Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
00:50:18 (5585): wrapper (7.7.26015): starting
00:50:18 (5585): wrapper: running run_atlas (--nthreads 8)
[2025-12-03 00:50:18] Arguments: --nthreads 8
[2025-12-03 00:50:18] Threads: 8
[2025-12-03 00:50:18] Checking for CVMFS
[2025-12-03 00:50:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 00:50:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 00:50:19] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 00:50:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 00:50:19] 2.11.0.0 4352 75155 93748 153574 3 108 3361004 4096001 2093 130560 1 5368604 99.354 6555274 602 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-03 00:50:19] CVMFS is ok
[2025-12-03 00:50:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-03 00:50:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-03 00:50:19] Further information can be found at the LHC@home message board.
[2025-12-03 00:50:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 00:50:19] Checking for apptainer binary...
[2025-12-03 00:50:19] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-03 00:50:19] apptainer is not installed, using version from CVMFS
[2025-12-03 00:50:19] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 00:50:19] WARNING: Environment variable TMPDIR already has value [/tmp/job_10945834/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node239
[2025-12-03 00:50:19] apptainer works
[2025-12-03 00:50:19] Set ATHENA_PROC_NUMBER=8
[2025-12-03 00:50:19] Set ATHENA_CORE_NUMBER=8
[2025-12-03 00:50:19] Starting ATLAS job with PandaID=6894245528
[2025-12-03 00:50:19] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10945834/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 05:24:20]  *** The last 200 lines of the pilot log: ***
[2025-12-03 05:24:20] 2025-12-03 04:23:47,160 | INFO     | time since job start (16403s) is within the limit (172800.0s)
[2025-12-03 05:24:20] 2025-12-03 04:23:47,543 | INFO     | monitor loop #1199: job 0:6894245528 is in state 'finished'
[2025-12-03 05:24:20] 2025-12-03 04:23:47,543 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 05:24:20] 2025-12-03 04:23:48,436 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 05:24:20] 2025-12-03 04:23:48,440 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2611.187671875
[2025-12-03 05:24:20] 2025-12-03 04:23:48,445 | INFO     | using path: /tmp/job_10945834/atlas/pilot/slots/0/PanDA_Pilot-6894245528/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 05:24:20] 2025-12-03 04:23:48,446 | INFO     | extracted standard info from prmon json
[2025-12-03 05:24:20] 2025-12-03 04:23:48,446 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 05:24:20] 2025-12-03 04:23:48,446 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 05:24:20] 2025-12-03 04:23:48,448 | INFO     | fitting pss+swap vs Time
[2025-12-03 05:24:20] 2025-12-03 04:23:48,448 | INFO     | sum of square deviations: 6035722470.0
[2025-12-03 05:24:20] 2025-12-03 04:23:48,449 | INFO     | sum of deviations: 145332171332.0
[2025-12-03 05:24:20] 2025-12-03 04:23:48,449 | INFO     | mean x: 1764727616.0
[2025-12-03 05:24:20] 2025-12-03 04:23:48,450 | INFO     | mean y: 2881055.1486988845
[2025-12-03 05:24:20] 2025-12-03 04:23:48,450 | INFO     | intersect: -42489413366.53698
[2025-12-03 05:24:20] 2025-12-03 04:23:48,450 | INFO     | chi2: 3.6847592718312963
[2025-12-03 05:24:20] 2025-12-03 04:23:48,450 | INFO     | sum of square deviations: 5705372090.0
