Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
00:59:23 (27435): wrapper (7.7.26015): starting
00:59:23 (27435): wrapper: running run_atlas (--nthreads 8)
[2025-12-03 00:59:23] Arguments: --nthreads 8
[2025-12-03 00:59:23] Threads: 8
[2025-12-03 00:59:23] Checking for CVMFS
[2025-12-03 00:59:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 00:59:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 00:59:23] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 00:59:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 00:59:23] 2.11.0.0 7924 75025 106600 153574 2 87 3619928 4096001 1040 130560 0 5139125 99.525 4803591 490 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-03 00:59:23] CVMFS is ok
[2025-12-03 00:59:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-03 00:59:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-03 00:59:23] Further information can be found at the LHC@home message board.
[2025-12-03 00:59:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 00:59:23] Checking for apptainer binary...
[2025-12-03 00:59:23] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-03 00:59:23] apptainer is not installed, using version from CVMFS
[2025-12-03 00:59:23] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 00:59:24] WARNING: Environment variable TMPDIR already has value [/tmp/job_10945959/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node097
[2025-12-03 00:59:24] apptainer works
[2025-12-03 00:59:24] Set ATHENA_PROC_NUMBER=8
[2025-12-03 00:59:24] Set ATHENA_CORE_NUMBER=8
[2025-12-03 00:59:24] Starting ATLAS job with PandaID=6893870981
[2025-12-03 00:59:24] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10945959/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 05:36:08]  *** The last 200 lines of the pilot log: ***
[2025-12-03 05:36:08] 2025-12-03 04:35:36,913 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 05:36:08] 2025-12-03 04:35:36,917 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2395.183078125
[2025-12-03 05:36:08] 2025-12-03 04:35:36,923 | INFO     | using path: /tmp/job_10945959/atlas/pilot/slots/0/PanDA_Pilot-6893870981/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 05:36:08] 2025-12-03 04:35:36,923 | INFO     | extracted standard info from prmon json
[2025-12-03 05:36:08] 2025-12-03 04:35:36,923 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 05:36:08] 2025-12-03 04:35:36,923 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 05:36:08] 2025-12-03 04:35:36,926 | INFO     | fitting pss+swap vs Time
[2025-12-03 05:36:08] 2025-12-03 04:35:36,926 | INFO     | sum of square deviations: 6239923508.0
[2025-12-03 05:36:08] 2025-12-03 04:35:36,927 | INFO     | sum of deviations: 374924384118.99994
[2025-12-03 05:36:08] 2025-12-03 04:35:36,927 | INFO     | mean x: 1764728251.5
[2025-12-03 05:36:08] 2025-12-03 04:35:36,927 | INFO     | mean y: 2948766.8602941176
[2025-12-03 05:36:08] 2025-12-03 04:35:36,927 | INFO     | intersect: -106030346670.61916
[2025-12-03 05:36:08] 2025-12-03 04:35:36,927 | INFO     | chi2: 5.560125109739348
[2025-12-03 05:36:08] 2025-12-03 04:35:36,927 | INFO     | sum of square deviations: 5902093918.0
[2025-12-03 05:36:08] 2025-12-03 04:35:36,928 | INFO     | sum of deviations: 421438451758.0
[2025-12-03 05:36:08] 2025-12-03 04:35:36,928 | INFO     | mean x: 1764728099.0
