Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
00:58:51 (10843): wrapper (7.7.26015): starting
00:58:51 (10843): wrapper: running run_atlas (--nthreads 8)
[2025-12-03 00:58:51] Arguments: --nthreads 8
[2025-12-03 00:58:51] Threads: 8
[2025-12-03 00:58:51] Checking for CVMFS
[2025-12-03 00:58:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 00:58:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 00:58:51] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 00:58:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 00:58:51] 2.11.0.0 4351 75144 120076 153574 0 151 3665877 4096001 3949 130560 2 7319548 99.425 6364495 585 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-03 00:58:51] CVMFS is ok
[2025-12-03 00:58:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-03 00:58:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-03 00:58:51] Further information can be found at the LHC@home message board.
[2025-12-03 00:58:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 00:58:51] Checking for apptainer binary...
[2025-12-03 00:58:51] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-03 00:58:51] apptainer is not installed, using version from CVMFS
[2025-12-03 00:58:51] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 00:58:51] WARNING: Environment variable TMPDIR already has value [/tmp/job_10945936/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node096
[2025-12-03 00:58:51] apptainer works
[2025-12-03 00:58:51] Set ATHENA_PROC_NUMBER=8
[2025-12-03 00:58:51] Set ATHENA_CORE_NUMBER=8
[2025-12-03 00:58:51] Starting ATLAS job with PandaID=6893879188
[2025-12-03 00:58:51] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10945936/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 05:33:44]  *** The last 200 lines of the pilot log: ***
[2025-12-03 05:33:44] 2025-12-03 04:33:11,418 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-03 05:33:44] 2025-12-03 04:33:11,568 | INFO     | monitor loop #1197: job 0:6893879188 is in state 'finished'
[2025-12-03 05:33:44] 2025-12-03 04:33:11,568 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 05:33:44] 2025-12-03 04:33:11,622 | INFO     | time since job start (16454s) is within the limit (172800.0s)
[2025-12-03 05:33:44] 2025-12-03 04:33:13,114 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 05:33:44] 2025-12-03 04:33:13,118 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2365.218390625
[2025-12-03 05:33:44] 2025-12-03 04:33:13,124 | INFO     | using path: /tmp/job_10945936/atlas/pilot/slots/0/PanDA_Pilot-6893879188/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 05:33:44] 2025-12-03 04:33:13,124 | INFO     | extracted standard info from prmon json
[2025-12-03 05:33:44] 2025-12-03 04:33:13,124 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 05:33:44] 2025-12-03 04:33:13,124 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 05:33:44] 2025-12-03 04:33:13,127 | INFO     | fitting pss+swap vs Time
[2025-12-03 05:33:44] 2025-12-03 04:33:13,127 | INFO     | sum of square deviations: 6103286527.5
[2025-12-03 05:33:44] 2025-12-03 04:33:13,128 | INFO     | sum of deviations: 124006569502.0
[2025-12-03 05:33:44] 2025-12-03 04:33:13,128 | INFO     | mean x: 1764728159.5
[2025-12-03 05:33:44] 2025-12-03 04:33:13,128 | INFO     | mean y: 2891946.274074074
[2025-12-03 05:33:44] 2025-12-03 04:33:13,128 | INFO     | intersect: -35852853016.23757
[2025-12-03 05:33:44] 2025-12-03 04:33:13,128 | INFO     | chi2: 3.227912579936097
[2025-12-03 05:33:44] 2025-12-03 04:33:13,129 | INFO     | sum of square deviations: 5770452380.0
[2025-12-03 05:33:44] 2025-12-03 04:33:13,130 | INFO     | sum of deviations: 178554650680.99997
[2025-12-03 05:33:44] 2025-12-03 04:33:13,130 | INFO     | mean x: 1764728007.0
[2025-12-03 05:33:44] 2025-12-03 04:33:13,130 | INFO     | mean y: 2916750.113207547
[2025-12-03 05:33:44] 2025-12-03 04:33:13,130 | INFO     | intersect: -54602922114.267525
[2025-12-03 05:33:44] 2025-12-03 04:33:13,130 | INFO     | chi2: 1.4627360785890813
[2025-12-03 05:33:44] 2025-12-03 04:33:13,130 | INFO     | current chi2=1.4627360785890813 (change=54.68476786883618 %)
[2025-12-03 05:33:44] 2025-12-03 04:33:13,130 | INFO     | sum of square deviations: 5449944045.0
[2025-12-03 05:33:44] 2025-12-03 04:33:13,131 | INFO     | sum of deviations: 170925175172.0
[2025-12-03 05:33:44] 2025-12-03 04:33:13,131 | INFO     | mean x: 1764727854.5
[2025-12-03 05:33:44] 2025-12-03 04:33:13,131 | INFO     | mean y: 2913122.8076923075
[2025-12-03 05:33:44] 2025-12-03 04:33:13,131 | INFO     | intersect: -55343786801.21331
[2025-12-03 05:33:44] 2025-12-03 04:33:13,131 | INFO     | chi2: 1.4622335133178652
[2025-12-03 05:33:44] 2025-12-03 04:33:13,131 | INFO     | current chi2=1.4622335133178652 (change=0.03435789125409568 %)
[2025-12-03 05:33:44] 2025-12-03 04:33:13,132 | INFO     | right removable region: 259
[2025-12-03 05:33:44] 2025-12-03 04:33:13,132 | INFO     | sum of square deviations: 5770452380.0
[2025-12-03 05:33:44] 2025-12-03 04:33:13,133 | INFO     | sum of deviations: 73069008538.99997
[2025-12-03 05:33:44] 2025-12-03 04:33:13,133 | INFO     | mean x: 1764728312.0
[2025-12-03 05:33:44] 2025-12-03 04:33:13,133 | INFO     | mean y: 2915113.966037736
[2025-12-03 05:33:44] 2025-12-03 04:33:13,133 | INFO     | intersect: -22343157534.595184
[2025-12-03 05:33:44] 2025-12-03 04:33:13,133 | INFO     | chi2: 1.8441806299385348
[2025-12-03 05:33:44] 2025-12-03 04:33:13,133 | INFO     | current chi2=1.8441806299385348 (change=42.86770213662217 %)
[2025-12-03 05:33:44] 2025-12-03 04:33:13,133 | INFO     | sum of square deviations: 5449944045.0
[2025-12-03 05:33:44] 2025-12-03 04:33:13,134 | INFO     | sum of deviations: 60628071227.0
[2025-12-03 05:33:44] 2025-12-03 04:33:13,134 | INFO     | mean x: 1764728464.5
[2025-12-03 05:33:44] 2025-12-03 04:33:13,134 | INFO     | mean y: 2921029.676923077
[2025-12-03 05:33:44] 2025-12-03 04:33:13,134 | INFO     | intersect: -19628855399.326828
[2025-12-03 05:33:44] 2025-12-03 04:33:13,135 | INFO     | chi2: 1.8246125476102222
[2025-12-03 05:33:44] 2025-12-03 04:33:13,135 | INFO     | current chi2=1.8246125476102222 (change=1.0610718934275343 %)
[2025-12-03 05:33:44] 2025-12-03 04:33:13,135 | INFO     | left removable region: 20
[2025-12-03 05:33:44] 2025-12-03 04:33:13,135 | INFO     | sum of square deviations: 4233158440.0
[2025-12-03 05:33:44] 2025-12-03 04:33:13,136 | INFO     | sum of deviations: 86878231482.99997
[2025-12-03 05:33:44] 2025-12-03 04:33:13,136 | INFO     | mean x: 1764728434.0
[2025-12-03 05:33:44] 2025-12-03 04:33:13,136 | INFO     | mean y: 2954743.640167364
[2025-12-03 05:33:44] 2025-12-03 04:33:13,136 | INFO     | intersect: -36215034156.79041
[2025-12-03 05:33:44] 2025-12-03 04:33:13,136 | INFO     | chi2: 0.025289899328226964
[2025-12-03 05:33:44] 2025-12-03 04:33:13,136 | INFO     | current memory leak: 20.52 B/s (using 239 data points, chi2=0.03)
[2025-12-03 05:33:44] 2025-12-03 04:33:13,136 | INFO     | could have reported an average CPU frequency of 2981 MHz (12 samples)
[2025-12-03 05:33:44] 2025-12-03 04:33:13,136 | INFO     | ..............................
[2025-12-03 05:33:44] 2025-12-03 04:33:13,136 | INFO     | . Timing measurements:
[2025-12-03 05:33:44] 2025-12-03 04:33:13,136 | INFO     | . get job = 0 s
[2025-12-03 05:33:44] 2025-12-03 04:33:13,136 | INFO     | . initial setup = 1 s
[2025-12-03 05:33:44] 2025-12-03 04:33:13,136 | INFO     | . payload setup = 2 s
[2025-12-03 05:33:44] 2025-12-03 04:33:13,136 | INFO     | . stage-in = 0 s
[2025-12-03 05:33:44] 2025-12-03 04:33:13,136 | INFO     | . payload execution = 16430 s
[2025-12-03 05:33:44] 2025-12-03 04:33:13,136 | INFO     | . stage-out = 1 s
[2025-12-03 05:33:44] 2025-12-03 04:33:13,136 | INFO     | . log creation = 0 s
[2025-12-03 05:33:44] 2025-12-03 04:33:13,137 | INFO     | ..............................
[2025-12-03 05:33:44] 2025-12-03 04:33:13,186 | INFO     | 
[2025-12-03 05:33:44] 2025-12-03 04:33:13,186 | INFO     | job summary report
[2025-12-03 05:33:44] 2025-12-03 04:33:13,186 | INFO     | --------------------------------------------------
[2025-12-03 05:33:44] 2025-12-03 04:33:13,186 | INFO     | PanDA job id: 6893879188
[2025-12-03 05:33:44] 2025-12-03 04:33:13,186 | INFO     | task id: 47523449
[2025-12-03 05:33:44] 2025-12-03 04:33:13,186 | INFO     | errors: (none)
[2025-12-03 05:33:44] 2025-12-03 04:33:13,186 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 05:33:44] 2025-12-03 04:33:13,186 | INFO     | pilot state: finished 
[2025-12-03 05:33:44] 2025-12-03 04:33:13,186 | INFO     | transexitcode: 0
[2025-12-03 05:33:44] 2025-12-03 04:33:13,186 | INFO     | exeerrorcode: 0
[2025-12-03 05:33:44] 2025-12-03 04:33:13,186 | INFO     | exeerrordiag: 
[2025-12-03 05:33:44] 2025-12-03 04:33:13,186 | INFO     | exitcode: 0
[2025-12-03 05:33:44] 2025-12-03 04:33:13,187 | INFO     | exitmsg: OK
[2025-12-03 05:33:44] 2025-12-03 04:33:13,187 | INFO     | cpuconsumptiontime: 124566 s
[2025-12-03 05:33:44] 2025-12-03 04:33:13,187 | INFO     | nevents: 1000
[2025-12-03 05:33:44] 2025-12-03 04:33:13,187 | INFO     | neventsw: 0
[2025-12-03 05:33:44] 2025-12-03 04:33:13,187 | INFO     | pid: 27392
[2025-12-03 05:33:44] 2025-12-03 04:33:13,187 | INFO     | pgrp: 27392
[2025-12-03 05:33:44] 2025-12-03 04:33:13,187 | INFO     | corecount: 8
[2025-12-03 05:33:44] 2025-12-03 04:33:13,187 | INFO     | event service: False
[2025-12-03 05:33:44] 2025-12-03 04:33:13,187 | INFO     | sizes: {0: 2284390, 2: 2284652, 11: 2284680, 16436: 2317410, 16437: 2317409, 16439: 2326673, 16443: 2326863}
[2025-12-03 05:33:44] 2025-12-03 04:33:13,187 | INFO     | --------------------------------------------------
[2025-12-03 05:33:44] 2025-12-03 04:33:13,187 | INFO     | 
[2025-12-03 05:33:44] 2025-12-03 04:33:13,187 | INFO     | executing command: ls -lF /tmp/job_10945936/atlas/pilot/slots/0
[2025-12-03 05:33:44] 2025-12-03 04:33:13,195 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 05:33:44] 2025-12-03 04:33:13,195 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 05:33:44] 2025-12-03 04:33:13,196 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 05:33:44] 2025-12-03 04:33:13,196 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 05:33:44] 2025-12-03 04:33:13,196 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 05:33:44] 2025-12-03 04:33:13,196 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 05:33:44] 2025-12-03 04:33:13,196 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 05:33:44] 2025-12-03 04:33:13,196 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 05:33:44] 2025-12-03 04:33:13,196 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 05:33:44] 2025-12-03 04:33:13,196 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 05:33:44] 2025-12-03 04:33:13,196 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 05:33:44] 2025-12-03 04:33:13,196 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 05:33:44] 2025-12-03 04:33:13,196 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 05:33:44] 2025-12-03 04:33:13,196 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 05:33:44] 2025-12-03 04:33:13,196 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 05:33:44] 2025-12-03 04:33:13,196 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 05:33:44] 2025-12-03 04:33:13,196 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 05:33:44] 2025-12-03 04:33:13,196 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 05:33:44] 2025-12-03 04:33:13,196 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 05:33:44] 2025-12-03 04:33:13,196 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 05:33:44] 2025-12-03 04:33:13,196 | INFO     | job 6893879188 has completed (purged errors)
[2025-12-03 05:33:44] 2025-12-03 04:33:13,196 | INFO     | overall cleanup function is called
[2025-12-03 05:33:44] 2025-12-03 04:33:14,204 | INFO     | --- collectZombieJob: --- 10, [27392]
[2025-12-03 05:33:44] 2025-12-03 04:33:14,204 | INFO     | zombie collector waiting for pid 27392
[2025-12-03 05:33:44] 2025-12-03 04:33:14,204 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 05:33:44] 2025-12-03 04:33:14,204 | INFO     | collected zombie processes
[2025-12-03 05:33:44] 2025-12-03 04:33:14,204 | INFO     | will attempt to kill all subprocesses of pid=27392
[2025-12-03 05:33:44] 2025-12-03 04:33:14,299 | INFO     | process IDs to be killed: [27392] (in reverse order)
[2025-12-03 05:33:44] 2025-12-03 04:33:14,331 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 05:33:44] 2025-12-03 04:33:14,331 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 05:33:44] 2025-12-03 04:33:14,334 | INFO     | did not find any defunct processes belonging to 27392
[2025-12-03 05:33:44] 2025-12-03 04:33:14,337 | INFO     | did not find any defunct processes belonging to 27392
[2025-12-03 05:33:44] 2025-12-03 04:33:14,338 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 05:33:44] 2025-12-03 04:33:14,338 | INFO     | ready for new job
[2025-12-03 05:33:44] 2025-12-03 04:33:14,338 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 05:33:44] 2025-12-03 04:33:14,339 | INFO     | ***************************************
[2025-12-03 05:33:44] 2025-12-03 04:33:14,339 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 05:33:44] 2025-12-03 04:33:14,339 | INFO     | ***************************************
[2025-12-03 05:33:44] 2025-12-03 04:33:14,339 | INFO     | 
[2025-12-03 05:33:44] 2025-12-03 04:33:14,354 | INFO     | architecture information:
[2025-12-03 05:33:44] 2025-12-03 04:33:14,354 | INFO     | executing command: cat /etc/os-release
[2025-12-03 05:33:44] 2025-12-03 04:33:14,359 | INFO     | cat /etc/os-release:
[2025-12-03 05:33:44] NAME="CentOS Linux"
[2025-12-03 05:33:44] VERSION="7 (Core)"
[2025-12-03 05:33:44] ID="centos"
[2025-12-03 05:33:44] ID_LIKE="rhel fedora"
[2025-12-03 05:33:44] VERSION_ID="7"
[2025-12-03 05:33:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 05:33:44] ANSI_COLOR="0;31"
[2025-12-03 05:33:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 05:33:44] HOME_URL="https://www.centos.org/"
[2025-12-03 05:33:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 05:33:44] 
[2025-12-03 05:33:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 05:33:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 05:33:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 05:33:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 05:33:44] 
[2025-12-03 05:33:44] 2025-12-03 04:33:14,359 | INFO     | ***************************************
[2025-12-03 05:33:44] 2025-12-03 04:33:14,862 | INFO     | executing command: df -mP /tmp/job_10945936/atlas/pilot/slots/0
[2025-12-03 05:33:44] 2025-12-03 04:33:14,869 | INFO     | sufficient remaining disk space (226185183232 B)
[2025-12-03 05:33:44] 2025-12-03 04:33:14,869 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 05:33:44] 2025-12-03 04:33:14,869 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 05:33:44] 2025-12-03 04:33:14,869 | INFO     | update_server=False
[2025-12-03 05:33:44] 2025-12-03 04:33:14,869 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 05:33:44] 2025-12-03 04:33:14,869 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 05:33:44] 2025-12-03 04:33:14,869 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 05:33:44] 2025-12-03 04:33:15,076 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 05:33:44] 2025-12-03 04:33:15,076 | INFO     | aborting loop
[2025-12-03 05:33:44] 2025-12-03 04:33:15,349 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 05:33:44] 2025-12-03 04:33:15,394 | INFO     | all data control threads have been joined
[2025-12-03 05:33:44] 2025-12-03 04:33:15,872 | INFO     | all payload control threads have been joined
[2025-12-03 05:33:44] 2025-12-03 04:33:15,872 | INFO     | [job] retrieve thread has finished
[2025-12-03 05:33:44] 2025-12-03 04:33:15,874 | INFO     | [job] queue monitor thread has finished
[2025-12-03 05:33:44] 2025-12-03 04:33:15,906 | INFO     | [job] validate thread has finished
[2025-12-03 05:33:44] 2025-12-03 04:33:16,062 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 05:33:44] 2025-12-03 04:33:16,082 | INFO     | [job] job monitor thread has finished
[2025-12-03 05:33:44] 2025-12-03 04:33:16,141 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 05:33:44] 2025-12-03 04:33:16,334 | INFO     | all job control threads have been joined
[2025-12-03 05:33:44] 2025-12-03 04:33:16,399 | INFO     | [data] control thread has finished
[2025-12-03 05:33:44] 2025-12-03 04:33:16,409 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 05:33:44] 2025-12-03 04:33:16,679 | INFO     | [payload] failed_post thread has finished
[2025-12-03 05:33:44] 2025-12-03 04:33:16,793 | INFO     | [data] copytool_in thread has finished
[2025-12-03 05:33:44] 2025-12-03 04:33:16,875 | INFO     | [data] copytool_out thread has finished
[2025-12-03 05:33:44] 2025-12-03 04:33:16,877 | INFO     | [payload] control thread has finished
[2025-12-03 05:33:44] 2025-12-03 04:33:17,258 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 05:33:44] 2025-12-03 04:33:17,339 | INFO     | [job] control thread has finished
[2025-12-03 05:33:44] 2025-12-03 04:33:17,397 | INFO     | [payload] validate_post thread has finished
[2025-12-03 05:33:44] 2025-12-03 04:33:19,354 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 05:33:44] 2025-12-03 04:33:23,793 | INFO     | [monitor] cgroup control has ended
[2025-12-03 05:33:44] 2025-12-03 04:33:24,387 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456065021696)>']
[2025-12-03 05:33:44] 2025-12-03 04:33:29,412 | INFO     | all workflow threads have been joined
[2025-12-03 05:33:44] 2025-12-03 04:33:29,412 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 05:33:44] 2025-12-03 04:33:29,412 | INFO     | traces error code: 0
[2025-12-03 05:33:44] 2025-12-03 04:33:29,412 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 05:33:44] 2025-12-03 04:33:44,807 | INFO     | PID=14803 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-03 05:33:44] 2025-12-03 04:33:44,807 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 05:33:44] 2025-12-03 04:33:44,807 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 05:33:44] 2025-12-03 04:33:44,807 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 05:33:44] 2025-12-03 04:33:44,807 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 05:33:44] 2025-12-03 04:33:44,807 | INFO     | [monitor] control thread has ended
[2025-12-03 05:33:44] 2025-12-03 04:33:44,860 [wrapper] ==== pilot stdout END ====
[2025-12-03 05:33:44] 2025-12-03 04:33:44,861 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 05:33:44] 2025-12-03 04:33:44,862 [wrapper] pilotpid: 14803
[2025-12-03 05:33:44] 2025-12-03 04:33:44,864 [wrapper] Pilot exit status: 0
[2025-12-03 05:33:44] 2025-12-03 04:33:44,868 [wrapper] pandaids: 6893879188
[2025-12-03 05:33:44] 2025-12-03 04:33:44,890 [wrapper] cleanup supervisor_pilot 15151 14804
[2025-12-03 05:33:44] 2025-12-03 04:33:44,891 [wrapper] Test setup, not cleaning
[2025-12-03 05:33:44] 2025-12-03 04:33:44,892 [wrapper] apfmon messages muted
[2025-12-03 05:33:44] 2025-12-03 04:33:44,893 [wrapper] ==== wrapper stdout END ====
[2025-12-03 05:33:44] 2025-12-03 04:33:44,894 [wrapper] ==== wrapper stderr END ====
[2025-12-03 05:33:44]  *** Error codes and diagnostics ***
[2025-12-03 05:33:44]     "exeErrorCode": 0,
[2025-12-03 05:33:44]     "exeErrorDiag": "",
[2025-12-03 05:33:44]     "pilotErrorCode": 0,
[2025-12-03 05:33:44]     "pilotErrorDiag": "",
[2025-12-03 05:33:44]  *** Listing of results directory ***
[2025-12-03 05:33:45] total 1324932
[2025-12-03 05:33:45] -rw------- 1 mf493845 unix-user    576529 Nov 20 20:04 pilot3.tar.gz
[2025-12-03 05:33:45] -rw------- 1 mf493845 unix-user      5112 Nov 20 20:10 queuedata.json
[2025-12-03 05:33:45] -rwx------ 1 mf493845 unix-user     36292 Nov 20 20:10 runpilot2-wrapper.sh
[2025-12-03 05:33:45] -rw------- 1 mf493845 unix-user       100 Dec  2 23:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 05:33:45] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  2 23:13 run_atlas
[2025-12-03 05:33:45] -rw------- 1 mf493845 unix-user       105 Dec  2 23:13 job.xml
[2025-12-03 05:33:45] -rw-r--r-- 2 mf493845 unix-user 412596406 Dec  3 00:58 EVNT.47493127._000817.pool.root.1
[2025-12-03 05:33:45] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 00:58 start_atlas.sh
[2025-12-03 05:33:45] drwxrwx--x 2 mf493845 unix-user       100 Dec  3 00:58 shared
[2025-12-03 05:33:45] -rw-r--r-- 2 mf493845 unix-user    590100 Dec  3 00:58 input.tar.gz
[2025-12-03 05:33:45] -rw------- 1 mf493845 unix-user      6391 Dec  3 00:58 init_data.xml
[2025-12-03 05:33:45] -rw------- 1 mf493845 unix-user         0 Dec  3 00:58 boinc_setup_complete
[2025-12-03 05:33:45] -rw------- 1 mf493845 unix-user      8192 Dec  3 00:58 boinc_mmap_file
[2025-12-03 05:33:45] -rw------- 1 mf493845 unix-user         0 Dec  3 00:58 boinc_lockfile
[2025-12-03 05:33:45] -rw------- 1 mf493845 unix-user      2785 Dec  3 00:58 pandaJob.out
[2025-12-03 05:33:45] -rw------- 1 mf493845 unix-user    989284 Dec  3 00:58 agis_schedconf.cvmfs.json
[2025-12-03 05:33:45] drwx------ 5 mf493845 unix-user       440 Dec  3 00:58 pilot3
[2025-12-03 05:33:45] -rw------- 1 mf493845 unix-user 932388819 Dec  3 05:32 HITS.47523449._008166.pool.root.1
[2025-12-03 05:33:45] -rw------- 1 mf493845 unix-user        95 Dec  3 05:33 pilot_heartbeat.json
[2025-12-03 05:33:45] -rw------- 1 mf493845 unix-user      1030 Dec  3 05:33 memory_monitor_summary.json
[2025-12-03 05:33:45] -rw------- 1 mf493845 unix-user   1516240 Dec  3 05:33 agis_ddmendpoints.agis.ALL.json
[2025-12-03 05:33:45] -rw------- 1 mf493845 unix-user   1565286 Dec  3 05:33 log.47523449._008166.job.log.tgz.1
[2025-12-03 05:33:45] -rw------- 1 mf493845 unix-user      8587 Dec  3 05:33 heartbeat.json
[2025-12-03 05:33:45] -rw------- 1 mf493845 unix-user       745 Dec  3 05:33 pilotlog.txt
[2025-12-03 05:33:45] -rw------- 1 mf493845 unix-user   2366356 Dec  3 05:33 log.47523449._008166.job.log.1
[2025-12-03 05:33:45] -rw------- 1 mf493845 unix-user       353 Dec  3 05:33 output.list
[2025-12-03 05:33:45] -rw------- 1 mf493845 unix-user       620 Dec  3 05:33 runtime_log
[2025-12-03 05:33:45] -rw------- 1 mf493845 unix-user   3952640 Dec  3 05:33 result.tar.gz
[2025-12-03 05:33:45] -rw------- 1 mf493845 unix-user      9221 Dec  3 05:33 runtime_log.err
[2025-12-03 05:33:45] -rw------- 1 mf493845 unix-user       650 Dec  3 05:33 d0lKDmOEPg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmNzGKDmWDlqzm.diag
[2025-12-03 05:33:45] -rw------- 1 mf493845 unix-user     21835 Dec  3 05:33 stderr.txt
[2025-12-03 05:33:45] HITS file was successfully produced:
[2025-12-03 05:33:45] -rw------- 1 mf493845 unix-user 932388819 Dec  3 05:32 shared/HITS.pool.root.1
[2025-12-03 05:33:45]  *** Contents of shared directory: ***
[2025-12-03 05:33:45] total 1317920
[2025-12-03 05:33:45] -rw-r--r-- 2 mf493845 unix-user 412596406 Dec  3 00:58 ATLAS.root_0
[2025-12-03 05:33:45] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 00:58 start_atlas.sh
[2025-12-03 05:33:45] -rw-r--r-- 2 mf493845 unix-user    590100 Dec  3 00:58 input.tar.gz
[2025-12-03 05:33:45] -rw------- 1 mf493845 unix-user 932388819 Dec  3 05:32 HITS.pool.root.1
[2025-12-03 05:33:45] -rw------- 1 mf493845 unix-user   3952640 Dec  3 05:33 result.tar.gz
05:33:46 (10843): run_atlas exited; CPU time 124776.404380
05:33:46 (10843): called boinc_finish(0)

</stderr_txt>
]]>

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