[2025-12-03 05:24:20] 2025-12-03 04:23:48,451 | INFO     | sum of deviations: 194909771973.5
[2025-12-03 05:24:20] 2025-12-03 04:23:48,451 | INFO     | mean x: 1764727463.5
[2025-12-03 05:24:20] 2025-12-03 04:23:48,451 | INFO     | mean y: 2903774.609848485
[2025-12-03 05:24:20] 2025-12-03 04:23:48,451 | INFO     | intersect: -60284597562.775856
[2025-12-03 05:24:20] 2025-12-03 04:23:48,451 | INFO     | chi2: 2.1880448508338324
[2025-12-03 05:24:20] 2025-12-03 04:23:48,451 | INFO     | current chi2=2.1880448508338324 (change=40.61905569895231 %)
[2025-12-03 05:24:20] 2025-12-03 04:23:48,451 | INFO     | sum of square deviations: 5387301010.0
[2025-12-03 05:24:20] 2025-12-03 04:23:48,452 | INFO     | sum of deviations: 187976123616.99997
[2025-12-03 05:24:20] 2025-12-03 04:23:48,452 | INFO     | mean x: 1764727311.0
[2025-12-03 05:24:20] 2025-12-03 04:23:48,452 | INFO     | mean y: 2900450.579150579
[2025-12-03 05:24:20] 2025-12-03 04:23:48,453 | INFO     | intersect: -61572756552.26428
[2025-12-03 05:24:20] 2025-12-03 04:23:48,453 | INFO     | chi2: 2.1867673117824213
[2025-12-03 05:24:20] 2025-12-03 04:23:48,453 | INFO     | current chi2=2.1867673117824213 (change=0.05838724242440389 %)
[2025-12-03 05:24:20] 2025-12-03 04:23:48,453 | INFO     | right removable region: 258
[2025-12-03 05:24:20] 2025-12-03 04:23:48,453 | INFO     | sum of square deviations: 5705372090.0
[2025-12-03 05:24:20] 2025-12-03 04:23:48,454 | INFO     | sum of deviations: 77479756065.50002
[2025-12-03 05:24:20] 2025-12-03 04:23:48,454 | INFO     | mean x: 1764727768.5
[2025-12-03 05:24:20] 2025-12-03 04:23:48,454 | INFO     | mean y: 2912200.132575758
[2025-12-03 05:24:20] 2025-12-03 04:23:48,454 | INFO     | intersect: -23962339297.670116
[2025-12-03 05:24:20] 2025-12-03 04:23:48,454 | INFO     | chi2: 1.581677843459865
[2025-12-03 05:24:20] 2025-12-03 04:23:48,454 | INFO     | current chi2=1.581677843459865 (change=57.07513770163379 %)
[2025-12-03 05:24:20] 2025-12-03 04:23:48,454 | INFO     | sum of square deviations: 5387301010.0
[2025-12-03 05:24:20] 2025-12-03 04:23:48,455 | INFO     | sum of deviations: 63991347279.99998
[2025-12-03 05:24:20] 2025-12-03 04:23:48,455 | INFO     | mean x: 1764727921.0
[2025-12-03 05:24:20] 2025-12-03 04:23:48,455 | INFO     | mean y: 2918657.223938224
[2025-12-03 05:24:20] 2025-12-03 04:23:48,455 | INFO     | intersect: -20958842535.960876
[2025-12-03 05:24:20] 2025-12-03 04:23:48,456 | INFO     | chi2: 1.5538564843345042
[2025-12-03 05:24:20] 2025-12-03 04:23:48,456 | INFO     | current chi2=1.5538564843345042 (change=1.758977609783205 %)
[2025-12-03 05:24:20] 2025-12-03 04:23:48,456 | INFO     | left removable region: 20
[2025-12-03 05:24:20] 2025-12-03 04:23:48,456 | INFO     | sum of square deviations: 4180243959.5
[2025-12-03 05:24:20] 2025-12-03 04:23:48,457 | INFO     | sum of deviations: 87739313674.5
[2025-12-03 05:24:20] 2025-12-03 04:23:48,457 | INFO     | mean x: 1764727890.5
[2025-12-03 05:24:20] 2025-12-03 04:23:48,457 | INFO     | mean y: 2950487.382352941
[2025-12-03 05:24:20] 2025-12-03 04:23:48,457 | INFO     | intersect: -37036996327.88394
[2025-12-03 05:24:20] 2025-12-03 04:23:48,457 | INFO     | chi2: 0.018719093446784234
[2025-12-03 05:24:20] 2025-12-03 04:23:48,457 | INFO     | current memory leak: 20.99 B/s (using 238 data points, chi2=0.02)
[2025-12-03 05:24:20] 2025-12-03 04:23:48,457 | INFO     | could have reported an average CPU frequency of 2994 MHz (12 samples)
[2025-12-03 05:24:20] 2025-12-03 04:23:48,457 | INFO     | ..............................
[2025-12-03 05:24:20] 2025-12-03 04:23:48,457 | INFO     | . Timing measurements:
[2025-12-03 05:24:20] 2025-12-03 04:23:48,457 | INFO     | . get job = 0 s
[2025-12-03 05:24:20] 2025-12-03 04:23:48,457 | INFO     | . initial setup = 1 s
[2025-12-03 05:24:20] 2025-12-03 04:23:48,457 | INFO     | . payload setup = 2 s
[2025-12-03 05:24:20] 2025-12-03 04:23:48,457 | INFO     | . stage-in = 0 s
[2025-12-03 05:24:20] 2025-12-03 04:23:48,458 | INFO     | . payload execution = 16382 s
[2025-12-03 05:24:20] 2025-12-03 04:23:48,458 | INFO     | . stage-out = 1 s
[2025-12-03 05:24:20] 2025-12-03 04:23:48,458 | INFO     | . log creation = 0 s
[2025-12-03 05:24:20] 2025-12-03 04:23:48,458 | INFO     | ..............................
[2025-12-03 05:24:20] 2025-12-03 04:23:48,506 | INFO     | 
[2025-12-03 05:24:20] 2025-12-03 04:23:48,506 | INFO     | job summary report
[2025-12-03 05:24:20] 2025-12-03 04:23:48,506 | INFO     | --------------------------------------------------
[2025-12-03 05:24:20] 2025-12-03 04:23:48,506 | INFO     | PanDA job id: 6894245528
[2025-12-03 05:24:20] 2025-12-03 04:23:48,506 | INFO     | task id: 47533962
[2025-12-03 05:24:20] 2025-12-03 04:23:48,506 | INFO     | errors: (none)
[2025-12-03 05:24:20] 2025-12-03 04:23:48,507 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 05:24:20] 2025-12-03 04:23:48,507 | INFO     | pilot state: finished 
[2025-12-03 05:24:20] 2025-12-03 04:23:48,507 | INFO     | transexitcode: 0
[2025-12-03 05:24:20] 2025-12-03 04:23:48,507 | INFO     | exeerrorcode: 0
[2025-12-03 05:24:20] 2025-12-03 04:23:48,507 | INFO     | exeerrordiag: 
[2025-12-03 05:24:20] 2025-12-03 04:23:48,507 | INFO     | exitcode: 0
[2025-12-03 05:24:20] 2025-12-03 04:23:48,507 | INFO     | exitmsg: OK
[2025-12-03 05:24:20] 2025-12-03 04:23:48,507 | INFO     | cpuconsumptiontime: 123763 s
[2025-12-03 05:24:20] 2025-12-03 04:23:48,507 | INFO     | nevents: 1000
[2025-12-03 05:24:20] 2025-12-03 04:23:48,507 | INFO     | neventsw: 0
[2025-12-03 05:24:20] 2025-12-03 04:23:48,507 | INFO     | pid: 22262
[2025-12-03 05:24:20] 2025-12-03 04:23:48,507 | INFO     | pgrp: 22262
[2025-12-03 05:24:20] 2025-12-03 04:23:48,507 | INFO     | corecount: 8
[2025-12-03 05:24:20] 2025-12-03 04:23:48,507 | INFO     | event service: False
[2025-12-03 05:24:20] 2025-12-03 04:23:48,507 | INFO     | sizes: {0: 2283487, 1: 2284469, 3: 2284731, 11: 2284759, 16388: 2317487, 16390: 2326695, 16391: 2326885}
[2025-12-03 05:24:20] 2025-12-03 04:23:48,507 | INFO     | --------------------------------------------------
[2025-12-03 05:24:20] 2025-12-03 04:23:48,507 | INFO     | 
[2025-12-03 05:24:20] 2025-12-03 04:23:48,507 | INFO     | executing command: ls -lF /tmp/job_10945834/atlas/pilot/slots/0
[2025-12-03 05:24:20] 2025-12-03 04:23:48,516 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 05:24:20] 2025-12-03 04:23:48,516 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 05:24:20] 2025-12-03 04:23:48,516 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 05:24:20] 2025-12-03 04:23:48,516 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 05:24:20] 2025-12-03 04:23:48,516 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 05:24:20] 2025-12-03 04:23:48,516 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 05:24:20] 2025-12-03 04:23:48,516 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 05:24:20] 2025-12-03 04:23:48,516 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 05:24:20] 2025-12-03 04:23:48,516 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 05:24:20] 2025-12-03 04:23:48,516 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 05:24:20] 2025-12-03 04:23:48,516 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 05:24:20] 2025-12-03 04:23:48,516 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 05:24:20] 2025-12-03 04:23:48,516 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 05:24:20] 2025-12-03 04:23:48,516 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 05:24:20] 2025-12-03 04:23:48,516 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 05:24:20] 2025-12-03 04:23:48,517 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 05:24:20] 2025-12-03 04:23:48,517 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 05:24:20] 2025-12-03 04:23:48,517 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 05:24:20] 2025-12-03 04:23:48,517 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 05:24:20] 2025-12-03 04:23:48,517 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 05:24:20] 2025-12-03 04:23:48,517 | INFO     | job 6894245528 has completed (purged errors)
[2025-12-03 05:24:20] 2025-12-03 04:23:48,517 | INFO     | overall cleanup function is called
[2025-12-03 05:24:20] 2025-12-03 04:23:49,524 | INFO     | --- collectZombieJob: --- 10, [22262]
[2025-12-03 05:24:20] 2025-12-03 04:23:49,524 | INFO     | zombie collector waiting for pid 22262
[2025-12-03 05:24:20] 2025-12-03 04:23:49,524 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 05:24:20] 2025-12-03 04:23:49,524 | INFO     | collected zombie processes
[2025-12-03 05:24:20] 2025-12-03 04:23:49,524 | INFO     | will attempt to kill all subprocesses of pid=22262
[2025-12-03 05:24:20] 2025-12-03 04:23:49,624 | INFO     | process IDs to be killed: [22262] (in reverse order)
[2025-12-03 05:24:20] 2025-12-03 04:23:49,664 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 05:24:20] 2025-12-03 04:23:49,664 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 05:24:20] 2025-12-03 04:23:49,668 | INFO     | did not find any defunct processes belonging to 22262
[2025-12-03 05:24:20] 2025-12-03 04:23:49,671 | INFO     | did not find any defunct processes belonging to 22262
[2025-12-03 05:24:20] 2025-12-03 04:23:49,672 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 05:24:20] 2025-12-03 04:23:49,672 | INFO     | ready for new job
[2025-12-03 05:24:20] 2025-12-03 04:23:49,672 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 05:24:20] 2025-12-03 04:23:49,673 | INFO     | ***************************************
[2025-12-03 05:24:20] 2025-12-03 04:23:49,673 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 05:24:20] 2025-12-03 04:23:49,673 | INFO     | ***************************************
[2025-12-03 05:24:20] 2025-12-03 04:23:49,673 | INFO     | 
[2025-12-03 05:24:20] 2025-12-03 04:23:49,686 | INFO     | architecture information:
[2025-12-03 05:24:20] 2025-12-03 04:23:49,686 | INFO     | executing command: cat /etc/os-release
[2025-12-03 05:24:20] 2025-12-03 04:23:49,692 | INFO     | cat /etc/os-release:
[2025-12-03 05:24:20] NAME="CentOS Linux"
[2025-12-03 05:24:20] VERSION="7 (Core)"
[2025-12-03 05:24:20] ID="centos"
[2025-12-03 05:24:20] ID_LIKE="rhel fedora"
[2025-12-03 05:24:20] VERSION_ID="7"
[2025-12-03 05:24:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 05:24:20] ANSI_COLOR="0;31"
[2025-12-03 05:24:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 05:24:20] HOME_URL="https://www.centos.org/"
[2025-12-03 05:24:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 05:24:20] 
[2025-12-03 05:24:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 05:24:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 05:24:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 05:24:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 05:24:20] 
[2025-12-03 05:24:20] 2025-12-03 04:23:49,692 | INFO     | ***************************************
[2025-12-03 05:24:20] 2025-12-03 04:23:50,195 | INFO     | executing command: df -mP /tmp/job_10945834/atlas/pilot/slots/0
[2025-12-03 05:24:20] 2025-12-03 04:23:50,202 | INFO     | sufficient remaining disk space (218260045824 B)
[2025-12-03 05:24:20] 2025-12-03 04:23:50,202 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 05:24:20] 2025-12-03 04:23:50,202 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 05:24:20] 2025-12-03 04:23:50,202 | INFO     | update_server=False
[2025-12-03 05:24:20] 2025-12-03 04:23:50,202 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 05:24:20] 2025-12-03 04:23:50,202 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 05:24:20] 2025-12-03 04:23:50,202 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 05:24:20] 2025-12-03 04:23:50,677 | INFO     | all data control threads have been joined
[2025-12-03 05:24:20] 2025-12-03 04:23:50,866 | INFO     | all payload control threads have been joined
[2025-12-03 05:24:20] 2025-12-03 04:23:51,050 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 05:24:20] 2025-12-03 04:23:51,050 | INFO     | aborting loop
[2025-12-03 05:24:20] 2025-12-03 04:23:51,134 | INFO     | [monitor] cgroup control has ended
[2025-12-03 05:24:20] 2025-12-03 04:23:51,207 | INFO     | [job] retrieve thread has finished
[2025-12-03 05:24:20] 2025-12-03 04:23:51,207 | INFO     | [job] queue monitor thread has finished
[2025-12-03 05:24:20] 2025-12-03 04:23:51,240 | INFO     | [payload] validate_post thread has finished
[2025-12-03 05:24:20] 2025-12-03 04:23:51,518 | INFO     | [payload] failed_post thread has finished
[2025-12-03 05:24:20] 2025-12-03 04:23:51,523 | INFO     | all job control threads have been joined
[2025-12-03 05:24:20] 2025-12-03 04:23:51,677 | INFO     | [data] control thread has finished
[2025-12-03 05:24:20] 2025-12-03 04:23:51,871 | INFO     | [payload] control thread has finished
[2025-12-03 05:24:20] 2025-12-03 04:23:51,905 | INFO     | [job] validate thread has finished
[2025-12-03 05:24:20] 2025-12-03 04:23:51,930 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 05:24:20] 2025-12-03 04:23:51,940 | INFO     | [data] copytool_in thread has finished
[2025-12-03 05:24:20] 2025-12-03 04:23:52,053 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 05:24:20] 2025-12-03 04:23:52,055 | INFO     | [job] job monitor thread has finished
[2025-12-03 05:24:20] 2025-12-03 04:23:52,207 | INFO     | [data] copytool_out thread has finished
[2025-12-03 05:24:20] 2025-12-03 04:23:52,394 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 05:24:20] 2025-12-03 04:23:52,423 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 05:24:20] 2025-12-03 04:23:52,528 | INFO     | [job] control thread has finished
[2025-12-03 05:24:20] 2025-12-03 04:23:52,710 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 05:24:20] 2025-12-03 04:23:56,715 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 05:24:20] 2025-12-03 04:23:57,383 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456054515456)>']
[2025-12-03 05:24:20] 2025-12-03 04:24:02,408 | INFO     | all workflow threads have been joined
[2025-12-03 05:24:20] 2025-12-03 04:24:02,408 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 05:24:20] 2025-12-03 04:24:02,409 | INFO     | traces error code: 0
[2025-12-03 05:24:20] 2025-12-03 04:24:02,409 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 05:24:20] 2025-12-03 04:24:20,350 | INFO     | PID=9500 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-03 05:24:20] 2025-12-03 04:24:20,350 | INFO     | .. there are 4 such processes running
[2025-12-03 05:24:20] 2025-12-03 04:24:20,350 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 05:24:20] 2025-12-03 04:24:20,351 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 05:24:20] 2025-12-03 04:24:20,351 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 05:24:20] 2025-12-03 04:24:20,351 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 05:24:20] 2025-12-03 04:24:20,351 | INFO     | [monitor] control thread has ended
[2025-12-03 05:24:20] 2025-12-03 04:24:20,404 [wrapper] ==== pilot stdout END ====
[2025-12-03 05:24:20] 2025-12-03 04:24:20,405 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 05:24:20] 2025-12-03 04:24:20,407 [wrapper] pilotpid: 9500
[2025-12-03 05:24:20] 2025-12-03 04:24:20,408 [wrapper] Pilot exit status: 0
[2025-12-03 05:24:20] 2025-12-03 04:24:20,411 [wrapper] pandaids: 6894245528
[2025-12-03 05:24:20] 2025-12-03 04:24:20,435 [wrapper] cleanup supervisor_pilot  7935 9501
[2025-12-03 05:24:20] 2025-12-03 04:24:20,436 [wrapper] Test setup, not cleaning
[2025-12-03 05:24:20] 2025-12-03 04:24:20,438 [wrapper] apfmon messages muted
[2025-12-03 05:24:20] 2025-12-03 04:24:20,439 [wrapper] ==== wrapper stdout END ====
[2025-12-03 05:24:20] 2025-12-03 04:24:20,440 [wrapper] ==== wrapper stderr END ====
[2025-12-03 05:24:20]  *** Error codes and diagnostics ***
[2025-12-03 05:24:20]     "exeErrorCode": 0,
[2025-12-03 05:24:20]     "exeErrorDiag": "",
[2025-12-03 05:24:20]     "pilotErrorCode": 0,
[2025-12-03 05:24:20]     "pilotErrorDiag": "",
[2025-12-03 05:24:20]  *** Listing of results directory ***
[2025-12-03 05:24:20] total 1302764
[2025-12-03 05:24:20] -rw------- 1 mf493845 unix-user    598293 Nov  6 09:41 pilot3.tar.gz
[2025-12-03 05:24:20] -rwx------ 1 mf493845 unix-user     36292 Nov 27 02:28 runpilot2-wrapper.sh
[2025-12-03 05:24:20] -rw------- 1 mf493845 unix-user      5112 Nov 27 02:31 queuedata.json
[2025-12-03 05:24:20] -rw------- 1 mf493845 unix-user       100 Dec  2 23:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 05:24:20] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  2 23:05 run_atlas
[2025-12-03 05:24:20] -rw------- 1 mf493845 unix-user       105 Dec  2 23:05 job.xml
[2025-12-03 05:24:20] -rw-r--r-- 2 mf493845 unix-user 412479023 Dec  3 00:50 EVNT.47493127._001021.pool.root.1
[2025-12-03 05:24:20] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 00:50 start_atlas.sh
[2025-12-03 05:24:20] drwxrwx--x 2 mf493845 unix-user       100 Dec  3 00:50 shared
[2025-12-03 05:24:20] -rw-r--r-- 2 mf493845 unix-user    611286 Dec  3 00:50 input.tar.gz
[2025-12-03 05:24:20] -rw------- 1 mf493845 unix-user      6391 Dec  3 00:50 init_data.xml
[2025-12-03 05:24:20] -rw------- 1 mf493845 unix-user         0 Dec  3 00:50 boinc_setup_complete
[2025-12-03 05:24:20] -rw------- 1 mf493845 unix-user      8192 Dec  3 00:50 boinc_mmap_file
[2025-12-03 05:24:20] -rw------- 1 mf493845 unix-user         0 Dec  3 00:50 boinc_lockfile
[2025-12-03 05:24:20] -rw------- 1 mf493845 unix-user      2787 Dec  3 00:50 pandaJob.out
[2025-12-03 05:24:20] -rw------- 1 mf493845 unix-user    989284 Dec  3 00:50 agis_schedconf.cvmfs.json
[2025-12-03 05:24:20] drwx------ 7 mf493845 unix-user       580 Dec  3 00:50 pilot3
[2025-12-03 05:24:20] -rw------- 1 mf493845 unix-user 909735185 Dec  3 05:23 HITS.47533962._000210.pool.root.1
[2025-12-03 05:24:20] -rw------- 1 mf493845 unix-user        95 Dec  3 05:23 pilot_heartbeat.json
[2025-12-03 05:24:20] -rw------- 1 mf493845 unix-user      1031 Dec  3 05:23 memory_monitor_summary.json
[2025-12-03 05:24:20] -rw------- 1 mf493845 unix-user   1516240 Dec  3 05:23 agis_ddmendpoints.agis.ALL.json
[2025-12-03 05:24:20] -rw------- 1 mf493845 unix-user   1570858 Dec  3 05:23 log.47533962._000210.job.log.tgz.1
[2025-12-03 05:24:20] -rw------- 1 mf493845 unix-user      8573 Dec  3 05:23 heartbeat.json
[2025-12-03 05:24:20] -rw------- 1 mf493845 unix-user       819 Dec  3 05:24 pilotlog.txt
[2025-12-03 05:24:20] -rw------- 1 mf493845 unix-user   2372339 Dec  3 05:24 log.47533962._000210.job.log.1
[2025-12-03 05:24:20] -rw------- 1 mf493845 unix-user       353 Dec  3 05:24 output.list
[2025-12-03 05:24:20] -rw------- 1 mf493845 unix-user       620 Dec  3 05:24 runtime_log
[2025-12-03 05:24:20] -rw------- 1 mf493845 unix-user   3962880 Dec  3 05:24 result.tar.gz
[2025-12-03 05:24:20] -rw------- 1 mf493845 unix-user      9221 Dec  3 05:24 runtime_log.err
[2025-12-03 05:24:20] -rw------- 1 mf493845 unix-user       650 Dec  3 05:24 cpLNDmlzfi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmPdNKDm1eHJOm.diag
[2025-12-03 05:24:20] -rw------- 1 mf493845 unix-user     21698 Dec  3 05:24 stderr.txt
[2025-12-03 05:24:20] HITS file was successfully produced:
[2025-12-03 05:24:20] -rw------- 1 mf493845 unix-user 909735185 Dec  3 05:23 shared/HITS.pool.root.1
[2025-12-03 05:24:20]  *** Contents of shared directory: ***
[2025-12-03 05:24:20] total 1295716
[2025-12-03 05:24:20] -rw-r--r-- 2 mf493845 unix-user 412479023 Dec  3 00:50 ATLAS.root_0
[2025-12-03 05:24:20] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 00:50 start_atlas.sh
[2025-12-03 05:24:20] -rw-r--r-- 2 mf493845 unix-user    611286 Dec  3 00:50 input.tar.gz
[2025-12-03 05:24:20] -rw------- 1 mf493845 unix-user 909735185 Dec  3 05:23 HITS.pool.root.1
[2025-12-03 05:24:20] -rw------- 1 mf493845 unix-user   3962880 Dec  3 05:24 result.tar.gz
05:24:21 (5585): run_atlas exited; CPU time 123979.243049
05:24:21 (5585): called boinc_finish(0)

</stderr_txt>
]]>

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