[2025-12-03 05:36:08] 2025-12-03 04:35:36,928 | INFO     | mean y: 2969520.7078651683
[2025-12-03 05:36:08] 2025-12-03 04:35:36,928 | INFO     | intersect: -126007271615.61397
[2025-12-03 05:36:08] 2025-12-03 04:35:36,929 | INFO     | chi2: 3.8190211687425513
[2025-12-03 05:36:08] 2025-12-03 04:35:36,929 | INFO     | current chi2=3.8190211687425513 (change=31.314114460248494 %)
[2025-12-03 05:36:08] 2025-12-03 04:35:36,929 | INFO     | sum of square deviations: 5576683165.5
[2025-12-03 05:36:08] 2025-12-03 04:35:36,930 | INFO     | sum of deviations: 395837170583.99994
[2025-12-03 05:36:08] 2025-12-03 04:35:36,930 | INFO     | mean x: 1764727946.5
[2025-12-03 05:36:08] 2025-12-03 04:35:36,930 | INFO     | mean y: 2957522.2213740456
[2025-12-03 05:36:08] 2025-12-03 04:35:36,930 | INFO     | intersect: -125258761040.99226
[2025-12-03 05:36:08] 2025-12-03 04:35:36,930 | INFO     | chi2: 3.813412475999089
[2025-12-03 05:36:08] 2025-12-03 04:35:36,930 | INFO     | current chi2=3.813412475999089 (change=0.14686204908649203 %)
[2025-12-03 05:36:08] 2025-12-03 04:35:36,930 | INFO     | right removable region: 261
[2025-12-03 05:36:08] 2025-12-03 04:35:36,930 | INFO     | sum of square deviations: 5902093918.0
[2025-12-03 05:36:08] 2025-12-03 04:35:36,931 | INFO     | sum of deviations: 279004157161.99994
[2025-12-03 05:36:08] 2025-12-03 04:35:36,931 | INFO     | mean x: 1764728404.0
[2025-12-03 05:36:08] 2025-12-03 04:35:36,931 | INFO     | mean y: 2991998.880149813
[2025-12-03 05:36:08] 2025-12-03 04:35:36,931 | INFO     | intersect: -83419360782.7757
[2025-12-03 05:36:08] 2025-12-03 04:35:36,932 | INFO     | chi2: 2.569986023210836
[2025-12-03 05:36:08] 2025-12-03 04:35:36,932 | INFO     | current chi2=2.569986023210836 (change=53.77826986825996 %)
[2025-12-03 05:36:08] 2025-12-03 04:35:36,932 | INFO     | sum of square deviations: 5576683165.5
[2025-12-03 05:36:08] 2025-12-03 04:35:36,933 | INFO     | sum of deviations: 239469483548.50003
[2025-12-03 05:36:08] 2025-12-03 04:35:36,933 | INFO     | mean x: 1764728556.5
[2025-12-03 05:36:08] 2025-12-03 04:35:36,933 | INFO     | mean y: 3010434.5916030533
[2025-12-03 05:36:08] 2025-12-03 04:35:36,933 | INFO     | intersect: -75776556646.20296
[2025-12-03 05:36:08] 2025-12-03 04:35:36,933 | INFO     | chi2: 2.1505128989622535
[2025-12-03 05:36:08] 2025-12-03 04:35:36,933 | INFO     | current chi2=2.1505128989622535 (change=16.32200021556965 %)
[2025-12-03 05:36:08] 2025-12-03 04:35:36,933 | INFO     | left removable region: 20
[2025-12-03 05:36:08] 2025-12-03 04:35:36,933 | INFO     | sum of square deviations: 4340323240.0
[2025-12-03 05:36:08] 2025-12-03 04:35:36,934 | INFO     | sum of deviations: 229422552633.00006
[2025-12-03 05:36:08] 2025-12-03 04:35:36,934 | INFO     | mean x: 1764728526.0
[2025-12-03 05:36:08] 2025-12-03 04:35:36,934 | INFO     | mean y: 3036435.091286307
[2025-12-03 05:36:08] 2025-12-03 04:35:36,934 | INFO     | intersect: -93277694227.53825
[2025-12-03 05:36:08] 2025-12-03 04:35:36,935 | INFO     | chi2: 0.3210483866213482
[2025-12-03 05:36:08] 2025-12-03 04:35:36,935 | INFO     | current memory leak: 52.86 B/s (using 241 data points, chi2=0.32)
[2025-12-03 05:36:08] 2025-12-03 04:35:36,935 | INFO     | could have reported an average CPU frequency of 2936 MHz (13 samples)
[2025-12-03 05:36:08] 2025-12-03 04:35:36,935 | INFO     | ..............................
[2025-12-03 05:36:08] 2025-12-03 04:35:36,935 | INFO     | . Timing measurements:
[2025-12-03 05:36:08] 2025-12-03 04:35:36,935 | INFO     | . get job = 0 s
[2025-12-03 05:36:08] 2025-12-03 04:35:36,935 | INFO     | . initial setup = 1 s
[2025-12-03 05:36:08] 2025-12-03 04:35:36,935 | INFO     | . payload setup = 2 s
[2025-12-03 05:36:08] 2025-12-03 04:35:36,935 | INFO     | . stage-in = 0 s
[2025-12-03 05:36:08] 2025-12-03 04:35:36,935 | INFO     | . payload execution = 16543 s
[2025-12-03 05:36:08] 2025-12-03 04:35:36,935 | INFO     | . stage-out = 1 s
[2025-12-03 05:36:08] 2025-12-03 04:35:36,935 | INFO     | . log creation = 0 s
[2025-12-03 05:36:08] 2025-12-03 04:35:36,935 | INFO     | ..............................
[2025-12-03 05:36:08] 2025-12-03 04:35:36,984 | INFO     | 
[2025-12-03 05:36:08] 2025-12-03 04:35:36,984 | INFO     | job summary report
[2025-12-03 05:36:08] 2025-12-03 04:35:36,984 | INFO     | --------------------------------------------------
[2025-12-03 05:36:08] 2025-12-03 04:35:36,984 | INFO     | PanDA job id: 6893870981
[2025-12-03 05:36:08] 2025-12-03 04:35:36,984 | INFO     | task id: 47523449
[2025-12-03 05:36:08] 2025-12-03 04:35:36,984 | INFO     | errors: (none)
[2025-12-03 05:36:08] 2025-12-03 04:35:36,984 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 05:36:08] 2025-12-03 04:35:36,984 | INFO     | pilot state: finished 
[2025-12-03 05:36:08] 2025-12-03 04:35:36,984 | INFO     | transexitcode: 0
[2025-12-03 05:36:08] 2025-12-03 04:35:36,984 | INFO     | exeerrorcode: 0
[2025-12-03 05:36:08] 2025-12-03 04:35:36,984 | INFO     | exeerrordiag: 
[2025-12-03 05:36:08] 2025-12-03 04:35:36,984 | INFO     | exitcode: 0
[2025-12-03 05:36:08] 2025-12-03 04:35:36,984 | INFO     | exitmsg: OK
[2025-12-03 05:36:08] 2025-12-03 04:35:36,984 | INFO     | cpuconsumptiontime: 123349 s
[2025-12-03 05:36:08] 2025-12-03 04:35:36,984 | INFO     | nevents: 1000
[2025-12-03 05:36:08] 2025-12-03 04:35:36,984 | INFO     | neventsw: 0
[2025-12-03 05:36:08] 2025-12-03 04:35:36,985 | INFO     | pid: 13730
[2025-12-03 05:36:08] 2025-12-03 04:35:36,985 | INFO     | pgrp: 13730
[2025-12-03 05:36:08] 2025-12-03 04:35:36,985 | INFO     | corecount: 8
[2025-12-03 05:36:08] 2025-12-03 04:35:36,985 | INFO     | event service: False
[2025-12-03 05:36:08] 2025-12-03 04:35:36,985 | INFO     | sizes: {0: 2284440, 2: 2284702, 11: 2284730, 16549: 2317467, 16550: 2326491, 16553: 2326547, 16556: 2326921}
[2025-12-03 05:36:08] 2025-12-03 04:35:36,985 | INFO     | --------------------------------------------------
[2025-12-03 05:36:08] 2025-12-03 04:35:36,985 | INFO     | 
[2025-12-03 05:36:08] 2025-12-03 04:35:36,985 | INFO     | executing command: ls -lF /tmp/job_10945959/atlas/pilot/slots/0
[2025-12-03 05:36:08] 2025-12-03 04:35:36,994 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 05:36:08] 2025-12-03 04:35:36,994 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 05:36:08] 2025-12-03 04:35:36,994 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 05:36:08] 2025-12-03 04:35:36,994 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 05:36:08] 2025-12-03 04:35:36,994 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 05:36:08] 2025-12-03 04:35:36,994 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 05:36:08] 2025-12-03 04:35:36,994 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 