Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:03:00 (2402611): wrapper (7.7.26015): starting
10:03:00 (2402611): wrapper: running run_atlas (--nthreads 4)
[2025-12-05 10:03:00] Arguments: --nthreads 4
[2025-12-05 10:03:00] Threads: 4
[2025-12-05 10:03:00] Checking for CVMFS
[2025-12-05 10:03:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-05 10:03:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-05 10:03:00] Running cvmfs_config stat atlas.cern.ch
[2025-12-05 10:03:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-05 10:03:01] 2.9.2.0 3127036 24092 99036 153645 0 68 36793554 36864001 0 130560 0 9675368 99.963 1001433 1287 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-05 10:03:01] CVMFS is ok
[2025-12-05 10:03:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-05 10:03:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-05 10:03:01] Further information can be found at the LHC@home message board.
[2025-12-05 10:03:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-05 10:03:01] Checking for apptainer binary...
[2025-12-05 10:03:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-05 10:03:01] Running /usr/bin/apptainer --version
[2025-12-05 10:03:01] apptainer version 1.4.1-1.1
[2025-12-05 10:03:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-05 10:03:01] thA334
[2025-12-05 10:03:01] apptainer works
[2025-12-05 10:03:01] Set ATHENA_PROC_NUMBER=4
[2025-12-05 10:03:01] Set ATHENA_CORE_NUMBER=4
[2025-12-05 10:03:01] Starting ATLAS job with PandaID=6898686354
[2025-12-05 10:03:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-05 16:52:00]  *** The last 200 lines of the pilot log: ***
[2025-12-05 16:52:00] 2025-12-05 15:51:28,063 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-05 16:52:00] 2025-12-05 15:51:28,063 | INFO     | job 6898686354 has completed (purged errors)
[2025-12-05 16:52:00] 2025-12-05 15:51:28,063 | INFO     | overall cleanup function is called
[2025-12-05 16:52:00] 2025-12-05 15:51:29,072 | INFO     | --- collectZombieJob: --- 10, [2412996]
[2025-12-05 16:52:00] 2025-12-05 15:51:29,072 | INFO     | zombie collector waiting for pid 2412996
[2025-12-05 16:52:00] 2025-12-05 15:51:29,072 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-05 16:52:00] 2025-12-05 15:51:29,072 | INFO     | collected zombie processes
[2025-12-05 16:52:00] 2025-12-05 15:51:29,072 | INFO     | will attempt to kill all subprocesses of pid=2412996
[2025-12-05 16:52:00] 2025-12-05 15:51:29,116 | INFO     | process IDs to be killed: [2412996] (in reverse order)
[2025-12-05 16:52:00] 2025-12-05 15:51:29,147 | WARNING  | found no corresponding commands to process id(s)
[2025-12-05 16:52:00] 2025-12-05 15:51:29,147 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-05 16:52:00] 2025-12-05 15:51:29,149 | INFO     | did not find any defunct processes belonging to 2412996
[2025-12-05 16:52:00] 2025-12-05 15:51:29,150 | INFO     | did not find any defunct processes belonging to 2412996
[2025-12-05 16:52:00] 2025-12-05 15:51:29,151 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-05 16:52:00] 2025-12-05 15:51:29,151 | INFO     | ready for new job
[2025-12-05 16:52:00] 2025-12-05 15:51:29,151 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-05 16:52:00] 2025-12-05 15:51:29,152 | INFO     | ***************************************
[2025-12-05 16:52:00] 2025-12-05 15:51:29,152 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-05 16:52:00] 2025-12-05 15:51:29,152 | INFO     | ***************************************
