Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
00:30:07 (14395): wrapper (7.7.26015): starting
00:30:07 (14395): wrapper: running run_atlas (--nthreads 8)
[2025-12-03 00:30:07] Arguments: --nthreads 8
[2025-12-03 00:30:07] Threads: 8
[2025-12-03 00:30:07] Checking for CVMFS
[2025-12-03 00:30:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 00:30:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 00:30:07] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 00:30:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 00:30:08] 2.11.0.0 3932 75133 87916 153574 1 11 2794871 4096001 917 130560 2 6072587 99.581 4389979 449 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-03 00:30:08] CVMFS is ok
[2025-12-03 00:30:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-03 00:30:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-03 00:30:08] Further information can be found at the LHC@home message board.
[2025-12-03 00:30:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 00:30:08] Checking for apptainer binary...
[2025-12-03 00:30:08] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-03 00:30:08] apptainer is not installed, using version from CVMFS
[2025-12-03 00:30:08] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 00:30:08] WARNING: Environment variable TMPDIR already has value [/tmp/job_10945830/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node238
[2025-12-03 00:30:08] apptainer works
[2025-12-03 00:30:08] Set ATHENA_PROC_NUMBER=8
[2025-12-03 00:30:08] Set ATHENA_CORE_NUMBER=8
[2025-12-03 00:30:08] Starting ATLAS job with PandaID=6895234486
[2025-12-03 00:30:08] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10945830/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 04:21:41]  *** The last 200 lines of the pilot log: ***
[2025-12-03 04:21:41] 2025-12-03 03:21:02,261 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 04:21:41] 2025-12-03 03:21:02,751 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 04:21:41] 2025-12-03 03:21:02,768 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2998.2181875
[2025-12-03 04:21:41] 2025-12-03 03:21:02,773 | INFO     | using path: /tmp/job_10945830/atlas/pilot/slots/0/PanDA_Pilot-6895234486/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 04:21:41] 2025-12-03 03:21:02,773 | INFO     | extracted standard info from prmon json
[2025-12-03 04:21:41] 2025-12-03 03:21:02,773 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 04:21:41] 2025-12-03 03:21:02,773 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 04:21:41] 2025-12-03 03:21:02,776 | INFO     | fitting pss+swap vs Time
[2025-12-03 04:21:41] 2025-12-03 03:21:02,776 | INFO     | sum of square deviations: 3579276412.5
[2025-12-03 04:21:41] 2025-12-03 03:21:02,777 | INFO     | sum of deviations: 844894850859.9998
[2025-12-03 04:21:41] 2025-12-03 03:21:02,777 | INFO     | mean x: 1764725157.5
[2025-12-03 04:21:41] 2025-12-03 03:21:02,777 | INFO     | mean y: 4343707.575221239
[2025-12-03 04:21:41] 2025-12-03 03:21:02,777 | INFO     | intersect: -416562310252.92053
[2025-12-03 04:21:41] 2025-12-03 03:21:02,777 | INFO     | chi2: 6.069976004619134
[2025-12-03 04:21:41] 2025-12-03 03:21:02,777 | INFO     | sum of square deviations: 3346927870.0
[2025-12-03 04:21:41] 2025-12-03 03:21:02,778 | INFO     | sum of deviations: 895752051826.0
[2025-12-03 04:21:41] 2025-12-03 03:21:02,778 | INFO     | mean x: 1764725005.0
