Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:18:18 (27688): wrapper (7.7.26015): starting
16:18:18 (27688): wrapper: running run_atlas (--nthreads 11)
[2025-12-02 16:18:18] Arguments: --nthreads 11
[2025-12-02 16:18:18] Threads: 11
[2025-12-02 16:18:18] Checking for CVMFS
[2025-12-02 16:18:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 16:18:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 16:18:18] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 16:18:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 16:18:19] 2.13.2.0 1657905 39428 210328 153569 3 245 37027078 40960000 38324 16776704 0 456080945 99.692 362233010 48416 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-02 16:18:19] CVMFS is ok
[2025-12-02 16:18:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 16:18:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 16:18:19] Further information can be found at the LHC@home message board.
[2025-12-02 16:18:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 16:18:19] Checking for apptainer binary...
[2025-12-02 16:18:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 16:18:19] Running /usr/bin/apptainer --version
[2025-12-02 16:18:20] apptainer version 1.4.4-1.el9
[2025-12-02 16:18:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 16:18:21] c-208-39.aglt2.org
[2025-12-02 16:18:21] apptainer works
[2025-12-02 16:18:21] Set ATHENA_PROC_NUMBER=11
[2025-12-02 16:18:21] Set ATHENA_CORE_NUMBER=11
[2025-12-02 16:18:21] Starting ATLAS job with PandaID=6897834882
[2025-12-02 16:18:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
23:11:05 (3253968): wrapper (7.7.26015): starting
23:11:05 (3253968): wrapper: running run_atlas (--nthreads 11)
[2025-12-02 23:11:05] Arguments: --nthreads 11
[2025-12-02 23:11:05] Threads: 11
[2025-12-02 23:11:05] This job has been restarted, cleaning up previous attempt
[2025-12-02 23:11:05] Checking for CVMFS
[2025-12-02 23:11:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 23:11:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 23:11:05] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 23:11:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 23:11:05] 2.13.2.0 1657905 39841 245256 153579 3 546 24319821 40960000 23221 16776704 0 459625127 99.692 364147989 48429 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-02 23:11:05] CVMFS is ok
[2025-12-02 23:11:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 23:11:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 23:11:05] Further information can be found at the LHC@home message board.
[2025-12-02 23:11:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 23:11:05] Checking for apptainer binary...
[2025-12-02 23:11:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 23:11:05] Running /usr/bin/apptainer --version
[2025-12-02 23:11:05] apptainer version 1.4.4-1.el9
[2025-12-02 23:11:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 23:11:06] c-208-39.aglt2.org
[2025-12-02 23:11:06] apptainer works
[2025-12-02 23:11:06] Set ATHENA_PROC_NUMBER=11
[2025-12-02 23:11:06] Set ATHENA_CORE_NUMBER=11
[2025-12-02 23:11:06] Starting ATLAS job with PandaID=6897834882
[2025-12-02 23:11:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 06:18:08]  *** The last 200 lines of the pilot log: ***
[2025-12-03 06:18:08] 2025-12-03 11:17:15,562 | INFO     | monitor loop #1488: job 0:6897834882 is in state 'finished'
[2025-12-03 06:18:08] 2025-12-03 11:17:15,562 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 06:18:08] 2025-12-03 11:17:17,762 | INFO     | PID=3275027 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-03 06:18:08] 2025-12-03 11:17:17,762 | INFO     | .. there are 34 such processes running
[2025-12-03 06:18:08] 2025-12-03 11:17:18,071 | INFO     | monitor loop #1489: job 0:6897834882 is in state 'finished'
[2025-12-03 06:18:08] 2025-12-03 11:17:18,071 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 06:18:08] 2025-12-03 11:17:18,763 | INFO     | time since job start (25562s) is within the limit (172800.0s)
[2025-12-03 06:18:08] 2025-12-03 11:17:20,575 | INFO     | monitor loop #1490: job 0:6897834882 is in state 'finished'
[2025-12-03 06:18:08] 2025-12-03 11:17:20,575 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 06:18:08] 2025-12-03 11:17:20,770 | INFO     | time since job start (25564s) is within the limit (172800.0s)