05:36:08] 2025-12-03 04:35:36,994 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 05:36:08] 2025-12-03 04:35:36,994 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 05:36:08] 2025-12-03 04:35:36,994 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 05:36:08] 2025-12-03 04:35:36,994 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 05:36:08] 2025-12-03 04:35:36,994 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 05:36:08] 2025-12-03 04:35:36,994 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 05:36:08] 2025-12-03 04:35:36,994 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 05:36:08] 2025-12-03 04:35:36,994 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 05:36:08] 2025-12-03 04:35:36,995 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 05:36:08] 2025-12-03 04:35:36,995 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 05:36:08] 2025-12-03 04:35:36,995 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 05:36:08] 2025-12-03 04:35:36,995 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 05:36:08] 2025-12-03 04:35:36,995 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 05:36:08] 2025-12-03 04:35:36,995 | INFO     | job 6893870981 has completed (purged errors)
[2025-12-03 05:36:08] 2025-12-03 04:35:36,995 | INFO     | overall cleanup function is called
[2025-12-03 05:36:08] 2025-12-03 04:35:38,002 | INFO     | --- collectZombieJob: --- 10, [13730]
[2025-12-03 05:36:08] 2025-12-03 04:35:38,002 | INFO     | zombie collector waiting for pid 13730
[2025-12-03 05:36:08] 2025-12-03 04:35:38,003 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 05:36:08] 2025-12-03 04:35:38,003 | INFO     | collected zombie processes
[2025-12-03 05:36:08] 2025-12-03 04:35:38,003 | INFO     | will attempt to kill all subprocesses of pid=13730
[2025-12-03 05:36:08] 2025-12-03 04:35:38,105 | INFO     | process IDs to be killed: [13730] (in reverse order)
[2025-12-03 05:36:08] 2025-12-03 04:35:38,143 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 05:36:08] 2025-12-03 04:35:38,143 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 05:36:08] 2025-12-03 04:35:38,147 | INFO     | did not find any defunct processes belonging to 13730
[2025-12-03 05:36:08] 2025-12-03 04:35:38,150 | INFO     | did not find any defunct processes belonging to 13730
[2025-12-03 05:36:08] 2025-12-03 04:35:38,151 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 05:36:08] 2025-12-03 04:35:38,151 | INFO     | ready for new job
[2025-12-03 05:36:08] 2025-12-03 04:35:38,151 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 05:36:08] 2025-12-03 04:35:38,152 | INFO     | ***************************************
[2025-12-03 05:36:08] 2025-12-03 04:35:38,152 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 05:36:08] 2025-12-03 04:35:38,152 | INFO     | ***************************************
[2025-12-03 05:36:08] 2025-12-03 04:35:38,152 | INFO     | 
[2025-12-03 05:36:08] 2025-12-03 04:35:38,166 | INFO     | architecture information:
[2025-12-03 05:36:08] 2025-12-03 04:35:38,167 | INFO     | executing command: cat /etc/os-release
[2025-12-03 05:36:08] 2025-12-03 04:35:38,173 | INFO     | cat /etc/os-release:
[2025-12-03 05:36:08] NAME="CentOS Linux"
[2025-12-03 05:36:08] VERSION="7 (Core)"
[2025-12-03 05:36:08] ID="centos"
[2025-12-03 05:36:08] ID_LIKE="rhel fedora"