[2025-12-03 04:21:41] 2025-12-03 03:21:02,778 | INFO     | mean y: 4376536.959276018
[2025-12-03 04:21:41] 2025-12-03 03:21:02,778 | INFO     | intersect: -472296224353.3127
[2025-12-03 04:21:41] 2025-12-03 03:21:02,778 | INFO     | chi2: 4.251950229232509
[2025-12-03 04:21:41] 2025-12-03 03:21:02,778 | INFO     | current chi2=4.251950229232509 (change=29.951119642040467 %)
[2025-12-03 04:21:41] 2025-12-03 03:21:02,779 | INFO     | sum of square deviations: 3124858590.0
[2025-12-03 04:21:41] 2025-12-03 03:21:02,779 | INFO     | sum of deviations: 842422070344.5
[2025-12-03 04:21:41] 2025-12-03 03:21:02,779 | INFO     | mean x: 1764724852.5
[2025-12-03 04:21:41] 2025-12-03 03:21:02,779 | INFO     | mean y: 4339916.458333333
[2025-12-03 04:21:41] 2025-12-03 03:21:02,779 | INFO     | intersect: -475743000647.6606
[2025-12-03 04:21:41] 2025-12-03 03:21:02,780 | INFO     | chi2: 4.264661746530361
[2025-12-03 04:21:41] 2025-12-03 03:21:02,780 | INFO     | current chi2=4.264661746530361 (change=-0.2989573398686394 %)
[2025-12-03 04:21:41] 2025-12-03 03:21:02,780 | INFO     | right removable region: 215
[2025-12-03 04:21:41] 2025-12-03 03:21:02,780 | INFO     | sum of square deviations: 3346927870.0
[2025-12-03 04:21:41] 2025-12-03 03:21:02,780 | INFO     | sum of deviations: 712036864036.0001
[2025-12-03 04:21:41] 2025-12-03 03:21:02,781 | INFO     | mean x: 1764725310.0
[2025-12-03 04:21:41] 2025-12-03 03:21:02,781 | INFO     | mean y: 4430830.583710407
[2025-12-03 04:21:41] 2025-12-03 03:21:02,781 | INFO     | intersect: -375429257741.06696
[2025-12-03 04:21:41] 2025-12-03 03:21:02,781 | INFO     | chi2: 2.4779469294942853
[2025-12-03 04:21:41] 2025-12-03 03:21:02,781 | INFO     | current chi2=2.4779469294942853 (change=59.176989701300045 %)
[2025-12-03 04:21:41] 2025-12-03 03:21:02,781 | INFO     | sum of square deviations: 3124858590.0
[2025-12-03 04:21:41] 2025-12-03 03:21:02,782 | INFO     | sum of deviations: 656678917516.0
[2025-12-03 04:21:41] 2025-12-03 03:21:02,782 | INFO     | mean x: 1764725462.5
[2025-12-03 04:21:41] 2025-12-03 03:21:02,782 | INFO     | mean y: 4468715.305555556
[2025-12-03 04:21:41] 2025-12-03 03:21:02,782 | INFO     | intersect: -370846874809.78577
[2025-12-03 04:21:41] 2025-12-03 03:21:02,782 | INFO     | chi2: 2.285443147695788
[2025-12-03 04:21:41] 2025-12-03 03:21:02,782 | INFO     | current chi2=2.285443147695788 (change=7.768680576132627 %)
[2025-12-03 04:21:41] 2025-12-03 03:21:02,782 | INFO     | left removable region: 20
[2025-12-03 04:21:41] 2025-12-03 03:21:02,782 | INFO     | sum of square deviations: 2299168690.0
[2025-12-03 04:21:41] 2025-12-03 03:21:02,783 | INFO     | sum of deviations: 580118542135.0
[2025-12-03 04:21:41] 2025-12-03 03:21:02,783 | INFO     | mean x: 1764725432.0
[2025-12-03 04:21:41] 2025-12-03 03:21:02,783 | INFO     | mean y: 4523797.784615384
[2025-12-03 04:21:41] 2025-12-03 03:21:02,783 | INFO     | intersect: -445265085749.8289
[2025-12-03 04:21:41] 2025-12-03 03:21:02,783 | INFO     | chi2: 0.23737540343366045
[2025-12-03 04:21:41] 2025-12-03 03:21:02,783 | INFO     | current memory leak: 252.32 B/s (using 195 data points, chi2=0.24)
[2025-12-03 04:21:41] 2025-12-03 03:21:02,783 | INFO     | could have reported an average CPU frequency of 2935 MHz (11 samples)
[2025-12-03 04:21:41] 2025-12-03 03:21:02,783 | INFO     | ..............................