[2025-12-03 06:18:08] 2025-12-03 11:17:22,781 | INFO     | time since job start (25566s) is within the limit (172800.0s)
[2025-12-03 06:18:08] 2025-12-03 11:17:23,096 | INFO     | monitor loop #1491: job 0:6897834882 is in state 'finished'
[2025-12-03 06:18:08] 2025-12-03 11:17:23,096 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 06:18:08] 2025-12-03 11:17:24,788 | INFO     | time since job start (25568s) is within the limit (172800.0s)
[2025-12-03 06:18:08] 2025-12-03 11:17:25,604 | INFO     | monitor loop #1492: job 0:6897834882 is in state 'finished'
[2025-12-03 06:18:08] 2025-12-03 11:17:25,604 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 06:18:08] 2025-12-03 11:17:26,175 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-03 06:18:08] 2025-12-03 11:17:26,191 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3795.1761640625004
[2025-12-03 06:18:08] 2025-12-03 11:17:26,243 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6897834882/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 06:18:08] 2025-12-03 11:17:26,244 | INFO     | extracted standard info from prmon json
[2025-12-03 06:18:08] 2025-12-03 11:17:26,244 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 06:18:08] 2025-12-03 11:17:26,244 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 06:18:08] 2025-12-03 11:17:26,256 | INFO     | fitting pss+swap vs Time
[2025-12-03 06:18:08] 2025-12-03 11:17:26,256 | INFO     | sum of square deviations: 22647697969.04306
[2025-12-03 06:18:08] 2025-12-03 11:17:26,259 | INFO     | sum of deviations: -237346811873.14798
[2025-12-03 06:18:08] 2025-12-03 11:17:26,259 | INFO     | mean x: 1764747828.320574
[2025-12-03 06:18:08] 2025-12-03 11:17:26,259 | INFO     | mean y: 3802877.784688995
[2025-12-03 06:18:08] 2025-12-03 11:17:26,259 | INFO     | intersect: 18498277300.06293
[2025-12-03 06:18:08] 2025-12-03 11:17:26,259 | INFO     | chi2: 17.797330843233436
[2025-12-03 06:18:08] 2025-12-03 11:17:26,259 | INFO     | sum of square deviations: 21845183877.675568
[2025-12-03 06:18:08] 2025-12-03 11:17:26,268 | INFO     | sum of deviations: -38690328613.5473
[2025-12-03 06:18:08] 2025-12-03 11:17:26,268 | INFO     | mean x: 1764747675.8668282
[2025-12-03 06:18:08] 2025-12-03 11:17:26,268 | INFO     | mean y: 3840631.2082324456
[2025-12-03 06:18:08] 2025-12-03 11:17:26,268 | INFO     | intersect: 3129411369.436627
[2025-12-03 06:18:08] 2025-12-03 11:17:26,268 | INFO     | chi2: 13.57779149727148
[2025-12-03 06:18:08] 2025-12-03 11:17:26,268 | INFO     | current chi2=13.57779149727148 (change=23.708832426218727 %)
[2025-12-03 06:18:08] 2025-12-03 11:17:26,268 | INFO     | right removable region: 412
[2025-12-03 06:18:08] 2025-12-03 11:17:26,269 | INFO     | sum of square deviations: 21844260351.133163
[2025-12-03 06:18:08] 2025-12-03 11:17:26,271 | INFO     | sum of deviations: -368776877950.1913
[2025-12-03 06:18:08] 2025-12-03 11:17:26,271 | INFO     | mean x: 1764747980.8619854
[2025-12-03 06:18:08] 2025-12-03 11:17:26,271 | INFO     | mean y: 3827731.452784504
[2025-12-03 06:18:08] 2025-12-03 11:17:26,271 | INFO     | intersect: 29796470754.837505
[2025-12-03 06:18:08] 2025-12-03 11:17:26,271 | INFO     | chi2: 16.00005873513839
[2025-12-03 06:18:08] 2025-12-03 11:17:26,271 | INFO     | current chi2=16.00005873513839 (change=10.098548619038409 %)
[2025-12-03 06:18:08] 2025-12-03 11:17:26,271 | INFO     | left removable region: 10
[2025-12-03 06:18:08] 2025-12-03 11:17:26,272 | INFO     | sum of square deviations: 20145268623.296032
[2025-12-03 06:18:08] 2025-12-03 11:17:26,278 | INFO     | sum of deviations: -150883800729.02225
[2025-12-03 06:18:08] 2025-12-03 11:17:26,278 | INFO     | mean x: 1764747950.4452736
[2025-12-03 06:18:08] 2025-12-03 11:17:26,278 | INFO     | mean y: 3880839.067164179
[2025-12-03 06:18:08] 2025-12-03 11:17:26,278 | INFO     | intersect: 13221469696.830904
[2025-12-03 06:18:08] 2025-12-03 11:17:26,278 | INFO     | chi2: 10.57794151206378
[2025-12-03 06:18:08] 2025-12-03 11:17:26,278 | INFO     | current memory leak: -7.49 B/s (using 402 data points, chi2=10.58)
[2025-12-03 06:18:08] 2025-12-03 11:17:26,279 | INFO     | could have reported an average CPU frequency of 3759 MHz (17 samples)
[2025-12-03 06:18:08] 2025-12-03 11:17:26,279 | INFO     | ..............................
[2025-12-03 06:18:08] 2025-12-03 11:17:26,279 | INFO     | . Timing measurements:
[2025-12-03 06:18:08] 2025-12-03 11:17:26,279 | INFO     | . get job = 0 s
[2025-12-03 06:18:08] 2025-12-03 11:17:26,279 | INFO     | . initial setup = 2 s
[2025-12-03 06:18:08] 2025-12-03 11:17:26,279 | INFO     | . payload setup = 9 s
[2025-12-03 06:18:08] 2025-12-03 11:17:26,279 | INFO     | . stage-in = 0 s
[2025-12-03 06:18:08] 2025-12-03 11:17:26,279 | INFO     | . payload execution = 25498 s
[2025-12-03 06:18:08] 2025-12-03 11:17:26,279 | INFO     | . stage-out = 5 s
[2025-12-03 06:18:08] 2025-12-03 11:17:26,279 | INFO     | . log creation = 2 s
[2025-12-03 06:18:08] 2025-12-03 11:17:26,280 | INFO     | ..............................
[2025-12-03 06:18:08] 2025-12-03 11:17:26,795 | INFO     | time since job start (25570s) is within the limit (172800.0s)
[2025-12-03 06:18:08] 2025-12-03 11:17:26,814 | INFO     | 
[2025-12-03 06:18:08] 2025-12-03 11:17:26,814 | INFO     | job summary report
[2025-12-03 06:18:08] 2025-12-03 11:17:26,814 | INFO     | --------------------------------------------------
[2025-12-03 06:18:08] 2025-12-03 11:17:26,814 | INFO     | PanDA job id: 6897834882
[2025-12-03 06:18:08] 2025-12-03 11:17:26,814 | INFO     | task id: 47530783
[2025-12-03 06:18:08] 2025-12-03 11:17:26,814 | INFO     | errors: (none)
[2025-12-03 06:18:08] 2025-12-03 11:17:26,814 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 06:18:08] 2025-12-03 11:17:26,814 | INFO     | pilot state: finished 
[2025-12-03 06:18:08] 2025-12-03 11:17:26,814 | INFO     | transexitcode: 0
[2025-12-03 06:18:08] 2025-12-03 11:17:26,814 | INFO     | exeerrorcode: 0
[2025-12-03 06:18:08] 2025-12-03 11:17:26,814 | INFO     | exeerrordiag: 
[2025-12-03 06:18:08] 2025-12-03 11:17:26,814 | INFO     | exitcode: 0
[2025-12-03 06:18:08] 2025-12-03 11:17:26,814 | INFO     | exitmsg: OK
[2025-12-03 06:18:08] 2025-12-03 11:17:26,814 | INFO     | cpuconsumptiontime: 120296 s
[2025-12-03 06:18:08] 2025-12-03 11:17:26,814 | INFO     | nevents: 1000
[2025-12-03 06:18:08] 2025-12-03 11:17:26,814 | INFO     | neventsw: 0
[2025-12-03 06:18:08] 2025-12-03 11:17:26,814 | INFO     | pid: 3341825
[2025-12-03 06:18:08] 2025-12-03 11:17:26,814 | INFO     | pgrp: 3341825
[2025-12-03 06:18:08] 2025-12-03 11:17:26,815 | INFO     | corecount: 11
[2025-12-03 06:18:08] 2025-12-03 11:17:26,815 | INFO     | event service: False
[2025-12-03 06:18:08] 2025-12-03 11:17:26,815 | INFO     | sizes: {0: 2284450, 4: 2284712, 11: 2284740, 25512: 2340312, 25518: 2349362, 25554: 2349616}
[2025-12-03 06:18:08] 2025-12-03 11:17:26,815 | INFO     | --------------------------------------------------
[2025-12-03 06:18:08] 2025-12-03 11:17:26,815 | INFO     | 
[2025-12-03 06:18:08] 2025-12-03 11:17:26,815 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-12-03 06:18:08] 2025-12-03 11:17:26,937 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 06:18:08] 2025-12-03 11:17:26,937 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 06:18:08] 2025-12-03 11:17:26,937 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 06:18:08] 2025-12-03 11:17:26,937 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 06:18:08] 2025-12-03 11:17:26,937 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 06:18:08] 2025-12-03 11:17:26,937 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 06:18:08] 2025-12-03 11:17:26,937 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 06:18:08] 2025-12-03 11:17:26,937 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 06:18:08] 2025-12-03 11:17:26,937 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 06:18:08] 2025-12-03 11:17:26,937 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 06:18:08] 2025-12-03 11:17:26,937 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 06:18:08] 2025-12-03 11:17:26,937 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 06:18:08] 2025-12-03 11:17:26,937 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 06:18:08] 2025-12-03 11:17:26,937 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 06:18:08] 2025-12-03 11:17:26,937 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 06:18:08] 2025-12-03 11:17:26,937 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 06:18:08] 2025-12-03 11:17:26,938 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 06:18:08] 2025-12-03 11:17:26,938 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 06:18:08] 2025-12-03 11:17:26,938 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 06:18:08] 2025-12-03 11:17:26,938 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 06:18:08] 2025-12-03 11:17:26,938 | INFO     | job 6897834882 has completed (purged errors)
[2025-12-03 06:18:08] 2025-12-03 11:17:26,938 | INFO     | overall cleanup function is called
[2025-12-03 06:18:08] 2025-12-03 11:17:27,974 | INFO     | --- collectZombieJob: --- 10, [3341825]
[2025-12-03 06:18:08] 2025-12-03 11:17:27,974 | INFO     | zombie collector waiting for pid 3341825
[2025-12-03 06:18:08] 2025-12-03 11:17:27,974 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 06:18:08] 2025-12-03 11:17:27,974 | INFO     | collected zombie processes
[2025-12-03 06:18:08] 2025-12-03 11:17:27,974 | INFO     | will attempt to kill all subprocesses of pid=3341825
[2025-12-03 06:18:08] 2025-12-03 11:17:28,896 | INFO     | process IDs to be killed: [3341825] (in reverse order)
[2025-12-03 06:18:08] 2025-12-03 11:17:29,127 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 06:18:08] 2025-12-03 11:17:29,128 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 06:18:08] 2025-12-03 11:17:29,251 | INFO     | did not find any defunct processes belonging to 3341825
[2025-12-03 06:18:08] 2025-12-03 11:17:29,302 | INFO     | did not find any defunct processes belonging to 3341825
[2025-12-03 06:18:08] 2025-12-03 11:17:29,303 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 06:18:08] 2025-12-03 11:17:29,303 | INFO     | ready for new job
[2025-12-03 06:18:08] 2025-12-03 11:17:29,303 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 06:18:08] 2025-12-03 11:17:29,305 | INFO     | ***************************************
[2025-12-03 06:18:08] 2025-12-03 11:17:29,305 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 06:18:08] 2025-12-03 11:17:29,305 | INFO     | ***************************************
[2025-12-03 06:18:08] 2025-12-03 11:17:29,305 | INFO     | 
[2025-12-03 06:18:08] 2025-12-03 11:17:29,310 | INFO     | architecture information:
[2025-12-03 06:18:08] 2025-12-03 11:17:29,310 | INFO     | executing command: cat /etc/os-release
[2025-12-03 06:18:08] 2025-12-03 11:17:29,354 | INFO     | cat /etc/os-release:
[2025-12-03 06:18:08] NAME="CentOS Linux"
[2025-12-03 06:18:08] VERSION="7 (Core)"
[2025-12-03 06:18:08] ID="centos"
[2025-12-03 06:18:08] ID_LIKE="rhel fedora"
[2025-12-03 06:18:08] VERSION_ID="7"
[2025-12-03 06:18:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 06:18:08] ANSI_COLOR="0;31"
[2025-12-03 06:18:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 06:18:08] HOME_URL="https://www.centos.org/"
[2025-12-03 06:18:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 06:18:08] 
[2025-12-03 06:18:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 06:18:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 06:18:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 06:18:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 06:18:08] 
[2025-12-03 06:18:08] 2025-12-03 11:17:29,354 | INFO     | ***************************************
[2025-12-03 06:18:08] 2025-12-03 11:17:29,858 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-12-03 06:18:08] 2025-12-03 11:17:29,916 | INFO     | sufficient remaining disk space (160909230080 B)
[2025-12-03 06:18:08] 2025-12-03 11:17:29,916 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 06:18:08] 2025-12-03 11:17:29,916 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 06:18:08] 2025-12-03 11:17:29,916 | INFO     | update_server=False
[2025-12-03 06:18:08] 2025-12-03 11:17:29,916 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 06:18:08] 2025-12-03 11:17:29,918 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 06:18:08] 2025-12-03 11:17:29,918 | INFO     | aborting loop
[2025-12-03 06:18:08] 2025-12-03 11:17:30,192 | INFO     | all data control threads have been joined
[2025-12-03 06:18:08] 2025-12-03 11:17:30,248 | INFO     | all payload control threads have been joined
[2025-12-03 06:18:08] 2025-12-03 11:17:30,618 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 06:18:08] 2025-12-03 11:17:30,923 | INFO     | [job] retrieve thread has finished
[2025-12-03 06:18:08] 2025-12-03 11:17:30,925 | INFO     | [job] job monitor thread has finished
[2025-12-03 06:18:08] 2025-12-03 11:17:31,059 | INFO     | [payload] failed_post thread has finished
[2025-12-03 06:18:08] 2025-12-03 11:17:31,198 | INFO     | [data] control thread has finished
[2025-12-03 06:18:08] 2025-12-03 11:17:31,254 | INFO     | [payload] control thread has finished
[2025-12-03 06:18:08] 2025-12-03 11:17:31,422 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 06:18:08] 2025-12-03 11:17:31,463 | INFO     | all job control threads have been joined
[2025-12-03 06:18:08] 2025-12-03 11:17:31,736 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 06:18:08] 2025-12-03 11:17:31,770 | INFO     | [job] validate thread has finished
[2025-12-03 06:18:08] 2025-12-03 11:17:31,866 | INFO     | [payload] validate_post thread has finished
[2025-12-03 06:18:08] 2025-12-03 11:17:32,011 | INFO     | [data] copytool_in thread has finished
[2025-12-03 06:18:08] 2025-12-03 11:17:32,051 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 06:18:08] 2025-12-03 11:17:32,209 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 06:18:08] 2025-12-03 11:17:32,296 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 06:18:08] 2025-12-03 11:17:32,319 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 06:18:08] 2025-12-03 11:17:32,428 | INFO     | [job] queue monitor thread has finished
[2025-12-03 06:18:08] 2025-12-03 11:17:32,471 | INFO     | [job] control thread has finished
[2025-12-03 06:18:08] 2025-12-03 11:17:32,625 | INFO     | [data] copytool_out thread has finished
[2025-12-03 06:18:08] 2025-12-03 11:17:36,328 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 06:18:08] 2025-12-03 11:18:01,425 | INFO     | [monitor] cgroup control has ended
[2025-12-03 06:18:08] 2025-12-03 11:18:01,535 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139633812559680)>', '<ExcThread(monitor, started 139633304250112)>']
[2025-12-03 06:18:08] 2025-12-03 11:18:01,674 | INFO     | PID=3275027 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-03 06:18:08] 2025-12-03 11:18:01,674 | INFO     | .. there are 34 such processes running
[2025-12-03 06:18:08] 2025-12-03 11:18:01,675 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 06:18:08] 2025-12-03 11:18:01,675 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 06:18:08] 2025-12-03 11:18:01,675 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 06:18:08] 2025-12-03 11:18:01,675 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 06:18:08] 2025-12-03 11:18:01,675 | INFO     | [monitor] control thread has ended
[2025-12-03 06:18:08] 2025-12-03 11:18:06,561 | INFO     | all workflow threads have been joined
[2025-12-03 06:18:08] 2025-12-03 11:18:06,561 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 06:18:08] 2025-12-03 11:18:06,561 | INFO     | traces error code: 0
[2025-12-03 06:18:08] 2025-12-03 11:18:06,561 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 06:18:08] 2025-12-03 11:18:06,924 [wrapper] ==== pilot stdout END ====
[2025-12-03 06:18:08] 2025-12-03 11:18:06,939 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 06:18:08] 2025-12-03 11:18:06,981 [wrapper] pilotpid: 3275027
[2025-12-03 06:18:08] 2025-12-03 11:18:07,008 [wrapper] Pilot exit status: 0
[2025-12-03 06:18:08] 2025-12-03 11:18:07,102 [wrapper] pandaids: 6897834882 6897834882
[2025-12-03 06:18:08] 2025-12-03 11:18:07,505 [wrapper] cleanup supervisor_pilot 3789823 3275028
[2025-12-03 06:18:08] 2025-12-03 11:18:07,520 [wrapper] Test setup, not cleaning
[2025-12-03 06:18:08] 2025-12-03 11:18:07,538 [wrapper] apfmon messages muted
[2025-12-03 06:18:08] 2025-12-03 11:18:07,557 [wrapper] ==== wrapper stdout END ====
[2025-12-03 06:18:08] 2025-12-03 11:18:07,577 [wrapper] ==== wrapper stderr END ====
[2025-12-03 06:18:08]  *** Error codes and diagnostics ***
[2025-12-03 06:18:08]     "exeErrorCode": 0,
[2025-12-03 06:18:08]     "exeErrorDiag": "",
[2025-12-03 06:18:08]     "pilotErrorCode": 0,
[2025-12-03 06:18:08]     "pilotErrorDiag": "",
[2025-12-03 06:18:08]  *** Listing of results directory ***
[2025-12-03 06:18:08] total 1450512
[2025-12-03 06:18:08] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-12-03 06:18:08] -rw-r--r--. 1 boincer umatlas    576529 Nov 28 17:41 pilot3.tar.gz
[2025-12-03 06:18:08] -rwx------. 1 boincer umatlas     36292 Nov 28 17:46 runpilot2-wrapper.sh
[2025-12-03 06:18:08] -rw-r--r--. 1 boincer umatlas      5112 Nov 28 17:49 queuedata.json
[2025-12-03 06:18:08] -rw-r--r--. 1 boincer umatlas       100 Dec  2 16:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 06:18:08] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  2 16:18 run_atlas
[2025-12-03 06:18:08] -rw-r--r--. 1 boincer umatlas       105 Dec  2 16:18 job.xml
[2025-12-03 06:18:08] -rw-r--r--. 3 boincer umatlas 379675871 Dec  2 16:18 EVNT.47530775._000042.pool.root.1
[2025-12-03 06:18:08] -rw-r--r--. 3 boincer umatlas 379675871 Dec  2 16:18 ATLAS.root_0
[2025-12-03 06:18:08] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 16:18 start_atlas.sh
[2025-12-03 06:18:08] drwxrwx--x. 2 boincer umatlas      4096 Dec  2 16:18 shared
[2025-12-03 06:18:08] -rw-r--r--. 2 boincer umatlas    590125 Dec  2 16:18 input.tar.gz
[2025-12-03 06:18:08] -rw-r--r--. 1 boincer umatlas         0 Dec  2 16:18 boinc_lockfile
[2025-12-03 06:18:08] -rw-r--r--. 1 boincer umatlas      2879 Dec  2 23:11 pandaJob.out
[2025-12-03 06:18:08] -rw-------. 1 boincer umatlas        57 Dec  2 23:11 setup.sh.local
[2025-12-03 06:18:08] -rw-------. 1 boincer umatlas    989300 Dec  2 23:11 agis_schedconf.cvmfs.json
[2025-12-03 06:18:08] -rw-r--r--. 1 boincer umatlas       533 Dec  3 05:54 boinc_task_state.xml
[2025-12-03 06:18:08] -rw-r--r--. 1 boincer umatlas      7176 Dec  3 06:10 init_data.xml
[2025-12-03 06:18:08] -rw-------. 1 boincer umatlas 711414206 Dec  3 06:15 HITS.47530783._000415.pool.root.1
[2025-12-03 06:18:08] -rw-------. 1 boincer umatlas      1068 Dec  3 06:16 memory_monitor_summary.json
[2025-12-03 06:18:08] -rw-------. 1 boincer umatlas   1516240 Dec  3 06:16 agis_ddmendpoints.agis.ALL.json
[2025-12-03 06:18:08] -rw-------. 1 boincer umatlas   2101173 Dec  3 06:16 log.47530783._000415.job.log.tgz.1
[2025-12-03 06:18:08] -rw-------. 1 boincer umatlas     28043 Dec  3 06:17 heartbeat.json
[2025-12-03 06:18:08] -rw-------. 1 boincer umatlas        96 Dec  3 06:18 pilot_heartbeat.json
[2025-12-03 06:18:08] -rw-------. 1 boincer umatlas      4825 Dec  3 06:18 pilotlog.txt
[2025-12-03 06:18:08] -rw-------. 1 boincer umatlas   3196343 Dec  3 06:18 log.47530783._000415.job.log.1
[2025-12-03 06:18:08] -rw-r--r--. 1 boincer umatlas        29 Dec  3 06:18 wrapper_checkpoint.txt
[2025-12-03 06:18:08] -rw-------. 1 boincer umatlas       353 Dec  3 06:18 output.list
[2025-12-03 06:18:08] -rw-r--r--. 1 boincer umatlas      8192 Dec  3 06:18 boinc_mmap_file
[2025-12-03 06:18:08] -rw-r--r--. 1 boincer umatlas       620 Dec  3 06:18 runtime_log
[2025-12-03 06:18:08] -rw-------. 1 boincer umatlas   5335040 Dec  3 06:18 result.tar.gz
[2025-12-03 06:18:08] -rw-r--r--. 1 boincer umatlas      9430 Dec  3 06:18 runtime_log.err
[2025-12-03 06:18:08] -rw-------. 1 boincer umatlas       791 Dec  3 06:18 2kENDmPPMj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmxsOKDmbFSeNo.diag
[2025-12-03 06:18:08] -rw-r--r--. 1 boincer umatlas     24004 Dec  3 06:18 stderr.txt
[2025-12-03 06:18:08] HITS file was successfully produced:
[2025-12-03 06:18:08] -rw-------. 1 boincer umatlas 711414206 Dec  3 06:15 shared/HITS.pool.root.1
[2025-12-03 06:18:08]  *** Contents of shared directory: ***
[2025-12-03 06:18:08] total 1071340
[2025-12-03 06:18:08] -rw-r--r--. 3 boincer umatlas 379675871 Dec  2 16:18 ATLAS.root_0
[2025-12-03 06:18:08] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 16:18 start_atlas.sh
[2025-12-03 06:18:08] -rw-r--r--. 2 boincer umatlas    590125 Dec  2 16:18 input.tar.gz
[2025-12-03 06:18:08] -rw-------. 1 boincer umatlas 711414206 Dec  3 06:15 HITS.pool.root.1
[2025-12-03 06:18:08] -rw-------. 1 boincer umatlas   5335040 Dec  3 06:18 result.tar.gz
06:18:09 (3253968): run_atlas exited; CPU time 120515.732176
06:18:09 (3253968): called boinc_finish(0)

</stderr_txt>
]]>

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