== wrapper stdout END ====
[2025-12-03 05:38:29] 2025-12-03 04:38:29,031 [wrapper] ==== wrapper stderr END ====
[2025-12-03 05:38:29]  *** Error codes and diagnostics ***
[2025-12-03 05:38:29]     "exeErrorCode": 0,
[2025-12-03 05:38:29]     "exeErrorDiag": "",
[2025-12-03 05:38:29]     "pilotErrorCode": 0,
[2025-12-03 05:38:29]     "pilotErrorDiag": "",
[2025-12-03 05:38:29]  *** Listing of results directory ***
[2025-12-03 05:38:29] total 1315956
[2025-12-03 05:38:29] -rw------- 1 mf493845 unix-user    576529 Nov 27 00:42 pilot3.tar.gz
[2025-12-03 05:38:29] -rwx------ 1 mf493845 unix-user     36292 Nov 27 00:56 runpilot2-wrapper.sh
[2025-12-03 05:38:29] -rw------- 1 mf493845 unix-user      5112 Nov 27 00:56 queuedata.json
[2025-12-03 05:38:29] -rw------- 1 mf493845 unix-user       100 Dec  2 23:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 05:38:29] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  2 23:17 run_atlas
[2025-12-03 05:38:29] -rw------- 1 mf493845 unix-user       105 Dec  2 23:17 job.xml
[2025-12-03 05:38:29] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 01:02 start_atlas.sh
[2025-12-03 05:38:29] drwxrwx--x 2 mf493845 unix-user       100 Dec  3 01:02 shared
[2025-12-03 05:38:29] -rw-r--r-- 2 mf493845 unix-user    590105 Dec  3 01:02 input.tar.gz
[2025-12-03 05:38:29] -rw------- 1 mf493845 unix-user      6391 Dec  3 01:02 init_data.xml
[2025-12-03 05:38:29] -rw-r--r-- 2 mf493845 unix-user 412436549 Dec  3 01:02 EVNT.47483658._002745.pool.root.1
[2025-12-03 05:38:29] -rw------- 1 mf493845 unix-user         0 Dec  3 01:02 boinc_setup_complete
[2025-12-03 05:38:29] -rw------- 1 mf493845 unix-user      8192 Dec  3 01:02 boinc_mmap_file
[2025-12-03 05:38:29] -rw------- 1 mf493845 unix-user         0 Dec  3 01:02 boinc_lockfile
[2025-12-03 05:38:29] -rw------- 1 mf493845 unix-user      2786 Dec  3 01:02 pandaJob.out
[2025-12-03 05:38:29] -rw------- 1 mf493845 unix-user    989284 Dec  3 01:02 agis_schedconf.cvmfs.json
[2025-12-03 05:38:29] drwx------ 5 mf493845 unix-user       440 Dec  3 01:02 pilot3
[2025-12-03 05:38:29] -rw------- 1 mf493845 unix-user 923292285 Dec  3 05:37 HITS.47556161._007273.pool.root.1
[2025-12-03 05:38:29] -rw------- 1 mf493845 unix-user        95 Dec  3 05:37 pilot_heartbeat.json
[2025-12-03 05:38:29] -rw------- 1 mf493845 unix-user      1029 Dec  3 05:37 memory_monitor_summary.json
[2025-12-03 05:38:29] -rw------- 1 mf493845 unix-user   1516240 Dec  3 05:37 agis_ddmendpoints.agis.ALL.json
[2025-12-03 05:38:29] -rw------- 1 mf493845 unix-user   1570074 Dec  3 05:37 log.47556161._007273.job.log.tgz.1
[2025-12-03 05:38:29] -rw------- 1 mf493845 unix-user      8578 Dec  3 05:37 heartbeat.json
[2025-12-03 05:38:29] -rw------- 1 mf493845 unix-user       820 Dec  3 05:38 pilotlog.txt
[2025-12-03 05:38:29] -rw------- 1 mf493845 unix-user   2389157 Dec  3 05:38 log.47556161._007273.job.log.1
[2025-12-03 05:38:29] -rw------- 1 mf493845 unix-user       353 Dec  3 05:38 output.list
[2025-12-03 05:38:29] -rw------- 1 mf493845 unix-user       620 Dec  3 05:38 runtime_log
[2025-12-03 05:38:29] -rw------- 1 mf493845 unix-user   3983360 Dec  3 05:38 result.tar.gz
[2025-12-03 05:38:29] -rw------- 1 mf493845 unix-user      9221 Dec  3 05:38 runtime_log.err
[2025-12-03 05:38:29] -rw------- 1 mf493845 unix-user       650 Dec  3 05:38 8X5NDmIYei8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmQRNKDmMllHmm.diag
[2025-12-03 05:38:29] -rw------- 1 mf493845 unix-user     22022 Dec  3 05:38 stderr.txt
[2025-12-03 05:38:29] HITS file was successfully produced:
[2025-12-03 05:38:29] -rw------- 1 mf493845 unix-user 923292285 Dec  3 05:37 shared/HITS.pool.root.1
[2025-12-03 05:38:29]  *** Contents of shared directory: ***
[2025-12-03 05:38:29] total 1308916
[2025-12-03 05:38:29] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 01:02 start_atlas.sh
[2025-12-03 05:38:29] -rw-r--r-- 2 mf493845 unix-user    590105 Dec  3 01:02 input.tar.gz
[2025-12-03 05:38:29] -rw-r--r-- 2 mf493845 unix-user 412436549 Dec  3 01:02 ATLAS.root_0
[2025-12-03 05:38:29] -rw------- 1 mf493845 unix-user 923292285 Dec  3 05:37 HITS.pool.root.1
[2025-12-03 05:38:29] -rw------- 1 mf493845 unix-user   3983360 Dec  3 05:38 result.tar.gz
05:38:31 (17271): run_atlas exited; CPU time 125106.060494
05:38:31 (17271): called boinc_finish(0)

</stderr_txt>
]]>

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