Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
00:58:34 (17391): wrapper (7.7.26015): starting
00:58:34 (17391): wrapper: running run_atlas (--nthreads 8)
[2025-12-03 00:58:34] Arguments: --nthreads 8
[2025-12-03 00:58:34] Threads: 8
[2025-12-03 00:58:34] Checking for CVMFS
[2025-12-03 00:58:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 00:58:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 00:58:35] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 00:58:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 00:58:35] 2.11.0.0 7924 75024 106656 153574 3 82 3443819 4095975 266 130560 0 4959632 99.515 4734866 485 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-03 00:58:35] CVMFS is ok
[2025-12-03 00:58:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-03 00:58:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-03 00:58:35] Further information can be found at the LHC@home message board.
[2025-12-03 00:58:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 00:58:35] Checking for apptainer binary...
[2025-12-03 00:58:35] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-03 00:58:35] apptainer is not installed, using version from CVMFS
[2025-12-03 00:58:35] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 00:58:35] WARNING: Environment variable TMPDIR already has value [/tmp/job_10945949/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node097
[2025-12-03 00:58:35] apptainer works
[2025-12-03 00:58:35] Set ATHENA_PROC_NUMBER=8
[2025-12-03 00:58:35] Set ATHENA_CORE_NUMBER=8
[2025-12-03 00:58:35] Starting ATLAS job with PandaID=6893874150
[2025-12-03 00:58:35] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10945949/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 05:36:13]  *** The last 200 lines of the pilot log: ***
[2025-12-03 05:36:13] 2025-12-03 04:35:41,313 | INFO     | using path: /tmp/job_10945949/atlas/pilot/slots/0/PanDA_Pilot-6893874150/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 05:36:13] 2025-12-03 04:35:41,313 | INFO     | extracted standard info from prmon json
[2025-12-03 05:36:13] 2025-12-03 04:35:41,313 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 05:36:13] 2025-12-03 04:35:41,313 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 05:36:13] 2025-12-03 04:35:41,316 | INFO     | fitting pss+swap vs Time
[2025-12-03 05:36:13] 2025-12-03 04:35:41,316 | INFO     | sum of square deviations: 6309000152.0
[2025-12-03 05:36:13] 2025-12-03 04:35:41,317 | INFO     | sum of deviations: 480626026224.0
[2025-12-03 05:36:13] 2025-12-03 04:35:41,317 | INFO     | mean x: 1764728234.0
[2025-12-03 05:36:13] 2025-12-03 04:35:41,317 | INFO     | mean y: 3024031.6373626376
[2025-12-03 05:36:13] 2025-12-03 04:35:41,317 | INFO     | intersect: -134435761518.84955
[2025-12-03 05:36:13] 2025-12-03 04:35:41,317 | INFO     | chi2: 6.431126358308117
[2025-12-03 05:36:13] 2025-12-03 04:35:41,317 | INFO     | sum of square deviations: 5968658887.0
[2025-12-03 05:36:13] 2025-12-03 04:35:41,318 | INFO     | sum of deviations: 538738412280.49994
[2025-12-03 05:36:13] 2025-12-03 04:35:41,318 | INFO     | mean x: 1764728081.5
[2025-12-03 05:36:13] 2025-12-03 04:35:41,318 | INFO     | mean y: 3049859.1082089553