[2025-12-03 04:21:41] 2025-12-03 03:21:02,783 | INFO     | . Timing measurements:
[2025-12-03 04:21:41] 2025-12-03 03:21:02,783 | INFO     | . get job = 0 s
[2025-12-03 04:21:41] 2025-12-03 03:21:02,784 | INFO     | . initial setup = 1 s
[2025-12-03 04:21:41] 2025-12-03 03:21:02,784 | INFO     | . payload setup = 67 s
[2025-12-03 04:21:41] 2025-12-03 03:21:02,784 | INFO     | . stage-in = 0 s
[2025-12-03 04:21:41] 2025-12-03 03:21:02,784 | INFO     | . payload execution = 13757 s
[2025-12-03 04:21:41] 2025-12-03 03:21:02,784 | INFO     | . stage-out = 1 s
[2025-12-03 04:21:41] 2025-12-03 03:21:02,784 | INFO     | . log creation = 0 s
[2025-12-03 04:21:41] 2025-12-03 03:21:02,784 | INFO     | ..............................
[2025-12-03 04:21:41] 2025-12-03 03:21:02,833 | INFO     | 
[2025-12-03 04:21:41] 2025-12-03 03:21:02,833 | INFO     | job summary report
[2025-12-03 04:21:41] 2025-12-03 03:21:02,833 | INFO     | --------------------------------------------------
[2025-12-03 04:21:41] 2025-12-03 03:21:02,833 | INFO     | PanDA job id: 6895234486
[2025-12-03 04:21:41] 2025-12-03 03:21:02,833 | INFO     | task id: 47530725
[2025-12-03 04:21:41] 2025-12-03 03:21:02,833 | INFO     | errors: (none)
[2025-12-03 04:21:41] 2025-12-03 03:21:02,833 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 04:21:41] 2025-12-03 03:21:02,833 | INFO     | pilot state: finished 
[2025-12-03 04:21:41] 2025-12-03 03:21:02,833 | INFO     | transexitcode: 0
[2025-12-03 04:21:41] 2025-12-03 03:21:02,833 | INFO     | exeerrorcode: 0
[2025-12-03 04:21:41] 2025-12-03 03:21:02,833 | INFO     | exeerrordiag: 
[2025-12-03 04:21:41] 2025-12-03 03:21:02,833 | INFO     | exitcode: 0
[2025-12-03 04:21:41] 2025-12-03 03:21:02,833 | INFO     | exitmsg: OK
[2025-12-03 04:21:41] 2025-12-03 03:21:02,833 | INFO     | cpuconsumptiontime: 102435 s
[2025-12-03 04:21:41] 2025-12-03 03:21:02,833 | INFO     | nevents: 1000
[2025-12-03 04:21:41] 2025-12-03 03:21:02,833 | INFO     | neventsw: 0
[2025-12-03 04:21:41] 2025-12-03 03:21:02,833 | INFO     | pid: 25530
[2025-12-03 04:21:41] 2025-12-03 03:21:02,833 | INFO     | pgrp: 25530
[2025-12-03 04:21:41] 2025-12-03 03:21:02,833 | INFO     | corecount: 8
[2025-12-03 04:21:41] 2025-12-03 03:21:02,833 | INFO     | event service: False
[2025-12-03 04:21:41] 2025-12-03 03:21:02,833 | INFO     | sizes: {0: 2284588, 2: 2284850, 11: 2284878, 13828: 2333853, 13829: 2333852, 13830: 2342932, 13833: 2343116, 13837: 2343390}
[2025-12-03 04:21:41] 2025-12-03 03:21:02,833 | INFO     | --------------------------------------------------
[2025-12-03 04:21:41] 2025-12-03 03:21:02,834 | INFO     | 
[2025-12-03 04:21:41] 2025-12-03 03:21:02,834 | INFO     | executing command: ls -lF /tmp/job_10945830/atlas/pilot/slots/0
[2025-12-03 04:21:41] 2025-12-03 03:21:02,843 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 04:21:41] 2025-12-03 03:21:02,843 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 04:21:41] 2025-12-03 03:21:02,843 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 04:21:41] 2025-12-03 03:21:02,843 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 04:21:41] 2025-12-03 03:21:02,843 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 04:21:41] 2025-12-03 03:21:02,843 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 04:21:41] 2025-12-03 03:21:02,844 