Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
00:26:48 (10061): wrapper (7.7.26015): starting
00:26:48 (10061): wrapper: running run_atlas (--nthreads 8)
[2025-12-03 00:26:48] Arguments: --nthreads 8
[2025-12-03 00:26:48] Threads: 8
[2025-12-03 00:26:48] Checking for CVMFS
[2025-12-03 00:26:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 00:26:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 00:26:48] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 00:26:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 00:26:48] 2.11.0.0 4281 74631 104444 153574 3 76 3129298 4096000 1832 130560 1 8090359 99.656 5423977 542 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-03 00:26:48] CVMFS is ok
[2025-12-03 00:26:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-03 00:26:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-03 00:26:48] Further information can be found at the LHC@home message board.
[2025-12-03 00:26:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 00:26:48] Checking for apptainer binary...
[2025-12-03 00:26:48] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-03 00:26:48] apptainer is not installed, using version from CVMFS
[2025-12-03 00:26:48] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 00:26:49] WARNING: Environment variable TMPDIR already has value [/tmp/job_10945774/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node082
[2025-12-03 00:26:49] apptainer works
[2025-12-03 00:26:49] Set ATHENA_PROC_NUMBER=8
[2025-12-03 00:26:49] Set ATHENA_CORE_NUMBER=8
[2025-12-03 00:26:49] Starting ATLAS job with PandaID=6905245733
[2025-12-03 00:26:49] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10945774/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 04:12:21]  *** The last 200 lines of the pilot log: ***
[2025-12-03 04:12:21] 2025-12-03 03:11:46,470 | INFO     | PID=13984 has CPU usage=7.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-03 04:12:21] 2025-12-03 03:11:46,470 | INFO     | .. there are 6 such processes running
[2025-12-03 04:12:21] 2025-12-03 03:11:46,495 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 04:12:21] 2025-12-03 03:11:46,499 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2721.59984375
[2025-12-03 04:12:21] 2025-12-03 03:11:46,504 | INFO     | using path: /tmp/job_10945774/atlas/pilot/slots/0/PanDA_Pilot-6905245733/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 04:12:21] 2025-12-03 03:11:46,505 | INFO     | extracted standard info from prmon json
[2025-12-03 04:12:21] 2025-12-03 03:11:46,505 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 04:12:21] 2025-12-03 03:11:46,505 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 04:12:21] 2025-12-03 03:11:46,507 | INFO     | fitting pss+swap vs Time
[2025-12-03 04:12:21] 2025-12-03 03:11:46,507 | INFO     | sum of square deviations: 3346927870.0
[2025-12-03 04:12:21] 2025-12-03 03:11:46,508 | INFO     | sum of deviations: 100162720410.00002
[2025-12-03 04:12:21] 2025-12-03 03:11:46,508 | INFO     | mean x: 1764724743.0
[2025-12-03 04:12:21] 2025-12-03 03:11:46,508 | INFO     | mean y: 3376443.443438914
[2025-12-03 04:12:21] 2025-12-03 03:11:46,508 | INFO     | intersect: -52809124422.82654
[2025-12-03 04:12:21] 2025-12-03 03:11:46,508 | INFO     | chi2: 3.239528338301673
[2025-12-03 04:12:21] 2025-12-03 03:11:46,508 | INFO     | sum of square deviations: 3124858590.0
[2025-12-03 04:12:21] 2025-12-03 03:11:46,509 | INFO     | sum of deviations: 139178843027.5
[2025-12-03 04:12:21] 2025-12-03 03:11:46,509 | INFO     | mean x: 1764724590.5
[2025-12-03 04:12:21] 2025-12-03 03:11:46,509 | INFO     | mean y: 3402873.189814815
[2025-12-03 04:12:21] 2025-12-03 03:11:46,509 | INFO     | intersect: -78596098414.31284
[2025-12-03 04:12:21] 2025-12-03 03:11:46,509 | INFO     | chi2: 1.781636478615395
[2025-12-03 04:12:21] 2025-12-03 03:11:46,509 | INFO     | current chi2=1.781636478615395 (change=45.00321366074481 %)
[2025-12-03 04:12:21] 2025-12-03 03:11:46,510 | INFO     | sum of square deviations: 2912836010.0
[2025-12-03 04:12:21] 2025-12-03 03:11:46,510 | INFO     | sum of deviations: 133496183158.99997
[2025-12-03 04:12:21] 2025-12-03 03:11:46,510 | INFO     | mean x: 1764724438.0
[2025-12-03 04:12:21] 2025-12-03 03:11:46,510 | INFO     | mean y: 3398785.625592417
[2025-12-03 04:12:21] 2025-12-03 03:11:46,510 | INFO     | intersect: -80874472811.55069
[2025-12-03 04:12:21] 2025-12-03 03:11:46,510 | INFO     | chi2: 1.780533280711321
[2025-12-03 04:12:21] 2025-12-03 03:11:46,511 | INFO     | current chi2=1.780533280711321 (change=0.061920482506703484 %)
[2025-12-03 04:12:21] 2025-12-03 03:11:46,511 | INFO     | right removable region: 210
[2025-12-03 04:12:21] 2025-12-03 03:11:46,511 | INFO     | sum of square deviations: 3124858590.0
[2025-12-03 04:12:21] 2025-12-03 03:11:46,511 | INFO     | sum of deviations: 43956906616.5
[2025-12-03 04:12:21] 2025-12-03 03:11:46,511 | INFO     | mean x: 1764724895.5
[2025-12-03 04:12:21] 2025-12-03 03:11:46,512 | INFO     | mean y: 3414717.513888889
[2025-12-03 04:12:21] 2025-12-03 03:11:46,512 | INFO     | intersect: -24820699782.754177
[2025-12-03 04:12:21] 2025-12-03 03:11:46,512 | INFO     | chi2: 1.5164926200538744
[2025-12-03 04:12:21] 2025-12-03 03:11:46,512 | INFO     | current chi2=1.5164926200538744 (change=53.1878575617308 %)
[2025-12-03 04:12:21] 2025-12-03 03:11:46,512 | INFO     | sum of square deviations: 2912836010.0
[2025-12-03 04:12:21] 2025-12-03 03:11:46,513 | INFO     | sum of deviations: 33821167448.0
[2025-12-03 04:12:21] 2025-12-03 03:11:46,513 | INFO     | mean x: 1764725048.0
[2025-12-03 04:12:21] 2025-12-03 03:11:46,513 | INFO     | mean y: 3421998.7535545025
[2025-12-03 04:12:21] 2025-12-03 03:11:46,513 | INFO     | intersect: -20486938990.73718
[2025-12-03 04:12:21] 2025-12-03 03:11:46,513 | INFO     | chi2: 1.5017861353192479
[2025-12-03 04:12:21] 2025-12-03 03:11:46,513 | INFO     | current chi2=1.5017861353192479 (change=0.9697696210420126 %)
[2025-12-03 04:12:21] 2025-12-03 03:11:46,513 | INFO     | left removable region: 20
[2025-12-03 04:12:21] 2025-12-03 03:11:46,513 | INFO     | sum of square deviations: 2126802667.5
[2025-12-03 04:12:21] 2025-12-03 03:11:46,514 | INFO     | sum of deviations: 53403384031.99999
[2025-12-03 04:12:21] 2025-12-03 03:11:46,514 | INFO     | mean x: 1764725017.5
[2025-12-03 04:12:21] 2025-12-03 03:11:46,514 | INFO     | mean y: 3459529.0315789473
[2025-12-03 04:12:21] 2025-12-03 03:11:46,514 | INFO     | intersect: -44308262127.40668
[2025-12-03 04:12:21] 2025-12-03 03:11:46,514 | INFO     | chi2: 0.005070454136384075
[2025-12-03 04:12:21] 2025-12-03 03:11:46,514 | INFO     | current memory leak: 25.11 B/s (using 190 data points, chi2=0.01)
[2025-12-03 04:12:21] 2025-12-03 03:11:46,514 | INFO     | could have reported an average CPU frequency of 3055 MHz (11 samples)
[2025-12-03 04:12:21] 2025-12-03 03:11:46,514 | INFO     | ..............................
[2025-12-03 04:12:21] 2025-12-03 03:11:46,514 | INFO     | . Timing measurements:
[2025-12-03 04:12:21] 2025-12-03 03:11:46,515 | INFO     | . get job = 0 s
[2025-12-03 04:12:21] 2025-12-03 03:11:46,515 | INFO     | . initial setup = 1 s
[2025-12-03 04:12:21] 2025-12-03 03:11:46,515 | INFO     | . payload setup = 4 s
[2025-12-03 04:12:21] 2025-12-03 03:11:46,515 | INFO     | . stage-in = 0 s
[2025-12-03 04:12:21] 2025-12-03 03:11:46,515 | INFO     | . payload execution = 13466 s
[2025-12-03 04:12:21] 2025-12-03 03:11:46,515 | INFO     | . stage-out = 1 s
[2025-12-03 04:12:21] 2025-12-03 03:11:46,515 | INFO     | . log creation = 0 s
[2025-12-03 04:12:21] 2025-12-03 03:11:46,515 | INFO     | ..............................
[2025-12-03 04:12:21] 2025-12-03 03:11:46,765 | INFO     | 
[2025-12-03 04:12:21] 2025-12-03 03:11:46,765 | INFO     | job summary report
[2025-12-03 04:12:21] 2025-12-03 03:11:46,765 | INFO     | --------------------------------------------------
[2025-12-03 04:12:21] 2025-12-03 03:11:46,765 | INFO     | PanDA job id: 6905245733
[2025-12-03 04:12:21] 2025-12-03 03:11:46,765 | INFO     | task id: 47530725
[2025-12-03 04:12:21] 2025-12-03 03:11:46,765 | INFO     | errors: (none)
[2025-12-03 04:12:21] 2025-12-03 03:11:46,765 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 04:12:21] 2025-12-03 03:11:46,765 | INFO     | pilot state: finished 
[2025-12-03 04:12:21] 2025-12-03 03:11:46,765 | INFO     | transexitcode: 0
[2025-12-03 04:12:21] 2025-12-03 03:11:46,765 | INFO     | exeerrorcode: 0
[2025-12-03 04:12:21] 2025-12-03 03:11:46,766 | INFO     | exeerrordiag: 
[2025-12-03 04:12:21] 2025-12-03 03:11:46,766 | INFO     | exitcode: 0
[2025-12-03 04:12:21] 2025-12-03 03:11:46,766 | INFO     | exitmsg: OK
[2025-12-03 04:12:21] 2025-12-03 03:11:46,766 | INFO     | cpuconsumptiontime: 101255 s
[2025-12-03 04:12:21] 2025-12-03 03:11:46,766 | INFO     | nevents: 1000
[2025-12-03 04:12:21] 2025-12-03 03:11:46,766 | INFO     | neventsw: 0
[2025-12-03 04:12:21] 2025-12-03 03:11:46,766 | INFO     | pid: 21272
[2025-12-03 04:12:21] 2025-12-03 03:11:46,766 | INFO     | pgrp: 21272
[2025-12-03 04:12:21] 2025-12-03 03:11:46,766 | INFO     | corecount: 8
[2025-12-03 04:12:21] 2025-12-03 03:11:46,766 | INFO     | event service: False
[2025-12-03 04:12:21] 2025-12-03 03:11:46,766 | INFO     | sizes: {0: 2284524, 2: 2284786, 11: 2284814, 13473: 2335493, 13474: 2344517, 13477: 2344573, 13480: 2344947}
[2025-12-03 04:12:21] 2025-12-03 03:11:46,766 | INFO     | --------------------------------------------------
[2025-12-03 04:12:21] 2025-12-03 03:11:46,766 | INFO     | 
[2025-12-03 04:12:21] 2025-12-03 03:11:46,766 | INFO     | executing command: ls -lF /tmp/job_10945774/atlas/pilot/slots/0
[2025-12-03 04:12:21] 2025-12-03 03:11:46,774 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 04:12:21] 2025-12-03 03:11:46,775 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 04:12:21] 2025-12-03 03:11:46,775 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 04:12:21] 2025-12-03 03:11:46,775 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 04:12:21] 2025-12-03 03:11:46,775 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 04:12:21] 2025-12-03 03:11:46,775 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 04:12:21] 2025-12-03 03:11:46,775 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 04:12:21] 2025-12-03 03:11:46,775 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 04:12:21] 2025-12-03 03:11:46,775 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 04:12:21] 2025-12-03 03:11:46,775 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 04:12:21] 2025-12-03 03:11:46,775 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 04:12:21] 2025-12-03 03:11:46,775 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 04:12:21] 2025-12-03 03:11:46,775 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 04:12:21] 2025-12-03 03:11:46,775 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 04:12:21] 2025-12-03 03:11:46,775 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 04:12:21] 2025-12-03 03:11:46,775 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 04:12:21] 2025-12-03 03:11:46,775 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 04:12:21] 2025-12-03 03:11:46,775 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 04:12:21] 2025-12-03 03:11:46,775 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 04:12:21] 2025-12-03 03:11:46,775 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 04:12:21] 2025-12-03 03:11:46,775 | INFO     | job 6905245733 has completed (purged errors)
[2025-12-03 04:12:21] 2025-12-03 03:11:46,775 | INFO     | overall cleanup function is called
[2025-12-03 04:12:21] 2025-12-03 03:11:47,783 | INFO     | --- collectZombieJob: --- 10, [21272]
[2025-12-03 04:12:21] 2025-12-03 03:11:47,783 | INFO     | zombie collector waiting for pid 21272
[2025-12-03 04:12:21] 2025-12-03 03:11:47,783 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 04:12:21] 2025-12-03 03:11:47,783 | INFO     | collected zombie processes
[2025-12-03 04:12:21] 2025-12-03 03:11:47,783 | INFO     | will attempt to kill all subprocesses of pid=21272
[2025-12-03 04:12:21] 2025-12-03 03:11:47,899 | INFO     | process IDs to be killed: [21272] (in reverse order)
[2025-12-03 04:12:21] 2025-12-03 03:11:47,940 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 04:12:21] 2025-12-03 03:11:47,940 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 04:12:21] 2025-12-03 03:11:47,944 | INFO     | did not find any defunct processes belonging to 21272
[2025-12-03 04:12:21] 2025-12-03 03:11:47,947 | INFO     | did not find any defunct processes belonging to 21272
[2025-12-03 04:12:21] 2025-12-03 03:11:47,948 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 04:12:21] 2025-12-03 03:11:47,948 | INFO     | ready for new job
[2025-12-03 04:12:21] 2025-12-03 03:11:47,948 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 04:12:21] 2025-12-03 03:11:47,949 | INFO     | ***************************************
[2025-12-03 04:12:21] 2025-12-03 03:11:47,949 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 04:12:21] 2025-12-03 03:11:47,949 | INFO     | ***************************************
[2025-12-03 04:12:21] 2025-12-03 03:11:47,949 | INFO     | 
[2025-12-03 04:12:21] 2025-12-03 03:11:47,963 | INFO     | architecture information:
[2025-12-03 04:12:21] 2025-12-03 03:11:47,963 | INFO     | executing command: cat /etc/os-release
[2025-12-03 04:12:21] 2025-12-03 03:11:47,969 | INFO     | cat /etc/os-release:
[2025-12-03 04:12:21] NAME="CentOS Linux"
[2025-12-03 04:12:21] VERSION="7 (Core)"
[2025-12-03 04:12:21] ID="centos"
[2025-12-03 04:12:21] ID_LIKE="rhel fedora"
[2025-12-03 04:12:21] VERSION_ID="7"
[2025-12-03 04:12:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 04:12:21] ANSI_COLOR="0;31"
[2025-12-03 04:12:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 04:12:21] HOME_URL="https://www.centos.org/"
[2025-12-03 04:12:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 04:12:21] 
[2025-12-03 04:12:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 04:12:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 04:12:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 04:12:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 04:12:21] 
[2025-12-03 04:12:21] 2025-12-03 03:11:47,969 | INFO     | ***************************************
[2025-12-03 04:12:21] 2025-12-03 03:11:48,472 | INFO     | executing command: df -mP /tmp/job_10945774/atlas/pilot/slots/0
[2025-12-03 04:12:21] 2025-12-03 03:11:48,477 | INFO     | sufficient remaining disk space (218184548352 B)
[2025-12-03 04:12:21] 2025-12-03 03:11:48,477 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 04:12:21] 2025-12-03 03:11:48,477 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 04:12:21] 2025-12-03 03:11:48,477 | INFO     | update_server=False
[2025-12-03 04:12:21] 2025-12-03 03:11:48,477 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 04:12:21] 2025-12-03 03:11:48,478 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 04:12:21] 2025-12-03 03:11:48,576 | INFO     | all data control threads have been joined
[2025-12-03 04:12:21] 2025-12-03 03:11:48,879 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 04:12:21] 2025-12-03 03:11:48,879 | INFO     | aborting loop
[2025-12-03 04:12:21] 2025-12-03 03:11:49,131 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 04:12:21] 2025-12-03 03:11:49,483 | INFO     | [job] retrieve thread has finished
[2025-12-03 04:12:21] 2025-12-03 03:11:49,483 | INFO     | [job] queue monitor thread has finished
[2025-12-03 04:12:21] 2025-12-03 03:11:49,514 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 04:12:21] 2025-12-03 03:11:49,541 | INFO     | all job control threads have been joined
[2025-12-03 04:12:21] 2025-12-03 03:11:49,581 | INFO     | [data] control thread has finished
[2025-12-03 04:12:21] 2025-12-03 03:11:49,650 | INFO     | all payload control threads have been joined
[2025-12-03 04:12:21] 2025-12-03 03:11:49,716 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 04:12:21] 2025-12-03 03:11:49,822 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 04:12:21] 2025-12-03 03:11:49,836 | INFO     | [data] copytool_in thread has finished
[2025-12-03 04:12:21] 2025-12-03 03:11:49,856 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 04:12:21] 2025-12-03 03:11:49,884 | INFO     | [job] job monitor thread has finished
[2025-12-03 04:12:21] 2025-12-03 03:11:50,111 | INFO     | [payload] failed_post thread has finished
[2025-12-03 04:12:21] 2025-12-03 03:11:50,364 | INFO     | [payload] validate_post thread has finished
[2025-12-03 04:12:21] 2025-12-03 03:11:50,546 | INFO     | [job] control thread has finished
[2025-12-03 04:12:21] 2025-12-03 03:11:50,655 | INFO     | [payload] control thread has finished
[2025-12-03 04:12:21] 2025-12-03 03:11:50,844 | INFO     | [job] validate thread has finished
[2025-12-03 04:12:21] 2025-12-03 03:11:50,940 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 04:12:21] 2025-12-03 03:11:51,136 | INFO     | [data] copytool_out thread has finished
[2025-12-03 04:12:21] 2025-12-03 03:11:53,861 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 04:12:21] 2025-12-03 03:11:56,124 [wrapper] supervise_pilot (15 min periods counter: 16)
[2025-12-03 04:12:21] 2025-12-03 03:12:15,692 | INFO     | [monitor] cgroup control has ended
[2025-12-03 04:12:21] 2025-12-03 03:12:16,445 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456065021696)>']
[2025-12-03 04:12:21] 2025-12-03 03:12:18,670 | INFO     | PID=13984 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-03 04:12:21] 2025-12-03 03:12:18,670 | INFO     | .. there are 6 such processes running
[2025-12-03 04:12:21] 2025-12-03 03:12:18,670 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 04:12:21] 2025-12-03 03:12:18,670 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 04:12:21] 2025-12-03 03:12:18,670 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 04:12:21] 2025-12-03 03:12:18,670 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 04:12:21] 2025-12-03 03:12:18,670 | INFO     | [monitor] control thread has ended
[2025-12-03 04:12:21] 2025-12-03 03:12:21,470 | INFO     | all workflow threads have been joined
[2025-12-03 04:12:21] 2025-12-03 03:12:21,470 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 04:12:21] 2025-12-03 03:12:21,470 | INFO     | traces error code: 0
[2025-12-03 04:12:21] 2025-12-03 03:12:21,470 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 04:12:21] 2025-12-03 03:12:21,520 [wrapper] ==== pilot stdout END ====
[2025-12-03 04:12:21] 2025-12-03 03:12:21,522 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 04:12:21] 2025-12-03 03:12:21,523 [wrapper] pilotpid: 13984
[2025-12-03 04:12:21] 2025-12-03 03:12:21,524 [wrapper] Pilot exit status: 0
[2025-12-03 04:12:21] 2025-12-03 03:12:21,527 [wrapper] pandaids: 6905245733
[2025-12-03 04:12:21] 2025-12-03 03:12:21,553 [wrapper] cleanup supervisor_pilot  5991 13985
[2025-12-03 04:12:21] 2025-12-03 03:12:21,555 [wrapper] Test setup, not cleaning
[2025-12-03 04:12:21] 2025-12-03 03:12:21,556 [wrapper] apfmon messages muted
[2025-12-03 04:12:21] 2025-12-03 03:12:21,557 [wrapper] ==== wrapper stdout END ====
[2025-12-03 04:12:21] 2025-12-03 03:12:21,557 [wrapper] ==== wrapper stderr END ====
[2025-12-03 04:12:21]  *** Error codes and diagnostics ***
[2025-12-03 04:12:21]     "exeErrorCode": 0,
[2025-12-03 04:12:21]     "exeErrorDiag": "",
[2025-12-03 04:12:21]     "pilotErrorCode": 0,
[2025-12-03 04:12:21]     "pilotErrorDiag": "",
[2025-12-03 04:12:21]  *** Listing of results directory ***
[2025-12-03 04:12:21] total 1058884
[2025-12-03 04:12:21] -rw------- 1 mf493845 unix-user    576529 Nov 30 01:16 pilot3.tar.gz
[2025-12-03 04:12:21] -rwx------ 1 mf493845 unix-user     36292 Nov 30 01:18 runpilot2-wrapper.sh
[2025-12-03 04:12:21] -rw------- 1 mf493845 unix-user      5112 Nov 30 01:18 queuedata.json
[2025-12-03 04:12:21] -rw------- 1 mf493845 unix-user       100 Dec  2 22:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 04:12:21] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  2 22:51 run_atlas
[2025-12-03 04:12:21] -rw------- 1 mf493845 unix-user       105 Dec  2 22:51 job.xml
[2025-12-03 04:12:21] -rw-r--r-- 2 mf493845 unix-user 376140436 Dec  3 00:26 EVNT.47530720._000013.pool.root.1
[2025-12-03 04:12:21] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 00:26 start_atlas.sh
[2025-12-03 04:12:21] drwxrwx--x 2 mf493845 unix-user       100 Dec  3 00:26 shared
[2025-12-03 04:12:21] -rw-r--r-- 2 mf493845 unix-user    590131 Dec  3 00:26 input.tar.gz
[2025-12-03 04:12:21] -rw------- 1 mf493845 unix-user      6391 Dec  3 00:26 init_data.xml
[2025-12-03 04:12:21] -rw------- 1 mf493845 unix-user         0 Dec  3 00:26 boinc_setup_complete
[2025-12-03 04:12:21] -rw------- 1 mf493845 unix-user      8192 Dec  3 00:26 boinc_mmap_file
[2025-12-03 04:12:21] -rw------- 1 mf493845 unix-user         0 Dec  3 00:26 boinc_lockfile
[2025-12-03 04:12:21] -rw------- 1 mf493845 unix-user      2877 Dec  3 00:26 pandaJob.out
[2025-12-03 04:12:21] -rw------- 1 mf493845 unix-user    989284 Dec  3 00:26 agis_schedconf.cvmfs.json
[2025-12-03 04:12:21] drwx------ 5 mf493845 unix-user       440 Dec  3 00:26 pilot3
[2025-12-03 04:12:21] -rw------- 1 mf493845 unix-user 697063787 Dec  3 04:11 HITS.47530725._001528.pool.root.1
[2025-12-03 04:12:21] -rw------- 1 mf493845 unix-user      1028 Dec  3 04:11 memory_monitor_summary.json
[2025-12-03 04:12:21] -rw------- 1 mf493845 unix-user   1516240 Dec  3 04:11 agis_ddmendpoints.agis.ALL.json
[2025-12-03 04:12:21] -rw------- 1 mf493845 unix-user   1618395 Dec  3 04:11 log.47530725._001528.job.log.tgz.1
[2025-12-03 04:12:21] -rw------- 1 mf493845 unix-user     28212 Dec  3 04:11 heartbeat.json
[2025-12-03 04:12:21] -rw------- 1 mf493845 unix-user        95 Dec  3 04:12 pilot_heartbeat.json
[2025-12-03 04:12:21] -rw------- 1 mf493845 unix-user      4835 Dec  3 04:12 pilotlog.txt
[2025-12-03 04:12:21] -rw------- 1 mf493845 unix-user   1965787 Dec  3 04:12 log.47530725._001528.job.log.1
[2025-12-03 04:12:21] -rw------- 1 mf493845 unix-user       353 Dec  3 04:12 output.list
[2025-12-03 04:12:21] -rw------- 1 mf493845 unix-user       620 Dec  3 04:12 runtime_log
[2025-12-03 04:12:21] -rw------- 1 mf493845 unix-user   3624960 Dec  3 04:12 result.tar.gz
[2025-12-03 04:12:21] -rw------- 1 mf493845 unix-user      9221 Dec  3 04:12 runtime_log.err
[2025-12-03 04:12:21] -rw------- 1 mf493845 unix-user       649 Dec  3 04:12 buPODmmJkj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmPzLKDmg09gBo.diag
[2025-12-03 04:12:21] -rw------- 1 mf493845 unix-user     21744 Dec  3 04:12 stderr.txt
[2025-12-03 04:12:21] HITS file was successfully produced:
[2025-12-03 04:12:21] -rw------- 1 mf493845 unix-user 697063787 Dec  3 04:11 shared/HITS.pool.root.1
[2025-12-03 04:12:21]  *** Contents of shared directory: ***
[2025-12-03 04:12:21] total 1052192
[2025-12-03 04:12:21] -rw-r--r-- 2 mf493845 unix-user 376140436 Dec  3 00:26 ATLAS.root_0
[2025-12-03 04:12:21] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 00:26 start_atlas.sh
[2025-12-03 04:12:21] -rw-r--r-- 2 mf493845 unix-user    590131 Dec  3 00:26 input.tar.gz
[2025-12-03 04:12:21] -rw------- 1 mf493845 unix-user 697063787 Dec  3 04:11 HITS.pool.root.1
[2025-12-03 04:12:21] -rw------- 1 mf493845 unix-user   3624960 Dec  3 04:12 result.tar.gz
04:12:23 (10061): run_atlas exited; CPU time 101436.568981
04:12:23 (10061): called boinc_finish(0)

</stderr_txt>
]]>

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