[2025-12-03 05:36:08] VERSION_ID="7"
[2025-12-03 05:36:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 05:36:08] ANSI_COLOR="0;31"
[2025-12-03 05:36:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 05:36:08] HOME_URL="https://www.centos.org/"
[2025-12-03 05:36:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 05:36:08] 
[2025-12-03 05:36:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 05:36:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 05:36:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 05:36:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 05:36:08] 
[2025-12-03 05:36:08] 2025-12-03 04:35:38,173 | INFO     | ***************************************
[2025-12-03 05:36:08] 2025-12-03 04:35:38,675 | INFO     | executing command: df -mP /tmp/job_10945959/atlas/pilot/slots/0
[2025-12-03 05:36:08] 2025-12-03 04:35:38,683 | INFO     | sufficient remaining disk space (219391459328 B)
[2025-12-03 05:36:08] 2025-12-03 04:35:38,683 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 05:36:08] 2025-12-03 04:35:38,683 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 05:36:08] 2025-12-03 04:35:38,683 | INFO     | update_server=False
[2025-12-03 05:36:08] 2025-12-03 04:35:38,683 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 05:36:08] 2025-12-03 04:35:38,683 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 05:36:08] 2025-12-03 04:35:38,888 | INFO     | all job control threads have been joined
[2025-12-03 05:36:08] 2025-12-03 04:35:38,941 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 05:36:08] 2025-12-03 04:35:39,080 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-03 05:36:08] 2025-12-03 04:35:39,080 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-03 05:36:08] 2025-12-03 04:35:39,080 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 05:36:08] 2025-12-03 04:35:39,080 | INFO     | will abort loop
[2025-12-03 05:36:08] 2025-12-03 04:35:39,204 | INFO     | all data control threads have been joined
[2025-12-03 05:36:08] 2025-12-03 04:35:39,628 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 05:36:08] 2025-12-03 04:35:39,688 | INFO     | [job] retrieve thread has finished
[2025-12-03 05:36:08] 2025-12-03 04:35:39,688 | INFO     | [job] queue monitor thread has finished
[2025-12-03 05:36:08] 2025-12-03 04:35:39,694 | INFO     | all payload control threads have been joined
[2025-12-03 05:36:08] 2025-12-03 04:35:39,893 | INFO     | [job] control thread has finished
[2025-12-03 05:36:08] 2025-12-03 04:35:40,085 | INFO     | [job] job monitor thread has finished
[2025-12-03 05:36:08] 2025-12-03 04:35:40,210 | INFO     | [data] control thread has finished
[2025-12-03 05:36:08] 2025-12-03 04:35:40,274 | INFO     | [payload] validate_post thread has finished
[2025-12-03 05:36:08] 2025-12-03 04:35:40,476 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 05:36:08] 2025-12-03 04:35:40,533 | INFO     | [job] validate thread has finished
[2025-12-03 05:36:08] 2025-12-03 04:35:40,654 | INFO     | [payload] failed_post thread has finished
[2025-12-03 05:36:08] 2025-12-03 04:35:40,699 | INFO     | [payload] control thread has finished
[2025-12-03 05:36:08] 2025-12-03 04:35:40,946 | INFO     | [data] copytool_out thread has finished
[2025-12-03 05:36:08] 2025-12-03 04:35:41,024 | INFO     | [data] copytool_in thread has finished
[2025-12-03 05:36:08] 2025-12-03 04:35:41,039 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 05:36:08] 2025-12-03 04:35:41,072 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 05:36:08] 2025-12-03 04:35:41,127 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 05:36:08] 2025-12-03 04:35:43,633 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 05:36:08] 2025-12-03 04:35:55,667 | INFO     | [monitor] cgroup control has ended
[2025-12-03 05:36:08] 2025-12-03 04:35:56,220 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456060819200)>']
[2025-12-03 05:36:08] 2025-12-03 04:36:01,245 | INFO     | all workflow threads have been joined
[2025-12-03 05:36:08] 2025-12-03 04:36:01,245 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 05:36:08] 2025-12-03 04:36:01,245 | INFO     | traces error code: 0
[2025-12-03 05:36:08] 2025-12-03 04:36:01,245 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 05:36:08] 2025-12-03 04:36:08,314 | INFO     | PID=6682 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-03 05:36:08] 2025-12-03 04:36:08,314 | INFO     | .. there are 4 such processes running
[2025-12-03 05:36:08] 2025-12-03 04:36:08,314 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 05:36:08] 2025-12-03 04:36:08,314 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 05:36:08] 2025-12-03 04:36:08,314 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 05:36:08] 2025-12-03 04:36:08,314 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 05:36:08] 2025-12-03 04:36:08,314 | CRITICAL | thread 'MainThread' is not alive
[2025-12-03 05:36:08] 2025-12-03 04:36:08,314 | INFO     | [monitor] control thread has ended
[2025-12-03 05:36:08] 2025-12-03 04:36:08,369 [wrapper] ==== pilot stdout END ====
[2025-12-03 05:36:08] 2025-12-03 04:36:08,370 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 05:36:08] 2025-12-03 04:36:08,372 [wrapper] pilotpid: 6682
[2025-12-03 05:36:08] 2025-12-03 04:36:08,373 [wrapper] Pilot exit status: 0
[2025-12-03 05:36:08] 2025-12-03 04:36:08,377 [wrapper] pandaids: 6893870981
[2025-12-03 05:36:08] 2025-12-03 04:36:08,403 [wrapper] cleanup supervisor_pilot 23710 6683
[2025-12-03 05:36:08] 2025-12-03 04:36:08,404 [wrapper] Test setup, not cleaning
[2025-12-03 05:36:08] 2025-12-03 04:36:08,405 [wrapper] apfmon messages muted
[2025-12-03 05:36:08] 2025-12-03 04:36:08,406 [wrapper] ==== wrapper stdout END ====
[2025-12-03 05:36:08] 2025-12-03 04:36:08,408 [wrapper] ==== wrapper stderr END ====
[2025-12-03 05:36:08]  *** Error codes and diagnostics ***
[2025-12-03 05:36:08]     "exeErrorCode": 0,
[2025-12-03 05:36:08]     "exeErrorDiag": "",
[2025-12-03 05:36:08]     "pilotErrorCode": 0,
[2025-12-03 05:36:08]     "pilotErrorDiag": "",
[2025-12-03 05:36:08]  *** Listing of results directory ***
[2025-12-03 05:36:08] total 1316216
[2025-12-03 05:36:08] -rw------- 1 mf493845 unix-user    576529 Nov 20 15:50 pilot3.tar.gz
[2025-12-03 05:36:08] -rw------- 1 mf493845 unix-user      5112 Nov 20 16:01 queuedata.json
[2025-12-03 05:36:08] -rwx------ 1 mf493845 unix-user     36292 Nov 20 16:01 runpilot2-wrapper.sh
[2025-12-03 05:36:08] -rw------- 1 mf493845 unix-user       100 Dec  2 23:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 05:36:08] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  2 23:15 run_atlas
[2025-12-03 05:36:08] -rw------- 1 mf493845 unix-user       105 Dec  2 23:15 job.xml