[2025-12-03 05:36:13] 2025-12-03 04:35:41,318 | INFO     | intersect: -159283453647.54172
[2025-12-03 05:36:13] 2025-12-03 04:35:41,319 | INFO     | chi2: 4.414478681247127
[2025-12-03 05:36:13] 2025-12-03 04:35:41,319 | INFO     | current chi2=4.414478681247127 (change=31.35761241039469 %)
[2025-12-03 05:36:13] 2025-12-03 04:35:41,319 | INFO     | sum of square deviations: 5640782972.0
[2025-12-03 05:36:13] 2025-12-03 04:35:41,320 | INFO     | sum of deviations: 516609264434.9999
[2025-12-03 05:36:13] 2025-12-03 04:35:41,320 | INFO     | mean x: 1764727929.0
[2025-12-03 05:36:13] 2025-12-03 04:35:41,320 | INFO     | mean y: 3039565.946768061
[2025-12-03 05:36:13] 2025-12-03 04:35:41,320 | INFO     | intersect: -161618990895.78302
[2025-12-03 05:36:13] 2025-12-03 04:35:41,320 | INFO     | chi2: 4.41591866879657
[2025-12-03 05:36:13] 2025-12-03 04:35:41,320 | INFO     | current chi2=4.41591866879657 (change=-0.03261965122993471 %)
[2025-12-03 05:36:13] 2025-12-03 04:35:41,320 | INFO     | right removable region: 262
[2025-12-03 05:36:13] 2025-12-03 04:35:41,320 | INFO     | sum of square deviations: 5968658887.0
[2025-12-03 05:36:13] 2025-12-03 04:35:41,321 | INFO     | sum of deviations: 375619375297.0
[2025-12-03 05:36:13] 2025-12-03 04:35:41,321 | INFO     | mean x: 1764728386.5
[2025-12-03 05:36:13] 2025-12-03 04:35:41,321 | INFO     | mean y: 3071022.276119403
[2025-12-03 05:36:13] 2025-12-03 04:35:41,321 | INFO     | intersect: -111054737214.97534
[2025-12-03 05:36:13] 2025-12-03 04:35:41,322 | INFO     | chi2: 3.0747819319309473
[2025-12-03 05:36:13] 2025-12-03 04:35:41,322 | INFO     | current chi2=3.0747819319309473 (change=52.1890605063488 %)
[2025-12-03 05:36:13] 2025-12-03 04:35:41,322 | INFO     | sum of square deviations: 5640782972.0
[2025-12-03 05:36:13] 2025-12-03 04:35:41,323 | INFO     | sum of deviations: 322695709539.00006
[2025-12-03 05:36:13] 2025-12-03 04:35:41,323 | INFO     | mean x: 1764728539.0
[2025-12-03 05:36:13] 2025-12-03 04:35:41,323 | INFO     | mean y: 3095542.4676806084
[2025-12-03 05:36:13] 2025-12-03 04:35:41,323 | INFO     | intersect: -100952805590.9553
[2025-12-03 05:36:13] 2025-12-03 04:35:41,323 | INFO     | chi2: 2.4289218473276755
[2025-12-03 05:36:13] 2025-12-03 04:35:41,323 | INFO     | current chi2=2.4289218473276755 (change=21.005069591965338 %)
[2025-12-03 05:36:13] 2025-12-03 04:35:41,323 | INFO     | left removable region: 20
[2025-12-03 05:36:13] 2025-12-03 04:35:41,323 | INFO     | sum of square deviations: 4394577280.5
[2025-12-03 05:36:13] 2025-12-03 04:35:41,324 | INFO     | sum of deviations: 320063231603.0
[2025-12-03 05:36:13] 2025-12-03 04:35:41,324 | INFO     | mean x: 1764728508.5
[2025-12-03 05:36:13] 2025-12-03 04:35:41,324 | INFO     | mean y: 3133809.3140495867
[2025-12-03 05:36:13] 2025-12-03 04:35:41,324 | INFO     | intersect: -128524520451.93686
[2025-12-03 05:36:13] 2025-12-03 04:35:41,324 | INFO     | chi2: 0.3134232671028002
[2025-12-03 05:36:13] 2025-12-03 04:35:41,325 | INFO     | current memory leak: 72.83 B/s (using 242 data points, chi2=0.31)
[2025-12-03 05:36:13] 2025-12-03 04:35:41,325 | INFO     | could have reported an average CPU frequency of 2944 MHz (13 samples)
[2025-12-03 05:36:13] 2025-12-03 04:35:41,325 | INFO     | ..............................
[2025-12-03 05:36:13] 2025-12-03 04:35:41,325 | INFO     | . Timing measurements:
[2025-12-03 05:36:13] 2025-12-03 04:35:41,325 | INFO     | . get job = 0 s
[2025-12-03 05:36:13] 2025-12-03 04:35:41,325 | INFO     | . initial setup = 1 s
[2025-12-03 05:36:13] 2025-12-03 04:35:41,325 | INFO     | . payload setup = 2 s
[2025-12-03 05:36:13] 2025-12-03 04:35:41,325 | INFO     | . stage-in = 0 s
[2025-12-03 05:36:13] 2025-12-03 04:35:41,325 | INFO     | . payload execution = 16597 s
[2025-12-03 05:36:13] 2025-12-03 04:35:41,325 | INFO     | . stage-out = 1 s
[2025-12-03 05:36:13] 2025-12-03 04:35:41,325 | INFO     | . log creation = 0 s
[2025-12-03 05:36:13] 2025-12-03 04:35:41,325 | INFO     | ..............................
[2025-12-03 05:36:13] 2025-12-03 04:35:41,373 | INFO     | 
[2025-12-03 05:36:13] 2025-12-03 04:35:41,373 | INFO     | job summary report
[2025-12-03 05:36:13] 2025-12-03 04:35:41,373 | INFO     | --------------------------------------------------
[2025-12-03 05:36:13] 2025-12-03 04:35:41,373 | INFO     | PanDA job id: 6893874150
[2025-12-03 05:36:13] 2025-12-03 04:35:41,373 | INFO     | task id: 47523449
[2025-12-03 05:36:13] 2025-12-03 04:35:41,373 | INFO     | errors: (none)
[2025-12-03 05:36:13] 2025-12-03 04:35:41,373 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 05:36:13] 2025-12-03 04:35:41,373 | INFO     | pilot state: finished 
[2025-12-03 05:36:13] 2025-12-03 04:35:41,373 | INFO     | transexitcode: 0
[2025-12-03 05:36:13] 2025-12-03 04:35:41,373 | INFO     | exeerrorcode: 0
[2025-12-03 05:36:13] 2025-12-03 04:35:41,373 | INFO     | exeerrordiag: 
[2025-12-03 05:36:13] 2025-12-03 04:35:41,373 | INFO     | exitcode: 0
[2025-12-03 05:36:13] 2025-12-03 04:35:41,373 | INFO     | exitmsg: OK
[2025-12-03 05:36:13] 2025-12-03 04:35:41,373 | INFO     | cpuconsumptiontime: 122838 s
[2025-12-03 05:36:13] 2025-12-03 04:35:41,373 | INFO     | nevents: 1000
[2025-12-03 05:36:13] 2025-12-03 04:35:41,373 | INFO     | neventsw: 0
[2025-12-03 05:36:13] 2025-12-03 04:35:41,374 | INFO     | pid: 15496
[2025-12-03 05:36:13] 2025-12-03 04:35:41,374 | INFO     | pgrp: 15496
[2025-12-03 05:36:13] 2025-12-03 04:35:41,374 | INFO     | corecount: 8
[2025-12-03 05:36:13] 2025-12-03 04:35:41,374 | INFO     | event service: False
[2025-12-03 05:36:13] 2025-12-03 04:35:41,374 | INFO     | sizes: {0: 2284440, 2: 2284702, 11: 2284730, 16604: 2317359, 16607: 2326439, 16608: 2326629}
[2025-12-03 05:36:13] 2025-12-03 04:35:41,374 | INFO     | --------------------------------------------------
[2025-12-03 05:36:13] 2025-12-03 04:35:41,374 | INFO     | 
[2025-12-03 05:36:13] 2025-12-03 04:35:41,374 | INFO     | executing command: ls -lF /tmp/job_10945949/atlas/pilot/slots/0
[2025-12-03 05:36:13] 2025-12-03 04:35:41,383 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 05:36:13] 2025-12-03 04:35:41,383 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 05:36:13] 2025-12-03 04:35:41,383 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 05:36:13] 2025-12-03 04:35:41,383 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 05:36:13] 2025-12-03 04:35:41,383 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 05:36:13] 2025-12-03 04:35:41,383 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 05:36:13] 2025-12-03 04:35:41,383 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 05:36:13] 2025-12-03 04:35:41,383 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 05:36:13] 2025-12-03 04:35:41,383 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 05:36:13] 2025-12-03 04:35:41,383 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 05:36:13] 2025-12-03 04:35:41,383 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 05:36:13] 2025-12-03 04:35:41,383 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 05:36:13] 2025-12-03 04:35:41,383 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 05:36:13] 2025-12-03 04:35:41,383 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 05:36:13] 2025-12-03 04:35:41,383 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 05:36:13] 2025-12-03 04:35:41,383 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 05:36:13] 2025-12-03 04:35:41,383 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 05:36:13] 2025-12-03 04:35:41,383 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 05:36:13] 2025-12-03 04:35:41,383 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 05:36:13] 2025-12-03 04:35:41,383 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 05:36:13] 2025-12-03 04:35:41,383 | INFO     | job 6893874150 has completed (purged errors)
[2025-12-03 05:36:13] 2025-12-03 04:35:41,384 | INFO     | overall cleanup function is called
[2025-12-03 05:36:13] 2025-12-03 04:35:41,930 | WARNING  | process 15496 can no longer be monitored (due to stat problems) - aborting
[2025-12-03 05:36:13] 2025-12-03 04:35:42,014 | INFO     | using path: /tmp/job_10945949/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 05:36:13] 2025-12-03 04:35:42,112 | INFO     | number of running child processes to parent process 15496: 1
[2025-12-03 05:36:13] 2025-12-03 04:35:42,112 | INFO     | maximum number of monitored processes: 16
[2025-12-03 05:36:13] 2025-12-03 04:35:42,112 | INFO     | aborting job monitoring since job object (job id=6893874150) has expired
[2025-12-03 05:36:13] 2025-12-03 04:35:42,391 | INFO     | --- collectZombieJob: --- 10, [15496]
[2025-12-03 05:36:13] 2025-12-03 04:35:42,391 | INFO     | zombie collector waiting for pid 15496
[2025-12-03 05:36:13] 2025-12-03 04:35:42,391 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 05:36:13] 2025-12-03 04:35:42,391 | INFO     | collected zombie processes
[2025-12-03 05:36:13] 2025-12-03 04:35:42,391 | INFO     | will attempt to kill all subprocesses of pid=15496
[2025-12-03 05:36:13] 2025-12-03 04:35:42,491 | INFO     | process IDs to be killed: [15496] (in reverse order)
[2025-12-03 05:36:13] 2025-12-03 04:35:42,528 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 05:36:13] 2025-12-03 04:35:42,528 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 05:36:13] 2025-12-03 04:35:42,532 | INFO     | did not find any defunct processes belonging to 15496
[2025-12-03 05:36:13] 2025-12-03 04:35:42,535 | INFO     | did not find any defunct processes belonging to 15496
[2025-12-03 05:36:13] 2025-12-03 04:35:42,536 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 05:36:13] 2025-12-03 04:35:42,536 | INFO     | ready for new job
[2025-12-03 05:36:13] 2025-12-03 04:35:42,536 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 05:36:13] 2025-12-03 04:35:42,537 | INFO     | ***************************************
[2025-12-03 05:36:13] 2025-12-03 04:35:42,537 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 05:36:13] 2025-12-03 04:35:42,537 | INFO     | ***************************************
[2025-12-03 05:36:13] 2025-12-03 04:35:42,537 | INFO     | 
[2025-12-03 05:36:13] 2025-12-03 04:35:42,550 | INFO     | architecture information:
[2025-12-03 05:36:13] 2025-12-03 04:35:42,551 | INFO     | executing command: cat /etc/os-release
[2025-12-03 05:36:13] 2025-12-03 04:35:42,557 | INFO     | cat /etc/os-release:
[2025-12-03 05:36:13] NAME="CentOS Linux"
[2025-12-03 05:36:13] VERSION="7 (Core)"
[2025-12-03 05:36:13] ID="centos"
[2025-12-03 05:36:13] ID_LIKE="rhel fedora"
[2025-12-03 05:36:13] VERSION_ID="7"
[2025-12-03 05:36:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 05:36:13] ANSI_COLOR="0;31"
[2025-12-03 05:36:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 05:36:13] HOME_URL="https://www.centos.org/"
[2025-12-03 05:36:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 05:36:13] 
[2025-12-03 05:36:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 05:36:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 05:36:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 05:36:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 05:36:13] 
[2025-12-03 05:36:13] 2025-12-03 04:35:42,557 | INFO     | ***************************************
[2025-12-03 05:36:13] 2025-12-03 04:35:43,059 | INFO     | executing command: df -mP /tmp/job_10945949/atlas/pilot/slots/0
[2025-12-03 05:36:13] 2025-12-03 04:35:43,065 | INFO     | sufficient remaining disk space (220263874560 B)
[2025-12-03 05:36:13] 2025-12-03 04:35:43,066 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 05:36:13] 2025-12-03 04:35:43,066 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 05:36:13] 2025-12-03 04:35:43,066 | INFO     | update_server=False
[2025-12-03 05:36:13] 2025-12-03 04:35:43,066 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 05:36:13] 2025-12-03 04:35:43,066 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 05:36:13] 2025-12-03 04:35:43,066 | INFO     | will abort loop
[2025-12-03 05:36:13] 2025-12-03 04:35:43,066 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 05:36:13] 2025-12-03 04:35:43,066 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 05:36:13] 2025-12-03 04:35:44,017 | INFO     | all data control threads have been joined
[2025-12-03 05:36:13] 2025-12-03 04:35:44,066 | INFO     | [job] retrieve thread has finished
[2025-12-03 05:36:13] 2025-12-03 04:35:44,071 | INFO     | [job] job monitor thread has finished
[2025-12-03 05:36:13] 2025-12-03 04:35:44,071 | INFO     | [job] queue monitor thread has finished
[2025-12-03 05:36:13] 2025-12-03 04:35:44,135 | INFO     | all payload control threads have been joined
[2025-12-03 05:36:13] 2025-12-03 04:35:44,277 | INFO     | [payload] validate_post thread has finished
[2025-12-03 05:36:13] 2025-12-03 04:35:44,433 | INFO     | [job] validate thread has finished
[2025-12-03 05:36:13] 2025-12-03 04:35:44,592 | INFO     | all job control threads have been joined
[2025-12-03 05:36:13] 2025-12-03 04:35:44,752 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 05:36:13] 2025-12-03 04:35:44,801 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 05:36:13] 2025-12-03 04:35:44,915 | INFO     | [payload] failed_post thread has finished
[2025-12-03 05:36:13] 2025-12-03 04:35:45,023 | INFO     | [data] control thread has finished
[2025-12-03 05:36:13] 2025-12-03 04:35:45,071 | INFO     | [data] copytool_out thread has finished
[2025-12-03 05:36:13] 2025-12-03 04:35:45,091 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 05:36:13] 2025-12-03 04:35:45,140 | INFO     | [payload] control thread has finished
[2025-12-03 05:36:13] 2025-12-03 04:35:45,236 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 05:36:13] 2025-12-03 04:35:45,372 | INFO     | [data] copytool_in thread has finished
[2025-12-03 05:36:13] 2025-12-03 04:35:45,531 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 05:36:13] 2025-12-03 04:35:45,597 | INFO     | [job] control thread has finished
[2025-12-03 05:36:13] 2025-12-03 04:35:49,536 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 05:36:13] 2025-12-03 04:36:07,658 | INFO     | [monitor] cgroup control has ended
[2025-12-03 05:36:13] 2025-12-03 04:36:08,328 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456060819200)>']
[2025-12-03 05:36:13] 2025-12-03 04:36:13,218 | INFO     | PID=23180 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-03 05:36:13] 2025-12-03 04:36:13,218 | INFO     | .. there are 3 such processes running
[2025-12-03 05:36:13] 2025-12-03 04:36:13,219 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 05:36:13] 2025-12-03 04:36:13,219 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 05:36:13] 2025-12-03 04:36:13,219 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 05:36:13] 2025-12-03 04:36:13,219 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 05:36:13] 2025-12-03 04:36:13,219 | INFO     | [monitor] control thread has ended
[2025-12-03 05:36:13] 2025-12-03 04:36:13,341 | INFO     | all workflow threads have been joined
[2025-12-03 05:36:13] 2025-12-03 04:36:13,341 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 05:36:13] 2025-12-03 04:36:13,341 | INFO     | traces error code: 0
[2025-12-03 05:36:13] 2025-12-03 04:36:13,341 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 05:36:13] 2025-12-03 04:36:13,386 [wrapper] ==== pilot stdout END ====
[2025-12-03 05:36:13] 2025-12-03 04:36:13,387 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 05:36:13] 2025-12-03 04:36:13,389 [wrapper] pilotpid: 23180
[2025-12-03 05:36:13] 2025-12-03 04:36:13,390 [wrapper] Pilot exit status: 0
[2025-12-03 05:36:13] 2025-12-03 04:36:13,393 [wrapper] pandaids: 6893874150
[2025-12-03 05:36:13] 2025-12-03 04:36:13,417 [wrapper] cleanup supervisor_pilot 21182 23181
[2025-12-03 05:36:13] 2025-12-03 04:36:13,418 [wrapper] Test setup, not cleaning
[2025-12-03 05:36:13] 2025-12-03 04:36:13,419 [wrapper] apfmon messages muted
[2025-12-03 05:36:13] 2025-12-03 04:36:13,420 [wrapper] ==== wrapper stdout END ====
[2025-12-03 05:36:13] 2025-12-03 04:36:13,421 [wrapper] ==== wrapper stderr END ====
[2025-12-03 05:36:13]  *** Error codes and diagnostics ***
[2025-12-03 05:36:13]     "exeErrorCode": 0,
[2025-12-03 05:36:13]     "exeErrorDiag": "",
[2025-12-03 05:36:13]     "pilotErrorCode": 0,
[2025-12-03 05:36:13]     "pilotErrorDiag": "",
[2025-12-03 05:36:13]  *** Listing of results directory ***
[2025-12-03 05:36:13] total 1317316
[2025-12-03 05:36:13] -rw------- 1 mf493845 unix-user    576529 Nov 20 16:07 pilot3.tar.gz
[2025-12-03 05:36:13] -rwx------ 1 mf493845 unix-user     36292 Nov 20 16:41 runpilot2-wrapper.sh
[2025-12-03 05:36:13] -rw------- 1 mf493845 unix-user      5112 Nov 20 16:41 queuedata.json
[2025-12-03 05:36:13] -rw------- 1 mf493845 unix-user       100 Dec  2 23:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 05:36:13] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  2 23:14 run_atlas