[2025-12-05 16:52:00] 2025-12-05 15:51:29,153 | INFO     | 
[2025-12-05 16:52:00] 2025-12-05 15:51:29,153 | INFO     | architecture information:
[2025-12-05 16:52:00] 2025-12-05 15:51:29,153 | INFO     | executing command: cat /etc/os-release
[2025-12-05 16:52:00] 2025-12-05 15:51:29,167 | INFO     | cat /etc/os-release:
[2025-12-05 16:52:00] NAME="CentOS Linux"
[2025-12-05 16:52:00] VERSION="7 (Core)"
[2025-12-05 16:52:00] ID="centos"
[2025-12-05 16:52:00] ID_LIKE="rhel fedora"
[2025-12-05 16:52:00] VERSION_ID="7"
[2025-12-05 16:52:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-05 16:52:00] ANSI_COLOR="0;31"
[2025-12-05 16:52:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-05 16:52:00] HOME_URL="https://www.centos.org/"
[2025-12-05 16:52:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-05 16:52:00] 
[2025-12-05 16:52:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-05 16:52:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-05 16:52:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-05 16:52:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-05 16:52:00] 
[2025-12-05 16:52:00] 2025-12-05 15:51:29,167 | INFO     | ***************************************
[2025-12-05 16:52:00] 2025-12-05 15:51:29,670 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-05 16:52:00] 2025-12-05 15:51:29,687 | INFO     | sufficient remaining disk space (222763679744 B)
[2025-12-05 16:52:00] 2025-12-05 15:51:29,688 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-05 16:52:00] 2025-12-05 15:51:29,688 | INFO     | current server update state: UPDATING_FINAL
[2025-12-05 16:52:00] 2025-12-05 15:51:29,688 | INFO     | update_server=False
[2025-12-05 16:52:00] 2025-12-05 15:51:29,688 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-05 16:52:00] 2025-12-05 15:51:29,688 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-05 16:52:00] 2025-12-05 15:51:29,688 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-05 16:52:00] 2025-12-05 15:51:29,688 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-05 16:52:00] 2025-12-05 15:51:29,688 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-05 16:52:00] 2025-12-05 15:51:29,688 | INFO     | aborting loop
[2025-12-05 16:52:00] 2025-12-05 15:51:30,603 | INFO     | all data control threads have been joined
[2025-12-05 16:52:00] 2025-12-05 15:51:30,693 | INFO     | [job] retrieve thread has finished
[2025-12-05 16:52:00] 2025-12-05 15:51:30,694 | INFO     | [job] queue monitor thread has finished
[2025-12-05 16:52:00] 2025-12-05 15:51:30,694 | INFO     | [job] job monitor thread has finished
[2025-12-05 16:52:00] 2025-12-05 15:51:30,862 | INFO     | all payload control threads have been joined
[2025-12-05 16:52:00] 2025-12-05 15:51:30,873 | INFO     | all job control threads have been joined
[2025-12-05 16:52:00] 2025-12-05 15:51:30,985 | INFO     | [payload] validate_post thread has finished
[2025-12-05 16:52:00] 2025-12-05 15:51:31,078 | INFO     | [job] create_data_payload thread has finished
[2025-12-05 16:52:00] 2025-12-05 15:51:31,147 | INFO     | [job] validate thread has finished
[2025-12-05 16:52:00] 2025-12-05 15:51:31,391 | INFO     | [payload] validate_pre thread has finished
[2025-12-05 16:52:00] 2025-12-05 15:51:31,486 | INFO     | [payload] failed_post thread has finished
[2025-12-05 16:52:00] 2025-12-05 15:51:31,609 | INFO     | [data] control thread has finished
[2025-12-05 16:52:00] 2025-12-05 15:51:31,651 | INFO     | [data] copytool_in thread has finished
[2025-12-05 16:52:00] 2025-12-05 15:51:31,694 | INFO     | [data] copytool_out thread has finished
[2025-12-05 16:52:00] 2025-12-05 15:51:31,847 | INFO     | [payload] execute_payloads thread has finished
[2025-12-05 16:52:00] 2025-12-05 15:51:31,868 | INFO     | [payload] control thread has finished
[2025-12-05 16:52:00] 2025-12-05 15:51:31,879 | INFO     | [job] control thread has finished
[2025-12-05 16:52:00] 2025-12-05 15:51:33,695 | INFO     | [data] queue_monitor thread has finished
[2025-12-05 16:52:00] 2025-12-05 15:51:39,961 | INFO     | job.realtimelogging is not enabled
[2025-12-05 16:52:00] 2025-12-05 15:51:40,317 | INFO     | [monitor] cgroup control has ended
[2025-12-05 16:52:00] 2025-12-05 15:51:40,967 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-05 16:52:00] 2025-12-05 15:51:43,010 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139636348999488)>', '<ExcThread(monitor, started 139635409803008)>']
[2025-12-05 16:52:00] 2025-12-05 15:51:48,035 | INFO     | all workflow threads have been joined
[2025-12-05 16:52:00] 2025-12-05 15:51:48,036 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-05 16:52:00] 2025-12-05 15:51:48,036 | INFO     | traces error code: 0
[2025-12-05 16:52:00] 2025-12-05 15:51:48,036 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-05 16:52:00] 2025-12-05 15:52:00,104 | INFO     | PID=2406410 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-05 16:52:00] 2025-12-05 15:52:00,104 | INFO     | found 0 job(s) in 20 queues
[2025-12-05 16:52:00] 2025-12-05 15:52:00,104 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-05 16:52:00] 2025-12-05 15:52:00,104 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-05 16:52:00] 2025-12-05 15:52:00,104 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-05 16:52:00] 2025-12-05 15:52:00,104 | INFO     | [monitor] control thread has ended
[2025-12-05 16:52:00] 2025-12-05 15:52:00,170 [wrapper] ==== pilot stdout END ====
[2025-12-05 16:52:00] 2025-12-05 15:52:00,174 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-05 16:52:00] 2025-12-05 15:52:00,177 [wrapper] pilotpid: 2406410
[2025-12-05 16:52:00] 2025-12-05 15:52:00,181 [wrapper] Pilot exit status: 0
[2025-12-05 16:52:00] 2025-12-05 15:52:00,192 [wrapper] pandaids: 6898686354
[2025-12-05 16:52:00] 2025-12-05 15:52:00,213 [wrapper] cleanup supervisor_pilot 2457850 2406411
[2025-12-05 16:52:00] 2025-12-05 15:52:00,217 [wrapper] Test setup, not cleaning
[2025-12-05 16:52:00] 2025-12-05 15:52:00,220 [wrapper] apfmon messages muted
[2025-12-05 16:52:00] 2025-12-05 15:52:00,224 [wrapper] ==== wrapper stdout END ====
[2025-12-05 16:52:00] 2025-12-05 15:52:00,228 [wrapper] ==== wrapper stderr END ====
[2025-12-05 16:52:00]  *** Error codes and diagnostics ***
[2025-12-05 16:52:00]     "exeErrorCode": 0,
[2025-12-05 16:52:00]     "exeErrorDiag": "",
[2025-12-05 16:52:00]     "pilotErrorCode": 0,
[2025-12-05 16:52:00]     "pilotErrorDiag": "",
[2025-12-05 16:52:00]  *** Listing of results directory ***
[2025-12-05 16:52:00] total 1302008
[2025-12-05 16:52:00] -rw-r--r-- 1 boinc boinc    576529 Nov 26 17:12 pilot3.tar.gz
[2025-12-05 16:52:00] -rwx------ 1 boinc boinc     36292 Nov 26 17:36 runpilot2-wrapper.sh
[2025-12-05 16:52:00] -rw-r--r-- 1 boinc boinc      5112 Nov 26 17:37 queuedata.json