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 04:21:41] 2025-12-03 03:21:02,844 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 04:21:41] 2025-12-03 03:21:02,844 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 04:21:41] 2025-12-03 03:21:02,844 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 04:21:41] 2025-12-03 03:21:02,844 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 04:21:41] 2025-12-03 03:21:02,844 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 04:21:41] 2025-12-03 03:21:02,844 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 04:21:41] 2025-12-03 03:21:02,844 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 04:21:41] 2025-12-03 03:21:02,844 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 04:21:41] 2025-12-03 03:21:02,844 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 04:21:41] 2025-12-03 03:21:02,844 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 04:21:41] 2025-12-03 03:21:02,844 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 04:21:41] 2025-12-03 03:21:02,844 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 04:21:41] 2025-12-03 03:21:02,844 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 04:21:41] 2025-12-03 03:21:02,844 | INFO     | job 6895234486 has completed (purged errors)
[2025-12-03 04:21:41] 2025-12-03 03:21:02,844 | INFO     | overall cleanup function is called
[2025-12-03 04:21:41] 2025-12-03 03:21:03,852 | INFO     | --- collectZombieJob: --- 10, [25530]
[2025-12-03 04:21:41] 2025-12-03 03:21:03,852 | INFO     | zombie collector waiting for pid 25530
[2025-12-03 04:21:41] 2025-12-03 03:21:03,852 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 04:21:41] 2025-12-03 03:21:03,852 | INFO     | collected zombie processes
[2025-12-03 04:21:41] 2025-12-03 03:21:03,852 | INFO     | will attempt to kill all subprocesses of pid=25530
[2025-12-03 04:21:41] 2025-12-03 03:21:03,968 | INFO     | process IDs to be killed: [25530] (in reverse order)
[2025-12-03 04:21:41] 2025-12-03 03:21:04,013 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 04:21:41] 2025-12-03 03:21:04,013 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 04:21:41] 2025-12-03 03:21:04,018 | INFO     | did not find any defunct processes belonging to 25530
[2025-12-03 04:21:41] 2025-12-03 03:21:04,021 | INFO     | did not find any defunct processes belonging to 25530
[2025-12-03 04:21:41] 2025-12-03 03:21:04,022 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 04:21:41] 2025-12-03 03:21:04,022 | INFO     | ready for new job
[2025-12-03 04:21:41] 2025-12-03 03:21:04,022 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 04:21:41] 2025-12-03 03:21:04,023 | INFO     | ***************************************
[2025-12-03 04:21:41] 2025-12-03 03:21:04,023 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 04:21:41] 2025-12-03 03:21:04,023 | INFO     | ***************************************
[2025-12-03 04:21:41] 2025-12-03 03:21:04,023 | INFO     | 
[2025-12-03 04:21:41] 2025-12-03 03:21:04,037 | INFO     | architecture information:
[2025-12-03 04:21:41] 2025-12-03 03:21:04,038 | INFO     | executing command: cat /etc/os-release
[2025-12-03 04:21:41] 2025-12-03 03:21:04,044 | INFO     | cat /etc/os-release:
[2025-12-03 04:21:41] NAME="CentOS Linux"
[2025-12-03 04:21:41] VERSION="7 (Core)"
[2025-12-03 04:21:41] ID="centos"
[2025-12-03 04:21:41] ID_LIKE="rhel fedora"
[2025-12-03 04:21:41] VERSION_ID="7"
[2025-12-03 04:21:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 04:21:41] ANSI_COLOR="0;31"
[2025-12-03 04:21:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 04:21:41] HOME_URL="https://www.centos.org/"
[2025-12-03 04:21:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 04:21:41] 
[2025-12-03 04:21:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 04:21:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 04:21:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 04:21:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 04:21:41] 
[2025-12-03 04:21:41] 2025-12-03 03:21:04,044 | INFO     | ***************************************
[2025-12-03 04:21:41] 2025-12-03 03:21:04,547 | INFO     | executing command: df -mP /tmp/job_10945830/atlas/pilot/slots/0
[2025-12-03 04:21:41] 2025-12-03 03:21:04,554 | INFO     | sufficient remaining disk space (218666893312 B)
[2025-12-03 04:21:41] 2025-12-03 03:21:04,554 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 04:21:41] 2025-12-03 03:21:04,554 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 04:21:41] 2025-12-03 03:21:04,554 | INFO     | update_server=False
[2025-12-03 04:21:41] 2025-12-03 03:21:04,554 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 04:21:41] 2025-12-03 03:21:04,554 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 04:21:41] 2025-12-03 03:21:04,554 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 04:21:41] 2025-12-03 03:21:04,763 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-03 04:21:41] 2025-12-03 03:21:04,763 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-03 04:21:41] 2025-12-03 03:21:04,763 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 04:21:41] 2025-12-03 03:21:04,763 | INFO     | will abort loop
[2025-12-03 04:21:41] 2025-12-03 03:21:05,141 | INFO     | all job control threads have been joined
[2025-12-03 04:21:41] 2025-12-03 03:21:05,151 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 04:21:41] 2025-12-03 03:21:05,262 | INFO     | all payload control threads have been joined
[2025-12-03 04:21:41] 2025-12-03 03:21:05,559 | INFO     | [job] retrieve thread has finished
[2025-12-03 04:21:41] 2025-12-03 03:21:05,560 | INFO     | [job] queue monitor thread has finished
[2025-12-03 04:21:41] 2025-12-03 03:21:05,651 | INFO     | all data control threads have been joined
[2025-12-03 04:21:41] 2025-12-03 03:21:05,768 | INFO     | [job] job monitor thread has finished
[2025-12-03 04:21:41] 2025-12-03 03:21:05,865 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 04:21:41] 2025-12-03 03:21:06,037 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 04:21:41] 2025-12-03 03:21:06,146 | INFO     | [job] control thread has finished
[2025-12-03 04:21:41] 2025-12-03 03:21:06,244 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 04:21:41] 2025-12-03 03:21:06,267 | INFO     | [payload] control thread has finished
[2025-12-03 04:21:41] 2025-12-03 03:21:06,364 | INFO     | [job] validate thread has finished
[2025-12-03 04:21:41] 2025-12-03 03:21:06,364 | INFO     | [data] copytool_in thread has finished
[2025-12-03 04:21:41] 2025-12-03 03:21:06,390 | INFO     | [payload] failed_post thread has finished
[2025-12-03 04:21:41] 2025-12-03 03:21:06,560 | INFO     | [data] copytool_out thread has finished
[2025-12-03 04:21:41] 2025-12-03 03:21:06,656 | INFO     | [data] control thread has finished
[2025-12-03 04:21:41] 2025-12-03 03:21:07,025 | INFO     | [payload] validate_post thread has finished
[2025-12-03 04:21:41] 2025-12-03 03:21:07,026 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 04:21:41] 2025-12-03 03:21:09,156 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 04:21:41] 2025-12-03 03:21:34,735 | INFO     | PID=18143 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-03 04:21:41] 2025-12-03 03:21:34,735 | INFO     | .. there are 7 such processes running
[2025-12-03 04:21:41] 2025-12-03 03:21:34,735 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 04:21:41] 2025-12-03 03:21:34,735 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 04:21:41] 2025-12-03 03:21:34,735 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 04:21:41] 2025-12-03 03:21:35,909 | INFO     | [monitor] cgroup control has ended
[2025-12-03 04:21:41] 2025-12-03 03:21:36,691 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456060819200)>']
[2025-12-03 04:21:41] 2025-12-03 03:21:36,745 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 04:21:41] 2025-12-03 03:21:36,745 | INFO     | [monitor] control thread has ended
[2025-12-03 04:21:41] 2025-12-03 03:21:41,717 | INFO     | all workflow threads have been joined
[2025-12-03 04:21:41] 2025-12-03 03:21:41,717 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 04:21:41] 2025-12-03 03:21:41,717 | INFO     | traces error code: 0
[2025-12-03 04:21:41] 2025-12-03 03:21:41,717 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 04:21:41] 2025-12-03 03:21:41,771 [wrapper] ==== pilot stdout END ====
[2025-12-03 04:21:41] 2025-12-03 03:21:41,773 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 04:21:41] 2025-12-03 03:21:41,774 [wrapper] pilotpid: 18143
[2025-12-03 04:21:41] 2025-12-03 03:21:41,775 [wrapper] Pilot exit status: 0
[2025-12-03 04:21:41] 2025-12-03 03:21:41,780 [wrapper] pandaids: 6895234486
[2025-12-03 04:21:41] 2025-12-03 03:21:41,805 [wrapper] cleanup supervisor_pilot 29213 18144
[2025-12-03 04:21:41] 2025-12-03 03:21:41,807 [wrapper] Test setup, not cleaning
[2025-12-03 04:21:41] 2025-12-03 03:21:41,808 [wrapper] apfmon messages muted
[2025-12-03 04:21:41] 2025-12-03 03:21:41,809 [wrapper] ==== wrapper stdout END ====
[2025-12-03 04:21:41] 2025-12-03 03:21:41,810 [wrapper] ==== wrapper stderr END ====
[2025-12-03 04:21:41]  *** Error codes and diagnostics ***
[2025-12-03 04:21:41]     "exeErrorCode": 0,
[2025-12-03 04:21:41]     "exeErrorDiag": "",
[2025-12-03 04:21:41]     "pilotErrorCode": 0,
[2025-12-03 04:21:41]     "pilotErrorDiag": "",
[2025-12-03 04:21:41]  *** Listing of results directory ***
[2025-12-03 04:21:41] total 1042304
[2025-12-03 04:21:41] -rw------- 1 mf493845 unix-user      5112 Nov 28 11:28 queuedata.json
[2025-12-03 04:21:41] -rw------- 1 mf493845 unix-user    576529 Nov 28 11:28 pilot3.tar.gz
[2025-12-03 04:21:41] -rwx------ 1 mf493845 unix-user     36292 Nov 28 11:28 runpilot2-wrapper.sh
[2025-12-03 04:21:41] -rw------- 1 mf493845 unix-user       100 Dec  2 22:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 04:21:41] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  2 22:55 run_atlas
[2025-12-03 04:21:41] -rw------- 1 mf493845 unix-user       105 Dec  2 22:55 job.xml
[2025-12-03 04:21:41] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 00:30 start_atlas.sh
[2025-12-03 04:21:41] drwxrwx--x 2 mf493845 unix-user       100 Dec  3 00:30 shared
[2025-12-03 04:21:41] -rw-r--r-- 2 mf493845 unix-user    590116 Dec  3 00:30 input.tar.gz
[2025-12-03 04:21:41] -rw------- 1 mf493845 unix-user      6392 Dec  3 00:30 init_data.xml
[2025-12-03 04:21:41] -rw-r--r-- 2 mf493845 unix-user 373437716 Dec  3 00:30 EVNT.47530720._000135.pool.root.1
[2025-12-03 04:21:41] -rw------- 1 mf493845 unix-user         0 Dec  3 00:30 boinc_setup_complete
[2025-12-03 04:21:41] -rw------- 1 mf493845 unix-user      8192 Dec  3 00:30 boinc_mmap_file
[2025-12-03 04:21:41] -rw------- 1 mf493845 unix-user         0 Dec  3 00:30 boinc_lockfile
[2025-12-03 04:21:41] -rw------- 1 mf493845 unix-user      2889 Dec  3 00:30 pandaJob.out
[2025-12-03 04:21:41] -rw------- 1 mf493845 unix-user    989284 Dec  3 00:30 agis_schedconf.cvmfs.json
[2025-12-03 04:21:41] drwx------ 5 mf493845 unix-user       440 Dec  3 00:30 pilot3
[2025-12-03 04:21:41] -rw------- 1 mf493845 unix-user 682681173 Dec  3 04:20 HITS.47530725._001347.pool.root.1
[2025-12-03 04:21:41] -rw------- 1 mf493845 unix-user      1025 Dec  3 04:20 memory_monitor_summary.json
[2025-12-03 04:21:41] -rw------- 1 mf493845 unix-user   1516240 Dec  3 04:20 agis_ddmendpoints.agis.ALL.json
[2025-12-03 04:21:41] -rw------- 1 mf493845 unix-user   1622806 Dec  3 04:20 log.47530725._001347.job.log.tgz.1
[2025-12-03 04:21:41] -rw------- 1 mf493845 unix-user     26471 Dec  3 04:21 heartbeat.json
[2025-12-03 04:21:41] -rw------- 1 mf493845 unix-user        95 Dec  3 04:21 pilot_heartbeat.json
[2025-12-03 04:21:41] -rw------- 1 mf493845 unix-user      5021 Dec  3 04:21 pilotlog.txt
[2025-12-03 04:21:41] -rw------- 1 mf493845 unix-user   2014421 Dec  3 04:21 log.47530725._001347.job.log.1
[2025-12-03 04:21:41] -rw------- 1 mf493845 unix-user       353 Dec  3 04:21 output.list
[2025-12-03 04:21:41] -rw------- 1 mf493845 unix-user       620 Dec  3 04:21 runtime_log
[2025-12-03 04:21:41] -rw------- 1 mf493845 unix-user   3676160 Dec  3 04:21 result.tar.gz
[2025-12-03 04:21:41] -rw------- 1 mf493845 unix-user      9221 Dec  3 04:21 runtime_log.err
[2025-12-03 04:21:41] -rw------- 1 mf493845 unix-user       651 Dec  3 04:21 kL0NDm7sAj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmDQOKDmTULE6m.diag
[2025-12-03 04:21:41] -rw------- 1 mf493845 unix-user     21702 Dec  3 04:21 stderr.txt
[2025-12-03 04:21:41] HITS file was successfully produced:
[2025-12-03 04:21:41] -rw------- 1 mf493845 unix-user 682681173 Dec  3 04:20 shared/HITS.pool.root.1
[2025-12-03 04:21:41]  *** Contents of shared directory: ***
[2025-12-03 04:21:41] total 1035560
[2025-12-03 04:21:41] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 00:30 start_atlas.sh
[2025-12-03 04:21:41] -rw-r--r-- 2 mf493845 unix-user    590116 Dec  3 00:30 input.tar.gz
[2025-12-03 04:21:41] -rw-r--r-- 2 mf493845 unix-user 373437716 Dec  3 00:30 ATLAS.root_0
[2025-12-03 04:21:41] -rw------- 1 mf493845 unix-user 682681173 Dec  3 04:20 HITS.pool.root.1
[2025-12-03 04:21:41] -rw------- 1 mf493845 unix-user   3676160 Dec  3 04:21 result.tar.gz
04:21:43 (14395): run_atlas exited; CPU time 102606.938570
04:21:43 (14395): called boinc_finish(0)

</stderr_txt>
]]>

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