[2025-12-03 05:36:08] -rw-r--r-- 2 mf493845 unix-user 409894941 Dec  3 00:59 EVNT.47493127._000662.pool.root.1
[2025-12-03 05:36:08] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 00:59 start_atlas.sh
[2025-12-03 05:36:08] drwxrwx--x 2 mf493845 unix-user       100 Dec  3 00:59 shared
[2025-12-03 05:36:08] -rw-r--r-- 2 mf493845 unix-user    590098 Dec  3 00:59 input.tar.gz
[2025-12-03 05:36:08] -rw------- 1 mf493845 unix-user      6391 Dec  3 00:59 init_data.xml
[2025-12-03 05:36:08] -rw------- 1 mf493845 unix-user         0 Dec  3 00:59 boinc_setup_complete
[2025-12-03 05:36:08] -rw------- 1 mf493845 unix-user      8192 Dec  3 00:59 boinc_mmap_file
[2025-12-03 05:36:08] -rw------- 1 mf493845 unix-user         0 Dec  3 00:59 boinc_lockfile
[2025-12-03 05:36:08] -rw------- 1 mf493845 unix-user      2785 Dec  3 00:59 pandaJob.out
[2025-12-03 05:36:08] -rw------- 1 mf493845 unix-user    989284 Dec  3 00:59 agis_schedconf.cvmfs.json
[2025-12-03 05:36:08] drwx------ 5 mf493845 unix-user       440 Dec  3 00:59 pilot3
[2025-12-03 05:36:08] -rw------- 1 mf493845 unix-user 926058313 Dec  3 05:35 HITS.47523449._006618.pool.root.1
[2025-12-03 05:36:08] -rw------- 1 mf493845 unix-user      1031 Dec  3 05:35 memory_monitor_summary.json
[2025-12-03 05:36:08] -rw------- 1 mf493845 unix-user   1516240 Dec  3 05:35 agis_ddmendpoints.agis.ALL.json
[2025-12-03 05:36:08] -rw------- 1 mf493845 unix-user   1574396 Dec  3 05:35 log.47523449._006618.job.log.tgz.1
[2025-12-03 05:36:08] -rw------- 1 mf493845 unix-user      8585 Dec  3 05:35 heartbeat.json
[2025-12-03 05:36:08] -rw------- 1 mf493845 unix-user       889 Dec  3 05:36 pilotlog.txt
[2025-12-03 05:36:08] -rw------- 1 mf493845 unix-user        95 Dec  3 05:36 pilot_heartbeat.json
[2025-12-03 05:36:08] -rw------- 1 mf493845 unix-user   2407735 Dec  3 05:36 log.47523449._006618.job.log.1
[2025-12-03 05:36:08] -rw------- 1 mf493845 unix-user       353 Dec  3 05:36 output.list
[2025-12-03 05:36:08] -rw------- 1 mf493845 unix-user       620 Dec  3 05:36 runtime_log
[2025-12-03 05:36:08] -rw------- 1 mf493845 unix-user   4003840 Dec  3 05:36 result.tar.gz
[2025-12-03 05:36:08] -rw------- 1 mf493845 unix-user      9221 Dec  3 05:36 runtime_log.err
[2025-12-03 05:36:08] -rw------- 1 mf493845 unix-user       650 Dec  3 05:36 mY4KDmbLLg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm2AIKDmQlAiPm.diag
[2025-12-03 05:36:08] -rw------- 1 mf493845 unix-user     21656 Dec  3 05:36 stderr.txt
[2025-12-03 05:36:08] HITS file was successfully produced:
[2025-12-03 05:36:08] -rw------- 1 mf493845 unix-user 926058313 Dec  3 05:35 shared/HITS.pool.root.1
[2025-12-03 05:36:08]  *** Contents of shared directory: ***
[2025-12-03 05:36:08] total 1309156
[2025-12-03 05:36:08] -rw-r--r-- 2 mf493845 unix-user 409894941 Dec  3 00:59 ATLAS.root_0
[2025-12-03 05:36:08] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 00:59 start_atlas.sh
[2025-12-03 05:36:08] -rw-r--r-- 2 mf493845 unix-user    590098 Dec  3 00:59 input.tar.gz
[2025-12-03 05:36:08] -rw------- 1 mf493845 unix-user 926058313 Dec  3 05:35 HITS.pool.root.1
[2025-12-03 05:36:08] -rw------- 1 mf493845 unix-user   4003840 Dec  3 05:36 result.tar.gz
05:36:09 (27435): run_atlas exited; CPU time 123566.608572
05:36:09 (27435): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN