Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
00:58:39 (23153): wrapper (7.7.26015): starting
00:58:39 (23153): wrapper: running run_atlas (--nthreads 8)
[2025-12-03 00:58:39] Arguments: --nthreads 8
[2025-12-03 00:58:39] Threads: 8
[2025-12-03 00:58:39] Checking for CVMFS
[2025-12-03 00:58:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 00:58:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 00:58:39] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 00:58:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 00:58:39] 2.11.0.0 7924 75024 107160 153574 3 87 3446741 4096000 295 130560 0 4972171 99.515 4737032 485 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-03 00:58:39] CVMFS is ok
[2025-12-03 00:58:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-03 00:58:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-03 00:58:39] Further information can be found at the LHC@home message board.
[2025-12-03 00:58:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 00:58:39] Checking for apptainer binary...
[2025-12-03 00:58:39] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-03 00:58:39] apptainer is not installed, using version from CVMFS
[2025-12-03 00:58:39] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 00:58:39] WARNING: Environment variable TMPDIR already has value [/tmp/job_10945937/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node097
[2025-12-03 00:58:39] apptainer works
[2025-12-03 00:58:39] Set ATHENA_PROC_NUMBER=8
[2025-12-03 00:58:39] Set ATHENA_CORE_NUMBER=8
[2025-12-03 00:58:39] Starting ATLAS job with PandaID=6899577181
[2025-12-03 00:58:39] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10945937/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 05:38:18]  *** The last 200 lines of the pilot log: ***
[2025-12-03 05:38:18] 2025-12-03 04:37:11,960 | INFO     | time since job start (16707s) is within the limit (172800.0s)
[2025-12-03 05:38:18] 2025-12-03 04:37:12,045 | INFO     | monitor loop #1225: job 0:6899577181 is in state 'finished'
[2025-12-03 05:38:18] 2025-12-03 04:37:12,045 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 05:38:18] 2025-12-03 04:37:12,492 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 05:38:18] 2025-12-03 04:37:12,497 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2396.2787656250002
[2025-12-03 05:38:18] 2025-12-03 04:37:12,502 | INFO     | using path: /tmp/job_10945937/atlas/pilot/slots/0/PanDA_Pilot-6899577181/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 05:38:18] 2025-12-03 04:37:12,502 | INFO     | extracted standard info from prmon json
[2025-12-03 05:38:18] 2025-12-03 04:37:12,502 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 05:38:18] 2025-12-03 04:37:12,502 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 05:38:18] 2025-12-03 04:37:12,505 | INFO     | fitting pss+swap vs Time
[2025-12-03 05:38:18] 2025-12-03 04:37:12,505 | INFO     | sum of square deviations: 6378584712.5
[2025-12-03 05:38:18] 2025-12-03 04:37:12,506 | INFO     | sum of deviations: 243652648676.00003
[2025-12-03 05:38:18] 2025-12-03 04:37:12,506 | INFO     | mean x: 1764728267.5
[2025-12-03 05:38:18] 2025-12-03 04:37:12,506 | INFO     | mean y: 2872251.9197080294
[2025-12-03 05:38:18] 2025-12-03 04:37:12,507 | INFO     | intersect: -67407178088.425865
[2025-12-03 05:38:18] 2025-12-03 04:37:12,507 | INFO     | chi2: 5.643539849853246
[2025-12-03 05:38:18] 2025-12-03 04:37:12,507 | INFO     | sum of square deviations: 6035722470.0
[2025-12-03 05:38:18] 2025-12-03 04:37:12,508 | INFO     | sum of deviations: 283567836903.99994
[2025-12-03 05:38:18] 2025-12-03 04:37:12,508 | INFO     | mean x: 1764728115.0
[2025-12-03 05:38:18] 2025-12-03 04:37:12,508 | INFO     | mean y: 2889812.6728624534
[2025-12-03 05:38:18] 2025-12-03 04:37:12,508 | INFO     | intersect: -82906842498.83005
[2025-12-03 05:38:18] 2025-12-03 04:37:12,508 | INFO     | chi2: 4.336603123904615
[2025-12-03 05:38:18] 2025-12-03 04:37:12,508 | INFO     | current chi2=4.336603123904615 (change=23.158102196844002 %)
[2025-12-03 05:38:18] 2025-12-03 04:37:12,508 | INFO     | right removable region: 268
[2025-12-03 05:38:18] 2025-12-03 04:37:12,508 | INFO     | sum of square deviations: 6035722470.0
[2025-12-03 05:38:18] 2025-12-03 04:37:12,509 | INFO     | sum of deviations: 145212165117.0
[2025-12-03 05:38:18] 2025-12-03 04:37:12,509 | INFO     | mean x: 1764728420.0
[2025-12-03 05:38:18] 2025-12-03 04:37:12,510 | INFO     | mean y: 2915977.713754647
[2025-12-03 05:38:18] 2025-12-03 04:37:12,510 | INFO     | intersect: -42454310308.852486
[2025-12-03 05:38:18] 2025-12-03 04:37:12,510 | INFO     | chi2: 2.1885172526462426
[2025-12-03 05:38:18] 2025-12-03 04:37:12,510 | INFO     | current chi2=2.1885172526462426 (change=61.22084169028854 %)
[2025-12-03 05:38:18] 2025-12-03 04:37:12,510 | INFO     | sum of square deviations: 5705372090.0
[2025-12-03 05:38:18] 2025-12-03 04:37:12,511 | INFO     | sum of deviations: 99367669803.50003
[2025-12-03 05:38:18] 2025-12-03 04:37:12,511 | INFO     | mean x: 1764728572.5
[2025-12-03 05:38:18] 2025-12-03 04:37:12,511 | INFO     | mean y: 2937043.412878788
[2025-12-03 05:38:18] 2025-12-03 04:37:12,511 | INFO     | intersect: -30732475707.726715
[2025-12-03 05:38:18] 2025-12-03 04:37:12,511 | INFO     | chi2: 1.4359864256771597
[2025-12-03 05:38:18] 2025-12-03 04:37:12,511 | INFO     | current chi2=1.4359864256771597 (change=34.385418989005515 %)
[2025-12-03 05:38:18] 2025-12-03 04:37:12,511 | INFO     | sum of square deviations: 5387301010.0
[2025-12-03 05:38:18] 2025-12-03 04:37:12,512 | INFO     | sum of deviations: 85092432937.0
[2025-12-03 05:38:18] 2025-12-03 04:37:12,512 | INFO     | mean x: 1764728725.0
[2025-12-03 05:38:18] 2025-12-03 04:37:12,512 | INFO     | mean y: 2943881.945945946
[2025-12-03 05:38:18] 2025-12-03 04:37:12,512 | INFO     | intersect: -27870950746.425674
[2025-12-03 05:38:18] 2025-12-03 04:37:12,513 | INFO     | chi2: 1.4113394435426647
[2025-12-03 05:38:18] 2025-12-03 04:37:12,513 | INFO     | current chi2=1.4113394435426647 (change=1.7163798831087402 %)
[2025-12-03 05:38:18] 2025-12-03 04:37:12,513 | INFO     | left removable region: 30
[2025-12-03 05:38:18] 2025-12-03 04:37:12,513 | INFO     | sum of square deviations: 4180243959.5
[2025-12-03 05:38:18] 2025-12-03 04:37:12,514 | INFO     | sum of deviations: 88682369983.99998
[2025-12-03 05:38:18] 2025-12-03 04:37:12,514 | INFO     | mean x: 1764728999.5
[2025-12-03 05:38:18] 2025-12-03 04:37:12,514 | INFO     | mean y: 2980942.1428571427
[2025-12-03 05:38:18] 2025-12-03 04:37:12,514 | INFO     | intersect: -37435109172.06956
[2025-12-03 05:38:18] 2025-12-03 04:37:12,514 | INFO     | chi2: 0.032004085170288944
[2025-12-03 05:38:18] 2025-12-03 04:37:12,514 | INFO     | current memory leak: 21.21 B/s (using 238 data points, chi2=0.03)
[2025-12-03 05:38:18] 2025-12-03 04:37:12,514 | INFO     | could have reported an average CPU frequency of 2954 MHz (13 samples)
[2025-12-03 05:38:18] 2025-12-03 04:37:12,514 | INFO     | ..............................
[2025-12-03 05:38:18] 2025-12-03 04:37:12,514 | INFO     | . Timing measurements:
[2025-12-03 05:38:18] 2025-12-03 04:37:12,514 | INFO     | . get job = 0 s
[2025-12-03 05:38:18] 2025-12-03 04:37:12,514 | INFO     | . initial setup = 1 s
[2025-12-03 05:38:18] 2025-12-03 04:37:12,514 | INFO     | . payload setup = 2 s
[2025-12-03 05:38:18] 2025-12-03 04:37:12,514 | INFO     | . stage-in = 0 s
[2025-12-03 05:38:18] 2025-12-03 04:37:12,514 | INFO     | . payload execution = 16683 s
[2025-12-03 05:38:18] 2025-12-03 04:37:12,515 | INFO     | . stage-out = 1 s
[2025-12-03 05:38:18] 2025-12-03 04:37:12,515 | INFO     | . log creation = 0 s
[2025-12-03 05:38:18] 2025-12-03 04:37:12,515 | INFO     | ..............................
[2025-12-03 05:38:18] 2025-12-03 04:37:13,065 | INFO     | 
[2025-12-03 05:38:18] 2025-12-03 04:37:13,065 | INFO     | job summary report
[2025-12-03 05:38:18] 2025-12-03 04:37:13,065 | INFO     | --------------------------------------------------
[2025-12-03 05:38:18] 2025-12-03 04:37:13,065 | INFO     | PanDA job id: 6899577181
[2025-12-03 05:38:18] 2025-12-03 04:37:13,065 | INFO     | task id: 47556173
[2025-12-03 05:38:18] 2025-12-03 04:37:13,065 | INFO     | errors: (none)
[2025-12-03 05:38:18] 2025-12-03 04:37:13,065 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 05:38:18] 2025-12-03 04:37:13,065 | INFO     | pilot state: finished 
[2025-12-03 05:38:18] 2025-12-03 04:37:13,065 | INFO     | transexitcode: 0
[2025-12-03 05:38:18] 2025-12-03 04:37:13,065 | INFO     | exeerrorcode: 0
[2025-12-03 05:38:18] 2025-12-03 04:37:13,065 | INFO     | exeerrordiag: 
[2025-12-03 05:38:18] 2025-12-03 04:37:13,065 | INFO     | exitcode: 0
[2025-12-03 05:38:18] 2025-12-03 04:37:13,065 | INFO     | exitmsg: OK
[2025-12-03 05:38:18] 2025-12-03 04:37:13,065 | INFO     | cpuconsumptiontime: 123414 s
[2025-12-03 05:38:18] 2025-12-03 04:37:13,065 | INFO     | nevents: 1000
[2025-12-03 05:38:18] 2025-12-03 04:37:13,065 | INFO     | neventsw: 0
[2025-12-03 05:38:18] 2025-12-03 04:37:13,065 | INFO     | pid: 26148
[2025-12-03 05:38:18] 2025-12-03 04:37:13,065 | INFO     | pgrp: 26148
[2025-12-03 05:38:18] 2025-12-03 04:37:13,065 | INFO     | corecount: 8
[2025-12-03 05:38:18] 2025-12-03 04:37:13,065 | INFO     | event service: False
[2025-12-03 05:38:18] 2025-12-03 04:37:13,065 | INFO     | sizes: {0: 2284160, 1: 2284470, 2: 2284732, 11: 2284760, 16689: 2317445, 16691: 2326653, 16696: 2326843}
[2025-12-03 05:38:18] 2025-12-03 04:37:13,065 | INFO     | --------------------------------------------------
[2025-12-03 05:38:18] 2025-12-03 04:37:13,065 | INFO     | 
[2025-12-03 05:38:18] 2025-12-03 04:37:13,066 | INFO     | executing command: ls -lF /tmp/job_10945937/atlas/pilot/slots/0
[2025-12-03 05:38:18] 2025-12-03 04:37:13,075 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 05:38:18] 2025-12-03 04:37:13,075 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 05:38:18] 2025-12-03 04:37:13,075 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 05:38:18] 2025-12-03 04:37:13,075 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 05:38:18] 2025-12-03 04:37:13,075 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 05:38:18] 2025-12-03 04:37:13,075 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 05:38:18] 2025-12-03 04:37:13,075 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 05:38:18] 2025-12-03 04:37:13,075 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 05:38:18] 2025-12-03 04:37:13,075 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 05:38:18] 2025-12-03 04:37:13,075 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 05:38:18] 2025-12-03 04:37:13,075 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 05:38:18] 2025-12-03 04:37:13,075 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 05:38:18] 2025-12-03 04:37:13,075 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 05:38:18] 2025-12-03 04:37:13,075 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 05:38:18] 2025-12-03 04:37:13,076 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 05:38:18] 2025-12-03 04:37:13,076 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 05:38:18] 2025-12-03 04:37:13,076 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 05:38:18] 2025-12-03 04:37:13,076 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 05:38:18] 2025-12-03 04:37:13,076 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 05:38:18] 2025-12-03 04:37:13,076 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 05:38:18] 2025-12-03 04:37:13,076 | INFO     | job 6899577181 has completed (purged errors)
[2025-12-03 05:38:18] 2025-12-03 04:37:13,076 | INFO     | overall cleanup function is called
[2025-12-03 05:38:18] 2025-12-03 04:37:14,083 | INFO     | --- collectZombieJob: --- 10, [26148]
[2025-12-03 05:38:18] 2025-12-03 04:37:14,083 | INFO     | zombie collector waiting for pid 26148
[2025-12-03 05:38:18] 2025-12-03 04:37:14,083 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 05:38:18] 2025-12-03 04:37:14,083 | INFO     | collected zombie processes
[2025-12-03 05:38:18] 2025-12-03 04:37:14,083 | INFO     | will attempt to kill all subprocesses of pid=26148
[2025-12-03 05:38:18] 2025-12-03 04:37:14,179 | INFO     | process IDs to be killed: [26148] (in reverse order)
[2025-12-03 05:38:18] 2025-12-03 04:37:14,213 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 05:38:18] 2025-12-03 04:37:14,213 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 05:38:18] 2025-12-03 04:37:14,217 | INFO     | did not find any defunct processes belonging to 26148
[2025-12-03 05:38:18] 2025-12-03 04:37:14,220 | INFO     | did not find any defunct processes belonging to 26148
[2025-12-03 05:38:18] 2025-12-03 04:37:14,221 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 05:38:18] 2025-12-03 04:37:14,221 | INFO     | ready for new job
[2025-12-03 05:38:18] 2025-12-03 04:37:14,221 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 05:38:18] 2025-12-03 04:37:14,222 | INFO     | ***************************************
[2025-12-03 05:38:18] 2025-12-03 04:37:14,222 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 05:38:18] 2025-12-03 04:37:14,222 | INFO     | ***************************************
[2025-12-03 05:38:18] 2025-12-03 04:37:14,222 | INFO     | 
[2025-12-03 05:38:18] 2025-12-03 04:37:14,236 | INFO     | architecture information:
[2025-12-03 05:38:18] 2025-12-03 04:37:14,237 | INFO     | executing command: cat /etc/os-release
[2025-12-03 05:38:18] 2025-12-03 04:37:14,243 | INFO     | cat /etc/os-release:
[2025-12-03 05:38:18] NAME="CentOS Linux"
[2025-12-03 05:38:18] VERSION="7 (Core)"
[2025-12-03 05:38:18] ID="centos"
[2025-12-03 05:38:18] ID_LIKE="rhel fedora"
[2025-12-03 05:38:18] VERSION_ID="7"
[2025-12-03 05:38:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 05:38:18] ANSI_COLOR="0;31"
[2025-12-03 05:38:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 05:38:18] HOME_URL="https://www.centos.org/"
[2025-12-03 05:38:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 05:38:18] 
[2025-12-03 05:38:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 05:38:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 05:38:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 05:38:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 05:38:18] 
[2025-12-03 05:38:18] 2025-12-03 04:37:14,243 | INFO     | ***************************************
[2025-12-03 05:38:18] 2025-12-03 04:37:14,746 | INFO     | executing command: df -mP /tmp/job_10945937/atlas/pilot/slots/0
[2025-12-03 05:38:18] 2025-12-03 04:37:14,753 | INFO     | sufficient remaining disk space (221607100416 B)
[2025-12-03 05:38:18] 2025-12-03 04:37:14,753 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 05:38:18] 2025-12-03 04:37:14,753 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 05:38:18] 2025-12-03 04:37:14,753 | INFO     | update_server=False
[2025-12-03 05:38:18] 2025-12-03 04:37:14,753 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 05:38:18] 2025-12-03 04:37:14,753 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 05:38:18] 2025-12-03 04:37:15,341 | INFO     | all data control threads have been joined
[2025-12-03 05:38:18] 2025-12-03 04:37:15,542 | INFO     | all job control threads have been joined
[2025-12-03 05:38:18] 2025-12-03 04:37:15,553 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 05:38:18] 2025-12-03 04:37:15,553 | INFO     | aborting loop
[2025-12-03 05:38:18] 2025-12-03 04:37:15,719 | INFO     | all payload control threads have been joined
[2025-12-03 05:38:18] 2025-12-03 04:37:15,758 | INFO     | [job] retrieve thread has finished
[2025-12-03 05:38:18] 2025-12-03 04:37:15,767 | INFO     | [payload] failed_post thread has finished
[2025-12-03 05:38:18] 2025-12-03 04:37:16,119 | INFO     | [data] copytool_in thread has finished
[2025-12-03 05:38:18] 2025-12-03 04:37:16,187 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 05:38:18] 2025-12-03 04:37:16,187 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 05:38:18] 2025-12-03 04:37:16,336 | INFO     | [payload] validate_post thread has finished
[2025-12-03 05:38:18] 2025-12-03 04:37:16,346 | INFO     | [data] control thread has finished
[2025-12-03 05:38:18] 2025-12-03 04:37:16,544 | INFO     | [job] control thread has finished
[2025-12-03 05:38:18] 2025-12-03 04:37:16,558 | INFO     | [job] job monitor thread has finished
[2025-12-03 05:38:18] 2025-12-03 04:37:16,724 | INFO     | [payload] control thread has finished
[2025-12-03 05:38:18] 2025-12-03 04:37:16,750 | INFO     | [job] validate thread has finished
[2025-12-03 05:38:18] 2025-12-03 04:37:17,188 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 05:38:18] 2025-12-03 04:37:17,202 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 05:38:18] 2025-12-03 04:37:17,222 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 05:38:18] 2025-12-03 04:37:17,572 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 05:38:18] 2025-12-03 04:37:18,193 | INFO     | [data] copytool_out thread has finished
[2025-12-03 05:38:18] 2025-12-03 04:37:18,578 | INFO     | [job] queue monitor thread has finished
[2025-12-03 05:38:18] 2025-12-03 04:37:18,758 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 05:38:18] 2025-12-03 04:37:45,145 | INFO     | PID=29087 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-03 05:38:18] 2025-12-03 04:37:45,145 | INFO     | .. there are 2 such processes running
[2025-12-03 05:38:18] 2025-12-03 04:37:45,145 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 05:38:18] 2025-12-03 04:37:45,145 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 05:38:18] 2025-12-03 04:37:45,145 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 05:38:18] 2025-12-03 04:38:11,685 | INFO     | [monitor] cgroup control has ended
[2025-12-03 05:38:18] 2025-12-03 04:38:13,226 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456065021696)>']
[2025-12-03 05:38:18] 2025-12-03 04:38:13,286 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 05:38:18] 2025-12-03 04:38:13,286 | INFO     | [monitor] control thread has ended
[2025-12-03 05:38:18] 2025-12-03 04:38:18,252 | INFO     | all workflow threads have been joined
[2025-12-03 05:38:18] 2025-12-03 04:38:18,252 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 05:38:18] 2025-12-03 04:38:18,252 | INFO     | traces error code: 0
[2025-12-03 05:38:18] 2025-12-03 04:38:18,252 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 05:38:18] 2025-12-03 04:38:18,303 [wrapper] ==== pilot stdout END ====
[2025-12-03 05:38:18] 2025-12-03 04:38:18,304 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 05:38:18] 2025-12-03 04:38:18,306 [wrapper] pilotpid: 29087
[2025-12-03 05:38:18] 2025-12-03 04:38:18,307 [wrapper] Pilot exit status: 0
[2025-12-03 05:38:18] 2025-12-03 04:38:18,310 [wrapper] pandaids: 6899577181
[2025-12-03 05:38:18] 2025-12-03 04:38:18,333 [wrapper] cleanup supervisor_pilot 21189 29088
[2025-12-03 05:38:18] 2025-12-03 04:38:18,335 [wrapper] Test setup, not cleaning
[2025-12-03 05:38:18] 2025-12-03 04:38:18,336 [wrapper] apfmon messages muted
[2025-12-03 05:38:18] 2025-12-03 04:38:18,337 [wrapper] ==== wrapper stdout END ====
[2025-12-03 05:38:18] 2025-12-03 04:38:18,338 [wrapper] ==== wrapper stderr END ====
[2025-12-03 05:38:18]  *** Error codes and diagnostics ***
[2025-12-03 05:38:18]     "exeErrorCode": 0,
[2025-12-03 05:38:18]     "exeErrorDiag": "",
[2025-12-03 05:38:18]     "pilotErrorCode": 0,
[2025-12-03 05:38:18]     "pilotErrorDiag": "",
[2025-12-03 05:38:18]  *** Listing of results directory ***
[2025-12-03 05:38:18] total 1319536
[2025-12-03 05:38:18] -rw------- 1 mf493845 unix-user    576529 Nov 27 09:46 pilot3.tar.gz
[2025-12-03 05:38:18] -rwx------ 1 mf493845 unix-user     36292 Nov 27 09:47 runpilot2-wrapper.sh
[2025-12-03 05:38:18] -rw------- 1 mf493845 unix-user      5112 Nov 27 09:49 queuedata.json
[2025-12-03 05:38:18] -rw------- 1 mf493845 unix-user       100 Dec  2 23:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 05:38:18] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  2 23:13 run_atlas
[2025-12-03 05:38:18] -rw------- 1 mf493845 unix-user       105 Dec  2 23:13 job.xml
[2025-12-03 05:38:18] -rw-r--r-- 2 mf493845 unix-user 411622596 Dec  3 00:58 EVNT.47483658._003394.pool.root.1
[2025-12-03 05:38:18] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 00:58 start_atlas.sh
[2025-12-03 05:38:18] drwxrwx--x 2 mf493845 unix-user       100 Dec  3 00:58 shared
[2025-12-03 05:38:18] -rw-r--r-- 2 mf493845 unix-user    590108 Dec  3 00:58 input.tar.gz
[2025-12-03 05:38:18] -rw------- 1 mf493845 unix-user      6391 Dec  3 00:58 init_data.xml
[2025-12-03 05:38:18] -rw------- 1 mf493845 unix-user         0 Dec  3 00:58 boinc_setup_complete
[2025-12-03 05:38:18] -rw------- 1 mf493845 unix-user      8192 Dec  3 00:58 boinc_mmap_file
[2025-12-03 05:38:18] -rw------- 1 mf493845 unix-user         0 Dec  3 00:58 boinc_lockfile
[2025-12-03 05:38:18] -rw------- 1 mf493845 unix-user      2787 Dec  3 00:58 pandaJob.out
[2025-12-03 05:38:18] -rw------- 1 mf493845 unix-user    989284 Dec  3 00:58 agis_schedconf.cvmfs.json
[2025-12-03 05:38:18] drwx------ 5 mf493845 unix-user       440 Dec  3 00:58 pilot3
[2025-12-03 05:38:18] -rw------- 1 mf493845 unix-user 927678547 Dec  3 05:36 HITS.47556173._003510.pool.root.1
[2025-12-03 05:38:18] -rw------- 1 mf493845 unix-user        95 Dec  3 05:36 pilot_heartbeat.json
[2025-12-03 05:38:18] -rw------- 1 mf493845 unix-user      1044 Dec  3 05:37 memory_monitor_summary.json
[2025-12-03 05:38:18] -rw------- 1 mf493845 unix-user   1516240 Dec  3 05:37 agis_ddmendpoints.agis.ALL.json
[2025-12-03 05:38:18] -rw------- 1 mf493845 unix-user   1577264 Dec  3 05:37 log.47556173._003510.job.log.tgz.1
[2025-12-03 05:38:18] -rw------- 1 mf493845 unix-user      8591 Dec  3 05:37 heartbeat.json
[2025-12-03 05:38:18] -rw------- 1 mf493845 unix-user      4835 Dec  3 05:38 pilotlog.txt
[2025-12-03 05:38:18] -rw------- 1 mf493845 unix-user   2430614 Dec  3 05:38 log.47556173._003510.job.log.1
[2025-12-03 05:38:18] -rw------- 1 mf493845 unix-user       353 Dec  3 05:38 output.list
[2025-12-03 05:38:18] -rw------- 1 mf493845 unix-user       620 Dec  3 05:38 runtime_log
[2025-12-03 05:38:18] -rw------- 1 mf493845 unix-user   4024320 Dec  3 05:38 result.tar.gz
[2025-12-03 05:38:18] -rw------- 1 mf493845 unix-user       650 Dec  3 05:38 vQDODm1pmi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmzoNKDmnhX5Km.diag
[2025-12-03 05:38:18] -rw------- 1 mf493845 unix-user      9221 Dec  3 05:38 runtime_log.err
[2025-12-03 05:38:18] -rw------- 1 mf493845 unix-user     21712 Dec  3 05:38 stderr.txt
[2025-12-03 05:38:18] HITS file was successfully produced:
[2025-12-03 05:38:18] -rw------- 1 mf493845 unix-user 927678547 Dec  3 05:36 shared/HITS.pool.root.1
[2025-12-03 05:38:18]  *** Contents of shared directory: ***
[2025-12-03 05:38:18] total 1312444
[2025-12-03 05:38:18] -rw-r--r-- 2 mf493845 unix-user 411622596 Dec  3 00:58 ATLAS.root_0
[2025-12-03 05:38:18] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 00:58 start_atlas.sh
[2025-12-03 05:38:18] -rw-r--r-- 2 mf493845 unix-user    590108 Dec  3 00:58 input.tar.gz
[2025-12-03 05:38:18] -rw------- 1 mf493845 unix-user 927678547 Dec  3 05:36 HITS.pool.root.1
[2025-12-03 05:38:18] -rw------- 1 mf493845 unix-user   4024320 Dec  3 05:38 result.tar.gz
05:38:19 (23153): run_atlas exited; CPU time 123611.184390
05:38:19 (23153): called boinc_finish(0)

</stderr_txt>
]]>

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