[2025-12-03 05:36:13] -rw------- 1 mf493845 unix-user       105 Dec  2 23:14 job.xml
[2025-12-03 05:36:13] -rw-r--r-- 2 mf493845 unix-user 409943523 Dec  3 00:58 EVNT.47493127._000703.pool.root.1
[2025-12-03 05:36:13] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 00:58 start_atlas.sh
[2025-12-03 05:36:13] drwxrwx--x 2 mf493845 unix-user       100 Dec  3 00:58 shared
[2025-12-03 05:36:13] -rw-r--r-- 2 mf493845 unix-user    590094 Dec  3 00:58 input.tar.gz
[2025-12-03 05:36:13] -rw------- 1 mf493845 unix-user      6391 Dec  3 00:58 init_data.xml
[2025-12-03 05:36:13] -rw------- 1 mf493845 unix-user         0 Dec  3 00:58 boinc_setup_complete
[2025-12-03 05:36:13] -rw------- 1 mf493845 unix-user      8192 Dec  3 00:58 boinc_mmap_file
[2025-12-03 05:36:13] -rw------- 1 mf493845 unix-user         0 Dec  3 00:58 boinc_lockfile
[2025-12-03 05:36:13] -rw------- 1 mf493845 unix-user      2785 Dec  3 00:58 pandaJob.out
[2025-12-03 05:36:13] -rw------- 1 mf493845 unix-user    989284 Dec  3 00:58 agis_schedconf.cvmfs.json
[2025-12-03 05:36:13] drwx------ 5 mf493845 unix-user       440 Dec  3 00:58 pilot3
[2025-12-03 05:36:13] -rw------- 1 mf493845 unix-user 927132602 Dec  3 05:35 HITS.47523449._007025.pool.root.1
[2025-12-03 05:36:13] -rw------- 1 mf493845 unix-user      1031 Dec  3 05:35 memory_monitor_summary.json
[2025-12-03 05:36:13] -rw------- 1 mf493845 unix-user   1516240 Dec  3 05:35 agis_ddmendpoints.agis.ALL.json
[2025-12-03 05:36:13] -rw------- 1 mf493845 unix-user   1574245 Dec  3 05:35 log.47523449._007025.job.log.tgz.1
[2025-12-03 05:36:13] -rw------- 1 mf493845 unix-user      8571 Dec  3 05:35 heartbeat.json
[2025-12-03 05:36:13] -rw------- 1 mf493845 unix-user        95 Dec  3 05:36 pilot_heartbeat.json
[2025-12-03 05:36:13] -rw------- 1 mf493845 unix-user      4837 Dec  3 05:36 pilotlog.txt
[2025-12-03 05:36:13] -rw------- 1 mf493845 unix-user   2410962 Dec  3 05:36 log.47523449._007025.job.log.1
[2025-12-03 05:36:13] -rw------- 1 mf493845 unix-user       353 Dec  3 05:36 output.list
[2025-12-03 05:36:13] -rw------- 1 mf493845 unix-user       620 Dec  3 05:36 runtime_log
[2025-12-03 05:36:13] -rw------- 1 mf493845 unix-user   4003840 Dec  3 05:36 result.tar.gz
[2025-12-03 05:36:13] -rw------- 1 mf493845 unix-user      9221 Dec  3 05:36 runtime_log.err
[2025-12-03 05:36:13] -rw------- 1 mf493845 unix-user       650 Dec  3 05:36 IrDODmpxLg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmIsGKDmfQ4grn.diag
[2025-12-03 05:36:13] -rw------- 1 mf493845 unix-user     21726 Dec  3 05:36 stderr.txt
[2025-12-03 05:36:13] HITS file was successfully produced:
[2025-12-03 05:36:13] -rw------- 1 mf493845 unix-user 927132602 Dec  3 05:35 shared/HITS.pool.root.1
[2025-12-03 05:36:13]  *** Contents of shared directory: ***
[2025-12-03 05:36:13] total 1310248
[2025-12-03 05:36:13] -rw-r--r-- 2 mf493845 unix-user 409943523 Dec  3 00:58 ATLAS.root_0
[2025-12-03 05:36:13] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 00:58 start_atlas.sh
[2025-12-03 05:36:13] -rw-r--r-- 2 mf493845 unix-user    590094 Dec  3 00:58 input.tar.gz
[2025-12-03 05:36:13] -rw------- 1 mf493845 unix-user 927132602 Dec  3 05:35 HITS.pool.root.1
[2025-12-03 05:36:13] -rw------- 1 mf493845 unix-user   4003840 Dec  3 05:36 result.tar.gz
05:36:15 (17391): run_atlas exited; CPU time 123057.092778
05:36:15 (17391): called boinc_finish(0)

</stderr_txt>
]]>

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