Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
00:41:17 (14163): wrapper (7.7.26015): starting
00:41:17 (14163): wrapper: running run_atlas (--nthreads 8)
[2025-12-03 00:41:17] Arguments: --nthreads 8
[2025-12-03 00:41:17] Threads: 8
[2025-12-03 00:41:17] Checking for CVMFS
[2025-12-03 00:41:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 00:41:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 00:41:18] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 00:41:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 00:41:18] 2.11.0.0 4351 75127 118060 153574 1 18 3425393 4096000 917 130560 2 7052227 99.408 6279415 580 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-03 00:41:18] CVMFS is ok
[2025-12-03 00:41:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-03 00:41:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-03 00:41:18] Further information can be found at the LHC@home message board.
[2025-12-03 00:41:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 00:41:18] Checking for apptainer binary...
[2025-12-03 00:41:18] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-03 00:41:18] apptainer is not installed, using version from CVMFS
[2025-12-03 00:41:18] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 00:41:18] WARNING: Environment variable TMPDIR already has value [/tmp/job_10945944/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node096
[2025-12-03 00:41:18] apptainer works
[2025-12-03 00:41:18] Set ATHENA_PROC_NUMBER=8
[2025-12-03 00:41:18] Set ATHENA_CORE_NUMBER=8
[2025-12-03 00:41:18] Starting ATLAS job with PandaID=6905026935
[2025-12-03 00:41:18] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10945944/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 04:16:59]  *** The last 200 lines of the pilot log: ***
[2025-12-03 04:16:59] 2025-12-03 03:16:26,786 | INFO     | extracted standard info from prmon json
[2025-12-03 04:16:59] 2025-12-03 03:16:26,786 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 04:16:59] 2025-12-03 03:16:26,786 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 04:16:59] 2025-12-03 03:16:26,788 | INFO     | fitting pss+swap vs Time
[2025-12-03 04:16:59] 2025-12-03 03:16:26,789 | INFO     | sum of square deviations: 2954447953.0
[2025-12-03 04:16:59] 2025-12-03 03:16:26,789 | INFO     | sum of deviations: 1234482527401.9998
[2025-12-03 04:16:59] 2025-12-03 03:16:26,789 | INFO     | mean x: 1764725338.5
[2025-12-03 04:16:59] 2025-12-03 03:16:26,789 | INFO     | mean y: 5950719.405660378
[2025-12-03 04:16:59] 2025-12-03 03:16:26,789 | INFO     | intersect: -737364492320.4585
[2025-12-03 04:16:59] 2025-12-03 03:16:26,790 | INFO     | chi2: 4.830535074055206
[2025-12-03 04:16:59] 2025-12-03 03:16:26,790 | INFO     | sum of square deviations: 2750295288.0
[2025-12-03 04:16:59] 2025-12-03 03:16:26,790 | INFO     | sum of deviations: 1342324331083.0002
[2025-12-03 04:16:59] 2025-12-03 03:16:26,790 | INFO     | mean x: 1764725186.0
[2025-12-03 04:16:59] 2025-12-03 03:16:26,790 | INFO     | mean y: 6030642.570048309
[2025-12-03 04:16:59] 2025-12-03 03:16:26,790 | INFO     | intersect: -861295504933.7703
[2025-12-03 04:16:59] 2025-12-03 03:16:26,791 | INFO     | chi2: 1.6788363453844293
[2025-12-03 04:16:59] 2025-12-03 03:16:26,791 | INFO     | current chi2=1.6788363453844293 (change=65.24533370223403 %)
[2025-12-03 04:16:59] 2025-12-03 03:16:26,791 | INFO     | sum of square deviations: 2555770710.5
[2025-12-03 04:16:59] 2025-12-03 03:16:26,791 | INFO     | sum of deviations: 1271636771938.0
[2025-12-03 04:16:59] 2025-12-03 03:16:26,791 | INFO     | mean x: 1764725033.5
[2025-12-03 04:16:59] 2025-12-03 03:16:26,792 | INFO     | mean y: 5975197.00990099
[2025-12-03 04:16:59] 2025-12-03 03:16:26,792 | INFO     | intersect: -878041979472.2472
[2025-12-03 04:16:59] 2025-12-03 03:16:26,792 | INFO     | chi2: 1.6344832613933782
[2025-12-03 04:16:59] 2025-12-03 03:16:26,792 | INFO     | current chi2=1.6344832613933782 (change=2.6418944355707805 %)
[2025-12-03 04:16:59] 2025-12-03 03:16:26,792 | INFO     | right removable region: 201
[2025-12-03 04:16:59] 2025-12-03 03:16:26,792 | INFO     | sum of square deviations: 2750295288.0
[2025-12-03 04:16:59] 2025-12-03 03:16:26,793 | INFO     | sum of deviations: 1103475567278.0
[2025-12-03 04:16:59] 2025-12-03 03:16:26,793 | INFO     | mean x: 1764725491.0
[2025-12-03 04:16:59] 2025-12-03 03:16:26,793 | INFO     | mean y: 6048212.68115942
[2025-12-03 04:16:59] 2025-12-03 03:16:26,793 | INFO     | intersect: -708038455505.7762
[2025-12-03 04:16:59] 2025-12-03 03:16:26,793 | INFO     | chi2: 3.4006484654719444
[2025-12-03 04:16:59] 2025-12-03 03:16:26,793 | INFO     | current chi2=3.4006484654719444 (change=29.600998371033043 %)
[2025-12-03 04:16:59] 2025-12-03 03:16:26,793 | INFO     | sum of square deviations: 2555770710.5
[2025-12-03 04:16:59] 2025-12-03 03:16:26,794 | INFO     | sum of deviations: 1018018517729.5002
[2025-12-03 04:16:59] 2025-12-03 03:16:26,794 | INFO     | mean x: 1764725643.5
[2025-12-03 04:16:59] 2025-12-03 03:16:26,794 | INFO     | mean y: 6115208.133663367
[2025-12-03 04:16:59] 2025-12-03 03:16:26,794 | INFO     | intersect: -702922115565.606
[2025-12-03 04:16:59] 2025-12-03 03:16:26,794 | INFO     | chi2: 3.4083350142757816
[2025-12-03 04:16:59] 2025-12-03 03:16:26,794 | INFO     | current chi2=3.4083350142757816 (change=-0.22603185486184557 %)
[2025-12-03 04:16:59] 2025-12-03 03:16:26,794 | INFO     | left removable region: 20
[2025-12-03 04:16:59] 2025-12-03 03:16:26,794 | INFO     | sum of square deviations: 1838657730.0
[2025-12-03 04:16:59] 2025-12-03 03:16:26,795 | INFO     | sum of deviations: 894502858080.0
[2025-12-03 04:16:59] 2025-12-03 03:16:26,795 | INFO     | mean x: 1764725613.0
[2025-12-03 04:16:59] 2025-12-03 03:16:26,795 | INFO     | mean y: 6286585.2044198895
[2025-12-03 04:16:59] 2025-12-03 03:16:26,795 | INFO     | intersect: -858528762542.9875
[2025-12-03 04:16:59] 2025-12-03 03:16:26,795 | INFO     | chi2: 0.12520986910443246
[2025-12-03 04:16:59] 2025-12-03 03:16:26,795 | INFO     | current memory leak: 486.50 B/s (using 181 data points, chi2=0.13)
[2025-12-03 04:16:59] 2025-12-03 03:16:26,795 | INFO     | could have reported an average CPU frequency of 2979 MHz (11 samples)
[2025-12-03 04:16:59] 2025-12-03 03:16:26,795 | INFO     | ..............................
[2025-12-03 04:16:59] 2025-12-03 03:16:26,795 | INFO     | . Timing measurements:
[2025-12-03 04:16:59] 2025-12-03 03:16:26,795 | INFO     | . get job = 0 s
[2025-12-03 04:16:59] 2025-12-03 03:16:26,796 | INFO     | . initial setup = 1 s
[2025-12-03 04:16:59] 2025-12-03 03:16:26,796 | INFO     | . payload setup = 5 s
[2025-12-03 04:16:59] 2025-12-03 03:16:26,796 | INFO     | . stage-in = 0 s
[2025-12-03 04:16:59] 2025-12-03 03:16:26,796 | INFO     | . payload execution = 12876 s
[2025-12-03 04:16:59] 2025-12-03 03:16:26,796 | INFO     | . stage-out = 1 s
[2025-12-03 04:16:59] 2025-12-03 03:16:26,796 | INFO     | . log creation = 0 s
[2025-12-03 04:16:59] 2025-12-03 03:16:26,796 | INFO     | ..............................
[2025-12-03 04:16:59] 2025-12-03 03:16:26,845 | INFO     | 
[2025-12-03 04:16:59] 2025-12-03 03:16:26,845 | INFO     | job summary report
[2025-12-03 04:16:59] 2025-12-03 03:16:26,845 | INFO     | --------------------------------------------------
[2025-12-03 04:16:59] 2025-12-03 03:16:26,845 | INFO     | PanDA job id: 6905026935
[2025-12-03 04:16:59] 2025-12-03 03:16:26,845 | INFO     | task id: 47538113
[2025-12-03 04:16:59] 2025-12-03 03:16:26,845 | INFO     | errors: (none)
[2025-12-03 04:16:59] 2025-12-03 03:16:26,846 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 04:16:59] 2025-12-03 03:16:26,846 | INFO     | pilot state: finished 
[2025-12-03 04:16:59] 2025-12-03 03:16:26,846 | INFO     | transexitcode: 0
[2025-12-03 04:16:59] 2025-12-03 03:16:26,846 | INFO     | exeerrorcode: 0
[2025-12-03 04:16:59] 2025-12-03 03:16:26,846 | INFO     | exeerrordiag: 
[2025-12-03 04:16:59] 2025-12-03 03:16:26,846 | INFO     | exitcode: 0
[2025-12-03 04:16:59] 2025-12-03 03:16:26,846 | INFO     | exitmsg: OK
[2025-12-03 04:16:59] 2025-12-03 03:16:26,846 | INFO     | cpuconsumptiontime: 97070 s
[2025-12-03 04:16:59] 2025-12-03 03:16:26,846 | INFO     | nevents: 1000
[2025-12-03 04:16:59] 2025-12-03 03:16:26,846 | INFO     | neventsw: 0
[2025-12-03 04:16:59] 2025-12-03 03:16:26,846 | INFO     | pid: 25373
[2025-12-03 04:16:59] 2025-12-03 03:16:26,846 | INFO     | pgrp: 25373
[2025-12-03 04:16:59] 2025-12-03 03:16:26,846 | INFO     | corecount: 8
[2025-12-03 04:16:59] 2025-12-03 03:16:26,846 | INFO     | event service: False
[2025-12-03 04:16:59] 2025-12-03 03:16:26,846 | INFO     | sizes: {0: 2284526, 2: 2284788, 11: 2284816, 12886: 2335108, 12887: 2344188, 12892: 2344378}
[2025-12-03 04:16:59] 2025-12-03 03:16:26,846 | INFO     | --------------------------------------------------
[2025-12-03 04:16:59] 2025-12-03 03:16:26,846 | INFO     | 
[2025-12-03 04:16:59] 2025-12-03 03:16:26,846 | INFO     | executing command: ls -lF /tmp/job_10945944/atlas/pilot/slots/0
[2025-12-03 04:16:59] 2025-12-03 03:16:26,856 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 04:16:59] 2025-12-03 03:16:26,856 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 04:16:59] 2025-12-03 03:16:26,856 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 04:16:59] 2025-12-03 03:16:26,856 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 04:16:59] 2025-12-03 03:16:26,856 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 04:16:59] 2025-12-03 03:16:26,856 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 04:16:59] 2025-12-03 03:16:26,856 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 04:16:59] 2025-12-03 03:16:26,856 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 04:16:59] 2025-12-03 03:16:26,856 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 04:16:59] 2025-12-03 03:16:26,856 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 04:16:59] 2025-12-03 03:16:26,856 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 04:16:59] 2025-12-03 03:16:26,856 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 04:16:59] 2025-12-03 03:16:26,856 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 04:16:59] 2025-12-03 03:16:26,856 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 04:16:59] 2025-12-03 03:16:26,856 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 04:16:59] 2025-12-03 03:16:26,856 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 04:16:59] 2025-12-03 03:16:26,856 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 04:16:59] 2025-12-03 03:16:26,856 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 04:16:59] 2025-12-03 03:16:26,857 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 04:16:59] 2025-12-03 03:16:26,857 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 04:16:59] 2025-12-03 03:16:26,857 | INFO     | job 6905026935 has completed (purged errors)
[2025-12-03 04:16:59] 2025-12-03 03:16:26,857 | INFO     | overall cleanup function is called
[2025-12-03 04:16:59] 2025-12-03 03:16:26,890 | WARNING  | process 25373 can no longer be monitored (due to stat problems) - aborting
[2025-12-03 04:16:59] 2025-12-03 03:16:26,987 | INFO     | using path: /tmp/job_10945944/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 04:16:59] 2025-12-03 03:16:27,104 | INFO     | number of running child processes to parent process 25373: 1
[2025-12-03 04:16:59] 2025-12-03 03:16:27,104 | INFO     | maximum number of monitored processes: 16
[2025-12-03 04:16:59] 2025-12-03 03:16:27,104 | INFO     | aborting job monitoring since job object (job id=6905026935) has expired
[2025-12-03 04:16:59] 2025-12-03 03:16:27,866 | INFO     | --- collectZombieJob: --- 10, [25373]
[2025-12-03 04:16:59] 2025-12-03 03:16:27,866 | INFO     | zombie collector waiting for pid 25373
[2025-12-03 04:16:59] 2025-12-03 03:16:27,866 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 04:16:59] 2025-12-03 03:16:27,866 | INFO     | collected zombie processes
[2025-12-03 04:16:59] 2025-12-03 03:16:27,866 | INFO     | will attempt to kill all subprocesses of pid=25373
[2025-12-03 04:16:59] 2025-12-03 03:16:27,987 | INFO     | process IDs to be killed: [25373] (in reverse order)
[2025-12-03 04:16:59] 2025-12-03 03:16:28,034 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 04:16:59] 2025-12-03 03:16:28,034 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 04:16:59] 2025-12-03 03:16:28,039 | INFO     | did not find any defunct processes belonging to 25373
[2025-12-03 04:16:59] 2025-12-03 03:16:28,042 | INFO     | did not find any defunct processes belonging to 25373
[2025-12-03 04:16:59] 2025-12-03 03:16:28,043 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 04:16:59] 2025-12-03 03:16:28,043 | INFO     | ready for new job
[2025-12-03 04:16:59] 2025-12-03 03:16:28,043 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 04:16:59] 2025-12-03 03:16:28,044 | INFO     | ***************************************
[2025-12-03 04:16:59] 2025-12-03 03:16:28,044 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 04:16:59] 2025-12-03 03:16:28,044 | INFO     | ***************************************
[2025-12-03 04:16:59] 2025-12-03 03:16:28,044 | INFO     | 
[2025-12-03 04:16:59] 2025-12-03 03:16:28,059 | INFO     | architecture information:
[2025-12-03 04:16:59] 2025-12-03 03:16:28,059 | INFO     | executing command: cat /etc/os-release
[2025-12-03 04:16:59] 2025-12-03 03:16:28,065 | INFO     | cat /etc/os-release:
[2025-12-03 04:16:59] NAME="CentOS Linux"
[2025-12-03 04:16:59] VERSION="7 (Core)"
[2025-12-03 04:16:59] ID="centos"
[2025-12-03 04:16:59] ID_LIKE="rhel fedora"
[2025-12-03 04:16:59] VERSION_ID="7"
[2025-12-03 04:16:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 04:16:59] ANSI_COLOR="0;31"
[2025-12-03 04:16:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 04:16:59] HOME_URL="https://www.centos.org/"
[2025-12-03 04:16:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 04:16:59] 
[2025-12-03 04:16:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 04:16:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 04:16:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 04:16:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 04:16:59] 
[2025-12-03 04:16:59] 2025-12-03 03:16:28,065 | INFO     | ***************************************
[2025-12-03 04:16:59] 2025-12-03 03:16:28,568 | INFO     | executing command: df -mP /tmp/job_10945944/atlas/pilot/slots/0
[2025-12-03 04:16:59] 2025-12-03 03:16:28,573 | INFO     | sufficient remaining disk space (217334153216 B)
[2025-12-03 04:16:59] 2025-12-03 03:16:28,573 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 04:16:59] 2025-12-03 03:16:28,573 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 04:16:59] 2025-12-03 03:16:28,573 | INFO     | update_server=False
[2025-12-03 04:16:59] 2025-12-03 03:16:28,573 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 04:16:59] 2025-12-03 03:16:28,573 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 04:16:59] 2025-12-03 03:16:28,573 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 04:16:59] 2025-12-03 03:16:28,573 | INFO     | aborting loop
[2025-12-03 04:16:59] 2025-12-03 03:16:28,641 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 04:16:59] 2025-12-03 03:16:29,010 | INFO     | all job control threads have been joined
[2025-12-03 04:16:59] 2025-12-03 03:16:29,578 | INFO     | [job] retrieve thread has finished
[2025-12-03 04:16:59] 2025-12-03 03:16:29,579 | INFO     | [job] queue monitor thread has finished
[2025-12-03 04:16:59] 2025-12-03 03:16:29,579 | INFO     | [job] job monitor thread has finished
[2025-12-03 04:16:59] 2025-12-03 03:16:29,607 | INFO     | all data control threads have been joined
[2025-12-03 04:16:59] 2025-12-03 03:16:29,931 | INFO     | [payload] validate_post thread has finished
[2025-12-03 04:16:59] 2025-12-03 03:16:29,985 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 04:16:59] 2025-12-03 03:16:30,016 | INFO     | [job] control thread has finished
[2025-12-03 04:16:59] 2025-12-03 03:16:30,069 | INFO     | all payload control threads have been joined
[2025-12-03 04:16:59] 2025-12-03 03:16:30,157 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 04:16:59] 2025-12-03 03:16:30,248 | INFO     | [job] validate thread has finished
[2025-12-03 04:16:59] 2025-12-03 03:16:30,433 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 04:16:59] 2025-12-03 03:16:30,612 | INFO     | [data] control thread has finished
[2025-12-03 04:16:59] 2025-12-03 03:16:30,822 | INFO     | [data] copytool_in thread has finished
[2025-12-03 04:16:59] 2025-12-03 03:16:30,842 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 04:16:59] 2025-12-03 03:16:30,939 | INFO     | [payload] failed_post thread has finished
[2025-12-03 04:16:59] 2025-12-03 03:16:31,074 | INFO     | [payload] control thread has finished
[2025-12-03 04:16:59] 2025-12-03 03:16:31,991 | INFO     | [data] copytool_out thread has finished
[2025-12-03 04:16:59] 2025-12-03 03:16:32,646 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 04:16:59] 2025-12-03 03:16:39,429 | INFO     | job.realtimelogging is not enabled
[2025-12-03 04:16:59] 2025-12-03 03:16:40,434 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 04:16:59] 2025-12-03 03:16:43,788 | INFO     | [monitor] cgroup control has ended
[2025-12-03 04:16:59] 2025-12-03 03:16:44,507 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456062920448)>']
[2025-12-03 04:16:59] 2025-12-03 03:16:49,533 | INFO     | all workflow threads have been joined
[2025-12-03 04:16:59] 2025-12-03 03:16:49,533 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 04:16:59] 2025-12-03 03:16:49,533 | INFO     | traces error code: 0
[2025-12-03 04:16:59] 2025-12-03 03:16:49,533 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 04:16:59] 2025-12-03 03:16:59,595 | INFO     | PID=18031 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-03 04:16:59] 2025-12-03 03:16:59,595 | INFO     | .. there are 7 such processes running
[2025-12-03 04:16:59] 2025-12-03 03:16:59,595 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 04:16:59] 2025-12-03 03:16:59,595 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 04:16:59] 2025-12-03 03:16:59,595 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 04:16:59] 2025-12-03 03:16:59,595 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 04:16:59] 2025-12-03 03:16:59,596 | INFO     | [monitor] control thread has ended
[2025-12-03 04:16:59] 2025-12-03 03:16:59,650 [wrapper] ==== pilot stdout END ====
[2025-12-03 04:16:59] 2025-12-03 03:16:59,652 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 04:16:59] 2025-12-03 03:16:59,653 [wrapper] pilotpid: 18031
[2025-12-03 04:16:59] 2025-12-03 03:16:59,654 [wrapper] Pilot exit status: 0
[2025-12-03 04:16:59] 2025-12-03 03:16:59,658 [wrapper] pandaids: 6905026935
[2025-12-03 04:16:59] 2025-12-03 03:16:59,684 [wrapper] cleanup supervisor_pilot 20042 18032
[2025-12-03 04:16:59] 2025-12-03 03:16:59,685 [wrapper] Test setup, not cleaning
[2025-12-03 04:16:59] 2025-12-03 03:16:59,686 [wrapper] apfmon messages muted
[2025-12-03 04:16:59] 2025-12-03 03:16:59,687 [wrapper] ==== wrapper stdout END ====
[2025-12-03 04:16:59] 2025-12-03 03:16:59,688 [wrapper] ==== wrapper stderr END ====
[2025-12-03 04:16:59]  *** Error codes and diagnostics ***
[2025-12-03 04:16:59]     "exeErrorCode": 0,
[2025-12-03 04:16:59]     "exeErrorDiag": "",
[2025-12-03 04:16:59]     "pilotErrorCode": 0,
[2025-12-03 04:16:59]     "pilotErrorDiag": "",
[2025-12-03 04:16:59]  *** Listing of results directory ***
[2025-12-03 04:16:59] total 1035040
[2025-12-03 04:16:59] -rw------- 1 mf493845 unix-user    576529 Nov 30 01:16 pilot3.tar.gz
[2025-12-03 04:16:59] -rwx------ 1 mf493845 unix-user     36292 Nov 30 01:18 runpilot2-wrapper.sh
[2025-12-03 04:16:59] -rw------- 1 mf493845 unix-user      5112 Nov 30 01:23 queuedata.json
[2025-12-03 04:16:59] -rw------- 1 mf493845 unix-user       100 Dec  2 23:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 04:16:59] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  2 23:05 run_atlas
[2025-12-03 04:16:59] -rw------- 1 mf493845 unix-user       105 Dec  2 23:05 job.xml
[2025-12-03 04:16:59] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 00:41 start_atlas.sh
[2025-12-03 04:16:59] drwxrwx--x 2 mf493845 unix-user       100 Dec  3 00:41 shared
[2025-12-03 04:16:59] -rw-r--r-- 2 mf493845 unix-user    590137 Dec  3 00:41 input.tar.gz
[2025-12-03 04:16:59] -rw-r--r-- 2 mf493845 unix-user 376835160 Dec  3 00:41 EVNT.47528871._000048.pool.root.1
[2025-12-03 04:16:59] -rw------- 1 mf493845 unix-user         0 Dec  3 00:41 boinc_setup_complete
[2025-12-03 04:16:59] -rw------- 1 mf493845 unix-user      6391 Dec  3 00:41 init_data.xml
[2025-12-03 04:16:59] -rw------- 1 mf493845 unix-user      8192 Dec  3 00:41 boinc_mmap_file
[2025-12-03 04:16:59] -rw------- 1 mf493845 unix-user         0 Dec  3 00:41 boinc_lockfile
[2025-12-03 04:16:59] -rw------- 1 mf493845 unix-user      2879 Dec  3 00:41 pandaJob.out
[2025-12-03 04:16:59] -rw------- 1 mf493845 unix-user    989284 Dec  3 00:41 agis_schedconf.cvmfs.json
[2025-12-03 04:16:59] drwx------ 5 mf493845 unix-user       440 Dec  3 00:41 pilot3
[2025-12-03 04:16:59] -rw------- 1 mf493845 unix-user 672141876 Dec  3 04:16 HITS.47538113._002161.pool.root.1
[2025-12-03 04:16:59] -rw------- 1 mf493845 unix-user      1024 Dec  3 04:16 memory_monitor_summary.json
[2025-12-03 04:16:59] -rw------- 1 mf493845 unix-user   1516240 Dec  3 04:16 agis_ddmendpoints.agis.ALL.json
[2025-12-03 04:16:59] -rw------- 1 mf493845 unix-user   1609975 Dec  3 04:16 log.47538113._002161.job.log.tgz.1
[2025-12-03 04:16:59] -rw------- 1 mf493845 unix-user     28020 Dec  3 04:16 heartbeat.json
[2025-12-03 04:16:59] -rw------- 1 mf493845 unix-user       820 Dec  3 04:16 pilotlog.txt
[2025-12-03 04:16:59] -rw------- 1 mf493845 unix-user        95 Dec  3 04:16 pilot_heartbeat.json
[2025-12-03 04:16:59] -rw------- 1 mf493845 unix-user   1878966 Dec  3 04:16 log.47538113._002161.job.log.1
[2025-12-03 04:16:59] -rw------- 1 mf493845 unix-user       353 Dec  3 04:16 output.list
[2025-12-03 04:16:59] -rw------- 1 mf493845 unix-user       620 Dec  3 04:16 runtime_log
[2025-12-03 04:16:59] -rw------- 1 mf493845 unix-user   3532800 Dec  3 04:16 result.tar.gz
[2025-12-03 04:16:59] -rw------- 1 mf493845 unix-user      9221 Dec  3 04:16 runtime_log.err
[2025-12-03 04:16:59] -rw------- 1 mf493845 unix-user       650 Dec  3 04:16 kOzMDmWKkj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmg5LKDmQ6DG9m.diag
[2025-12-03 04:16:59] -rw------- 1 mf493845 unix-user     21642 Dec  3 04:16 stderr.txt
[2025-12-03 04:16:59] HITS file was successfully produced:
[2025-12-03 04:16:59] -rw------- 1 mf493845 unix-user 672141876 Dec  3 04:16 shared/HITS.pool.root.1
[2025-12-03 04:16:59]  *** Contents of shared directory: ***
[2025-12-03 04:16:59] total 1028444
[2025-12-03 04:16:59] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 00:41 start_atlas.sh
[2025-12-03 04:16:59] -rw-r--r-- 2 mf493845 unix-user    590137 Dec  3 00:41 input.tar.gz
[2025-12-03 04:16:59] -rw-r--r-- 2 mf493845 unix-user 376835160 Dec  3 00:41 ATLAS.root_0
[2025-12-03 04:16:59] -rw------- 1 mf493845 unix-user 672141876 Dec  3 04:16 HITS.pool.root.1
[2025-12-03 04:16:59] -rw------- 1 mf493845 unix-user   3532800 Dec  3 04:16 result.tar.gz
04:17:01 (14163): run_atlas exited; CPU time 97236.716304
04:17:01 (14163): called boinc_finish(0)

</stderr_txt>
]]>

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