[2025-12-05 16:52:00] -rw-r--r-- 1 boinc boinc       100 Dec  5 10:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-05 16:52:00] -rwxr-xr-x 1 boinc boinc      7986 Dec  5 10:03 run_atlas
[2025-12-05 16:52:00] -rw-r--r-- 1 boinc boinc       105 Dec  5 10:03 job.xml
[2025-12-05 16:52:00] -rw-r--r-- 2 boinc boinc 409502909 Dec  5 10:03 EVNT.47483658._004295.pool.root.1
[2025-12-05 16:52:00] -rw-r--r-- 2 boinc boinc    590109 Dec  5 10:03 input.tar.gz
[2025-12-05 16:52:00] -rw-r--r-- 2 boinc boinc     15847 Dec  5 10:03 start_atlas.sh
[2025-12-05 16:52:00] drwxrwx--x 2 boinc boinc      4096 Dec  5 10:03 shared
[2025-12-05 16:52:00] -rw-r--r-- 1 boinc boinc         0 Dec  5 10:03 boinc_setup_complete
[2025-12-05 16:52:00] -rw-r--r-- 1 boinc boinc      6369 Dec  5 10:03 init_data.xml
[2025-12-05 16:52:00] -rw-r--r-- 1 boinc boinc         0 Dec  5 10:03 boinc_lockfile
[2025-12-05 16:52:00] -rw-r--r-- 1 boinc boinc      2786 Dec  5 10:03 pandaJob.out
[2025-12-05 16:52:00] -rw------- 1 boinc boinc    973665 Dec  5 10:03 agis_schedconf.cvmfs.json
[2025-12-05 16:52:00] drwx------ 5 boinc boinc      4096 Dec  5 10:03 pilot3
[2025-12-05 16:52:00] -rw-r--r-- 1 boinc boinc       532 Dec  5 16:47 boinc_task_state.xml
[2025-12-05 16:52:00] -rw------- 1 boinc boinc 910451299 Dec  5 16:51 HITS.47556185._000582.pool.root.1
[2025-12-05 16:52:00] -rw------- 1 boinc boinc      1025 Dec  5 16:51 memory_monitor_summary.json
[2025-12-05 16:52:00] -rw------- 1 boinc boinc        95 Dec  5 16:51 pilot_heartbeat.json
[2025-12-05 16:52:00] -rw------- 1 boinc boinc   1516240 Dec  5 16:51 agis_ddmendpoints.agis.ALL.json
[2025-12-05 16:52:00] -rw------- 1 boinc boinc   1249884 Dec  5 16:51 log.47556185._000582.job.log.tgz.1
[2025-12-05 16:52:00] -rw------- 1 boinc boinc      8582 Dec  5 16:51 heartbeat.json
[2025-12-05 16:52:00] -rw-r--r-- 1 boinc boinc      8192 Dec  5 16:51 boinc_mmap_file
[2025-12-05 16:52:00] -rw-r--r-- 1 boinc boinc        28 Dec  5 16:51 wrapper_checkpoint.txt
[2025-12-05 16:52:00] -rw------- 1 boinc boinc       747 Dec  5 16:52 pilotlog.txt
[2025-12-05 16:52:00] -rw------- 1 boinc boinc   3457022 Dec  5 16:52 log.47556185._000582.job.log.1
[2025-12-05 16:52:00] -rw------- 1 boinc boinc       353 Dec  5 16:52 output.list
[2025-12-05 16:52:00] -rw-r--r-- 1 boinc boinc       620 Dec  5 16:52 runtime_log
[2025-12-05 16:52:00] -rw------- 1 boinc boinc   4730880 Dec  5 16:52 result.tar.gz
[2025-12-05 16:52:00] -rw------- 1 boinc boinc       665 Dec  5 16:52 sWNNDmXgXi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmE9JKDm0pugkm.diag
[2025-12-05 16:52:00] -rw-r--r-- 1 boinc boinc      8898 Dec  5 16:52 runtime_log.err
[2025-12-05 16:52:00] -rw-r--r-- 1 boinc boinc     11227 Dec  5 16:52 stderr.txt
[2025-12-05 16:52:00] HITS file was successfully produced:
[2025-12-05 16:52:00] -rw------- 1 boinc boinc 910451299 Dec  5 16:51 shared/HITS.pool.root.1
[2025-12-05 16:52:00]  *** Contents of shared directory: ***
[2025-12-05 16:52:00] total 1294248
[2025-12-05 16:52:00] -rw-r--r-- 2 boinc boinc 409502909 Dec  5 10:03 ATLAS.root_0
[2025-12-05 16:52:00] -rw-r--r-- 2 boinc boinc    590109 Dec  5 10:03 input.tar.gz
[2025-12-05 16:52:00] -rw-r--r-- 2 boinc boinc     15847 Dec  5 10:03 start_atlas.sh
[2025-12-05 16:52:00] -rw------- 1 boinc boinc 910451299 Dec  5 16:51 HITS.pool.root.1
[2025-12-05 16:52:00] -rw------- 1 boinc boinc   4730880 Dec  5 16:52 result.tar.gz
16:52:01 (2402611): run_atlas exited; CPU time 96020.212476
16:52:01 (2402611): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN