Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:38:56 (62589): wrapper (7.7.26015): starting
14:38:56 (62589): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 14:38:56] Arguments: --nthreads 8
[2025-12-02 14:38:56] Threads: 8
[2025-12-02 14:38:56] Checking for CVMFS
[2025-12-02 14:38:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 14:38:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 14:38:56] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 14:38:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 14:38:57] 2.13.3.0 7100 39057 221268 153567 3 518 38492264 40960000 53896 16776704 0 525983962 99.700 373684152 47809 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-02 14:38:57] CVMFS is ok
[2025-12-02 14:38:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 14:38:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 14:38:57] Further information can be found at the LHC@home message board.
[2025-12-02 14:38:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 14:38:57] Checking for apptainer binary...
[2025-12-02 14:38:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 14:38:57] Running /usr/bin/apptainer --version
[2025-12-02 14:38:57] apptainer version 1.4.4-1.el9
[2025-12-02 14:38:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 14:38:57] c8-6-10.aglt2.org
[2025-12-02 14:38:57] apptainer works
[2025-12-02 14:38:57] Set ATHENA_PROC_NUMBER=8
[2025-12-02 14:38:57] Set ATHENA_CORE_NUMBER=8
[2025-12-02 14:38:57] Starting ATLAS job with PandaID=6895333622
[2025-12-02 14:38:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 00:41:56]  *** The last 200 lines of the pilot log: ***
[2025-12-03 00:41:56] 2025-12-03 05:41:06,571 | INFO     | monitor loop #2275: job 0:6895333622 is in state 'finished'
[2025-12-03 00:41:56] 2025-12-03 05:41:06,571 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 00:41:56] 2025-12-03 05:41:07,799 | INFO     | time since job start (36106s) is within the limit (172800.0s)
[2025-12-03 00:41:56] 2025-12-03 05:41:09,079 | INFO     | monitor loop #2276: job 0:6895333622 is in state 'finished'
[2025-12-03 00:41:56] 2025-12-03 05:41:09,079 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 00:41:56] 2025-12-03 05:41:09,806 | INFO     | time since job start (36108s) is within the limit (172800.0s)
[2025-12-03 00:41:56] 2025-12-03 05:41:11,586 | INFO     | monitor loop #2277: job 0:6895333622 is in state 'finished'
[2025-12-03 00:41:56] 2025-12-03 05:41:11,586 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 00:41:56] 2025-12-03 05:41:11,813 | INFO     | time since job start (36110s) is within the limit (172800.0s)
[2025-12-03 00:41:56] 2025-12-03 05:41:14,112 | INFO     | monitor loop #2278: job 0:6895333622 is in state 'finished'
[2025-12-03 00:41:56] 2025-12-03 05:41:14,112 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 00:41:56] 2025-12-03 05:41:14,251 | INFO     | PID=66458 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-03 00:41:56] 2025-12-03 05:41:14,251 | INFO     | .. there are 55 such processes running
[2025-12-03 00:41:56] 2025-12-03 05:41:15,252 | INFO     | time since job start (36114s) is within the limit (172800.0s)
[2025-12-03 00:41:56] 2025-12-03 05:41:16,621 | INFO     | monitor loop #2279: job 0:6895333622 is in state 'finished'
[2025-12-03 00:41:56] 2025-12-03 05:41:16,621 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 00:41:56] 2025-12-03 05:41:17,260 | INFO     | time since job start (36116s) is within the limit (172800.0s)
[2025-12-03 00:41:56] 2025-12-03 05:41:17,899 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-03 00:41:56] 2025-12-03 05:41:17,908 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.984648437499
[2025-12-03 00:41:56] 2025-12-03 05:41:17,940 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6895333622/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 00:41:56] 2025-12-03 05:41:17,941 | INFO     | extracted standard info from prmon json
[2025-12-03 00:41:56] 2025-12-03 05:41:17,941 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 00:41:56] 2025-12-03 05:41:17,941 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 00:41:56] 2025-12-03 05:41:17,946 | INFO     | fitting pss+swap vs Time
[2025-12-03 00:41:56] 2025-12-03 05:41:17,947 | INFO     | sum of square deviations: 64014497853.9527
[2025-12-03 00:41:56] 2025-12-03 05:41:17,951 | INFO     | sum of deviations: -414983138793.53064
[2025-12-03 00:41:56] 2025-12-03 05:41:17,951 | INFO     | mean x: 1764722399.3079526
[2025-12-03 00:41:56] 2025-12-03 05:41:17,951 | INFO     | mean y: 2747617.453468697
[2025-12-03 00:41:56] 2025-12-03 05:41:17,951 | INFO     | intersect: 11442812991.938717
[2025-12-03 00:41:56] 2025-12-03 05:41:17,952 | INFO     | chi2: 23.19515582458285
[2025-12-03 00:41:56] 2025-12-03 05:41:17,952 | INFO     | sum of square deviations: 62403847592.825935
[2025-12-03 00:41:56] 2025-12-03 05:41:17,956 | INFO     | sum of deviations: -235161945742.49103
[2025-12-03 00:41:56] 2025-12-03 05:41:17,956 | INFO     | mean x: 1764722246.8191125
[2025-12-03 00:41:56] 2025-12-03 05:41:17,956 | INFO     | mean y: 2764634.901023891
[2025-12-03 00:41:56] 2025-12-03 05:41:17,956 | INFO     | intersect: 6652923771.959612
[2025-12-03 00:41:56] 2025-12-03 05:41:17,957 | INFO     | chi2: 19.830414543997065
[2025-12-03 00:41:56] 2025-12-03 05:41:17,957 | INFO     | current chi2=19.830414543997065 (change=14.50622408416736 %)
[2025-12-03 00:41:56] 2025-12-03 05:41:17,957 | INFO     | right removable region: 585
[2025-12-03 00:41:56] 2025-12-03 05:41:17,957 | INFO     | sum of square deviations: 62403376062.82599
[2025-12-03 00:41:56] 2025-12-03 05:41:17,961 | INFO     | sum of deviations: -567639374356.3379
[2025-12-03 00:41:56] 2025-12-03 05:41:17,961 | INFO     | mean x: 1764722551.8191125
[2025-12-03 00:41:56] 2025-12-03 05:41:17,961 | INFO     | mean y: 2762037.6194539247
[2025-12-03 00:41:56] 2025-12-03 05:41:17,961 | INFO     | intersect: 16055194909.49823
[2025-12-03 00:41:56] 2025-12-03 05:41:17,962 | INFO     | chi2: 21.094797862224542
[2025-12-03 00:41:56] 2025-12-03 05:41:17,962 | INFO     | current chi2=21.094797862224542 (change=9.055157802097167 %)
[2025-12-03 00:41:56] 2025-12-03 05:41:17,962 | INFO     | left removable region: 10
[2025-12-03 00:41:56] 2025-12-03 05:41:17,962 | INFO     | sum of square deviations: 58955124155.50617
[2025-12-03 00:41:56] 2025-12-03 05:41:17,966 | INFO     | sum of deviations: -379133928239.75793
[2025-12-03 00:41:56] 2025-12-03 05:41:17,966 | INFO     | mean x: 1764722521.3426087
[2025-12-03 00:41:56] 2025-12-03 05:41:17,966 | INFO     | mean y: 2785022.892173913
[2025-12-03 00:41:56] 2025-12-03 05:41:17,966 | INFO     | intersect: 11351521733.292353
[2025-12-03 00:41:56] 2025-12-03 05:41:17,967 | INFO     | chi2: 17.097594916583652
[2025-12-03 00:41:56] 2025-12-03 05:41:17,967 | INFO     | current memory leak: -6.43 B/s (using 575 data points, chi2=17.10)
[2025-12-03 00:41:56] 2025-12-03 05:41:17,968 | INFO     | could have reported an average CPU frequency of 3799 MHz (23 samples)
[2025-12-03 00:41:56] 2025-12-03 05:41:17,968 | INFO     | ..............................
[2025-12-03 00:41:56] 2025-12-03 05:41:17,968 | INFO     | . Timing measurements:
[2025-12-03 00:41:56] 2025-12-03 05:41:17,968 | INFO     | . get job = 0 s
[2025-12-03 00:41:56] 2025-12-03 05:41:17,968 | INFO     | . initial setup = 3 s
[2025-12-03 00:41:56] 2025-12-03 05:41:17,968 | INFO     | . payload setup = 14 s
[2025-12-03 00:41:56] 2025-12-03 05:41:17,968 | INFO     | . stage-in = 0 s
[2025-12-03 00:41:56] 2025-12-03 05:41:17,968 | INFO     | . payload execution = 36031 s
[2025-12-03 00:41:56] 2025-12-03 05:41:17,968 | INFO     | . stage-out = 9 s
[2025-12-03 00:41:56] 2025-12-03 05:41:17,968 | INFO     | . log creation = 3 s
[2025-12-03 00:41:56] 2025-12-03 05:41:17,968 | INFO     | ..............................
[2025-12-03 00:41:56] 2025-12-03 05:41:18,415 | INFO     | 
[2025-12-03 00:41:56] 2025-12-03 05:41:18,416 | INFO     | job summary report
[2025-12-03 00:41:56] 2025-12-03 05:41:18,416 | INFO     | --------------------------------------------------
[2025-12-03 00:41:56] 2025-12-03 05:41:18,416 | INFO     | PanDA job id: 6895333622
[2025-12-03 00:41:56] 2025-12-03 05:41:18,416 | INFO     | task id: 47556137
[2025-12-03 00:41:56] 2025-12-03 05:41:18,416 | INFO     | errors: (none)
[2025-12-03 00:41:56] 2025-12-03 05:41:18,416 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 00:41:56] 2025-12-03 05:41:18,416 | INFO     | pilot state: finished 
[2025-12-03 00:41:56] 2025-12-03 05:41:18,416 | INFO     | transexitcode: 0
[2025-12-03 00:41:56] 2025-12-03 05:41:18,416 | INFO     | exeerrorcode: 0
[2025-12-03 00:41:56] 2025-12-03 05:41:18,416 | INFO     | exeerrordiag: 
[2025-12-03 00:41:56] 2025-12-03 05:41:18,416 | INFO     | exitcode: 0
[2025-12-03 00:41:56] 2025-12-03 05:41:18,416 | INFO     | exitmsg: OK
[2025-12-03 00:41:56] 2025-12-03 05:41:18,416 | INFO     | cpuconsumptiontime: 138637 s
[2025-12-03 00:41:56] 2025-12-03 05:41:18,416 | INFO     | nevents: 1000
[2025-12-03 00:41:56] 2025-12-03 05:41:18,416 | INFO     | neventsw: 0
[2025-12-03 00:41:56] 2025-12-03 05:41:18,416 | INFO     | pid: 75879
[2025-12-03 00:41:56] 2025-12-03 05:41:18,417 | INFO     | pgrp: 75879
[2025-12-03 00:41:56] 2025-12-03 05:41:18,417 | INFO     | corecount: 8
[2025-12-03 00:41:56] 2025-12-03 05:41:18,417 | INFO     | event service: False
[2025-12-03 00:41:56] 2025-12-03 05:41:18,417 | INFO     | sizes: {0: 2284314, 10: 2284576, 11: 2284604, 36049: 2322898, 36050: 2322897, 36061: 2331947, 36064: 2332131, 36098: 2332377}
[2025-12-03 00:41:56] 2025-12-03 05:41:18,417 | INFO     | --------------------------------------------------
[2025-12-03 00:41:56] 2025-12-03 05:41:18,417 | INFO     | 
[2025-12-03 00:41:56] 2025-12-03 05:41:18,417 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-12-03 00:41:56] 2025-12-03 05:41:18,596 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 00:41:56] 2025-12-03 05:41:18,596 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 00:41:56] 2025-12-03 05:41:18,596 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 00:41:56] 2025-12-03 05:41:18,596 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 00:41:56] 2025-12-03 05:41:18,596 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 00:41:56] 2025-12-03 05:41:18,596 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 00:41:56] 2025-12-03 05:41:18,596 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 00:41:56] 2025-12-03 05:41:18,597 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 00:41:56] 2025-12-03 05:41:18,597 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 00:41:56] 2025-12-03 05:41:18,597 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 00:41:56] 2025-12-03 05:41:18,597 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 00:41:56] 2025-12-03 05:41:18,597 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 00:41:56] 2025-12-03 05:41:18,597 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 00:41:56] 2025-12-03 05:41:18,597 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 00:41:56] 2025-12-03 05:41:18,597 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 00:41:56] 2025-12-03 05:41:18,597 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 00:41:56] 2025-12-03 05:41:18,597 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 00:41:56] 2025-12-03 05:41:18,597 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 00:41:56] 2025-12-03 05:41:18,597 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 00:41:56] 2025-12-03 05:41:18,597 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 00:41:56] 2025-12-03 05:41:18,597 | INFO     | job 6895333622 has completed (purged errors)
[2025-12-03 00:41:56] 2025-12-03 05:41:18,597 | INFO     | overall cleanup function is called
[2025-12-03 00:41:56] 2025-12-03 05:41:19,665 | INFO     | --- collectZombieJob: --- 10, [75879]
[2025-12-03 00:41:56] 2025-12-03 05:41:19,665 | INFO     | zombie collector waiting for pid 75879
[2025-12-03 00:41:56] 2025-12-03 05:41:19,665 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 00:41:56] 2025-12-03 05:41:19,665 | INFO     | collected zombie processes
[2025-12-03 00:41:56] 2025-12-03 05:41:19,665 | INFO     | will attempt to kill all subprocesses of pid=75879
[2025-12-03 00:41:56] 2025-12-03 05:41:20,298 | INFO     | process IDs to be killed: [75879] (in reverse order)
[2025-12-03 00:41:56] 2025-12-03 05:41:21,514 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 00:41:56] 2025-12-03 05:41:21,521 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 00:41:56] 2025-12-03 05:41:21,631 | INFO     | did not find any defunct processes belonging to 75879
[2025-12-03 00:41:56] 2025-12-03 05:41:21,678 | INFO     | did not find any defunct processes belonging to 75879
[2025-12-03 00:41:56] 2025-12-03 05:41:21,683 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 00:41:56] 2025-12-03 05:41:21,687 | INFO     | ready for new job
[2025-12-03 00:41:56] 2025-12-03 05:41:21,687 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 00:41:56] 2025-12-03 05:41:21,689 | INFO     | ***************************************
[2025-12-03 00:41:56] 2025-12-03 05:41:21,689 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 00:41:56] 2025-12-03 05:41:21,689 | INFO     | ***************************************
[2025-12-03 00:41:56] 2025-12-03 05:41:21,689 | INFO     | 
[2025-12-03 00:41:56] 2025-12-03 05:41:21,694 | INFO     | architecture information:
[2025-12-03 00:41:56] 2025-12-03 05:41:21,702 | INFO     | executing command: cat /etc/os-release
[2025-12-03 00:41:56] 2025-12-03 05:41:21,878 | INFO     | cat /etc/os-release:
[2025-12-03 00:41:56] NAME="CentOS Linux"
[2025-12-03 00:41:56] VERSION="7 (Core)"
[2025-12-03 00:41:56] ID="centos"
[2025-12-03 00:41:56] ID_LIKE="rhel fedora"
[2025-12-03 00:41:56] VERSION_ID="7"
[2025-12-03 00:41:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 00:41:56] ANSI_COLOR="0;31"
[2025-12-03 00:41:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 00:41:56] HOME_URL="https://www.centos.org/"
[2025-12-03 00:41:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 00:41:56] 
[2025-12-03 00:41:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 00:41:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 00:41:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 00:41:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 00:41:56] 
[2025-12-03 00:41:56] 2025-12-03 05:41:21,878 | INFO     | ***************************************
[2025-12-03 00:41:56] 2025-12-03 05:41:22,382 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-12-03 00:41:56] 2025-12-03 05:41:22,472 | INFO     | sufficient remaining disk space (161450295296 B)
[2025-12-03 00:41:56] 2025-12-03 05:41:22,473 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 00:41:56] 2025-12-03 05:41:22,473 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 00:41:56] 2025-12-03 05:41:22,473 | INFO     | update_server=False
[2025-12-03 00:41:56] 2025-12-03 05:41:22,473 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 00:41:56] 2025-12-03 05:41:22,660 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 00:41:56] 2025-12-03 05:41:22,660 | INFO     | aborting loop
[2025-12-03 00:41:56] 2025-12-03 05:41:22,718 | INFO     | all data control threads have been joined
[2025-12-03 00:41:56] 2025-12-03 05:41:22,877 | INFO     | all job control threads have been joined
[2025-12-03 00:41:56] 2025-12-03 05:41:23,133 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 00:41:56] 2025-12-03 05:41:23,427 | INFO     | all payload control threads have been joined
[2025-12-03 00:41:56] 2025-12-03 05:41:23,479 | INFO     | [job] retrieve thread has finished
[2025-12-03 00:41:56] 2025-12-03 05:41:23,501 | INFO     | [job] validate thread has finished
[2025-12-03 00:41:56] 2025-12-03 05:41:23,502 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 00:41:56] 2025-12-03 05:41:23,521 | INFO     | [data] copytool_in thread has finished
[2025-12-03 00:41:56] 2025-12-03 05:41:23,541 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 00:41:56] 2025-12-03 05:41:23,666 | INFO     | [job] job monitor thread has finished
[2025-12-03 00:41:56] 2025-12-03 05:41:23,725 | INFO     | [data] control thread has finished
[2025-12-03 00:41:56] 2025-12-03 05:41:23,876 | INFO     | [payload] failed_post thread has finished
[2025-12-03 00:41:56] 2025-12-03 05:41:23,883 | INFO     | [job] control thread has finished
[2025-12-03 00:41:56] 2025-12-03 05:41:23,927 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 00:41:56] 2025-12-03 05:41:24,086 | INFO     | [payload] validate_post thread has finished
[2025-12-03 00:41:56] 2025-12-03 05:41:24,155 | INFO     | [job] queue monitor thread has finished
[2025-12-03 00:41:56] 2025-12-03 05:41:24,433 | INFO     | [payload] control thread has finished
[2025-12-03 00:41:56] 2025-12-03 05:41:24,735 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 00:41:56] 2025-12-03 05:41:24,982 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 00:41:56] 2025-12-03 05:41:25,679 | INFO     | [monitor] cgroup control has ended
[2025-12-03 00:41:56] 2025-12-03 05:41:25,925 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 00:41:56] 2025-12-03 05:41:25,934 | INFO     | [data] copytool_out thread has finished
[2025-12-03 00:41:56] 2025-12-03 05:41:29,934 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 00:41:56] 2025-12-03 05:41:31,113 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139885850281792)>', '<ExcThread(monitor, started 139885499361024)>']
[2025-12-03 00:41:56] 2025-12-03 05:41:36,147 | INFO     | all workflow threads have been joined
[2025-12-03 00:41:56] 2025-12-03 05:41:36,147 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 00:41:56] 2025-12-03 05:41:36,147 | INFO     | traces error code: 0
[2025-12-03 00:41:56] 2025-12-03 05:41:36,147 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 00:41:56] 2025-12-03 05:41:53,819 | INFO     | PID=66458 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-03 00:41:56] 2025-12-03 05:41:53,820 | INFO     | .. there are 55 such processes running
[2025-12-03 00:41:56] 2025-12-03 05:41:53,837 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 00:41:56] 2025-12-03 05:41:53,837 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 00:41:56] 2025-12-03 05:41:53,837 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 00:41:56] 2025-12-03 05:41:53,837 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 00:41:56] 2025-12-03 05:41:53,838 | INFO     | [monitor] control thread has ended
[2025-12-03 00:41:56] 2025-12-03 05:41:54,107 [wrapper] ==== pilot stdout END ====
[2025-12-03 00:41:56] 2025-12-03 05:41:54,129 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 00:41:56] 2025-12-03 05:41:54,159 [wrapper] pilotpid: 66458
[2025-12-03 00:41:56] 2025-12-03 05:41:54,169 [wrapper] Pilot exit status: 0
[2025-12-03 00:41:56] 2025-12-03 05:41:54,451 [wrapper] pandaids: 6895333622
[2025-12-03 00:41:56] 2025-12-03 05:41:55,385 [wrapper] cleanup supervisor_pilot 1156416 66459
[2025-12-03 00:41:56] 2025-12-03 05:41:55,397 [wrapper] Test setup, not cleaning
[2025-12-03 00:41:56] 2025-12-03 05:41:55,406 [wrapper] apfmon messages muted
[2025-12-03 00:41:56] 2025-12-03 05:41:55,426 [wrapper] ==== wrapper stdout END ====
[2025-12-03 00:41:56] 2025-12-03 05:41:55,440 [wrapper] ==== wrapper stderr END ====
[2025-12-03 00:41:56]  *** Error codes and diagnostics ***
[2025-12-03 00:41:56]     "exeErrorCode": 0,
[2025-12-03 00:41:56]     "exeErrorDiag": "",
[2025-12-03 00:41:56]     "pilotErrorCode": 0,
[2025-12-03 00:41:56]     "pilotErrorDiag": "",
[2025-12-03 00:41:56]  *** Listing of results directory ***
[2025-12-03 00:41:56] total 1311312
[2025-12-03 00:41:56] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 20:38 pilot3.tar.gz
[2025-12-03 00:41:56] -rwx------. 1 boincer umatlas     36292 Nov 21 20:51 runpilot2-wrapper.sh
[2025-12-03 00:41:56] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 20:51 queuedata.json
[2025-12-03 00:41:56] -rw-r--r--. 1 boincer umatlas       100 Dec  2 14:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 00:41:56] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  2 14:38 run_atlas
[2025-12-03 00:41:56] -rw-r--r--. 1 boincer umatlas       105 Dec  2 14:38 job.xml
[2025-12-03 00:41:56] -rw-r--r--. 2 boincer umatlas 410270550 Dec  2 14:38 EVNT.47483658._000209.pool.root.1
[2025-12-03 00:41:56] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 14:38 start_atlas.sh
[2025-12-03 00:41:56] drwxrwx--x. 2 boincer umatlas      4096 Dec  2 14:38 shared
[2025-12-03 00:41:56] -rw-r--r--. 2 boincer umatlas    590100 Dec  2 14:38 input.tar.gz
[2025-12-03 00:41:56] -rw-r--r--. 1 boincer umatlas         0 Dec  2 14:38 boinc_lockfile
[2025-12-03 00:41:56] -rw-r--r--. 1 boincer umatlas      2785 Dec  2 14:38 pandaJob.out
[2025-12-03 00:41:56] -rw-------. 1 boincer umatlas        57 Dec  2 14:38 setup.sh.local
[2025-12-03 00:41:56] -rw-------. 1 boincer umatlas    989224 Dec  2 14:39 agis_schedconf.cvmfs.json
[2025-12-03 00:41:56] drwx------. 5 boincer umatlas      4096 Dec  2 14:39 pilot3
[2025-12-03 00:41:56] -rw-r--r--. 1 boincer umatlas       533 Dec  3 00:08 boinc_task_state.xml
[2025-12-03 00:41:56] -rw-------. 1 boincer umatlas 915494264 Dec  3 00:38 HITS.47556137._002056.pool.root.1
[2025-12-03 00:41:56] -rw-r--r--. 1 boincer umatlas      7172 Dec  3 00:39 init_data.xml
[2025-12-03 00:41:56] -rw-------. 1 boincer umatlas      1070 Dec  3 00:40 memory_monitor_summary.json
[2025-12-03 00:41:56] -rw-------. 1 boincer umatlas   1516240 Dec  3 00:40 agis_ddmendpoints.agis.ALL.json
[2025-12-03 00:41:56] -rw-------. 1 boincer umatlas   1838614 Dec  3 00:40 log.47556137._002056.job.log.tgz.1
[2025-12-03 00:41:56] -rw-------. 1 boincer umatlas      7259 Dec  3 00:41 heartbeat.json
[2025-12-03 00:41:56] -rw-------. 1 boincer umatlas        95 Dec  3 00:41 pilot_heartbeat.json
[2025-12-03 00:41:56] -rw-------. 1 boincer umatlas       821 Dec  3 00:41 pilotlog.txt
[2025-12-03 00:41:56] -rw-------. 1 boincer umatlas   4716315 Dec  3 00:41 log.47556137._002056.job.log.1
[2025-12-03 00:41:56] -rw-r--r--. 1 boincer umatlas      8192 Dec  3 00:41 boinc_mmap_file
[2025-12-03 00:41:56] -rw-r--r--. 1 boincer umatlas        29 Dec  3 00:41 wrapper_checkpoint.txt
[2025-12-03 00:41:56] -rw-------. 1 boincer umatlas       353 Dec  3 00:41 output.list
[2025-12-03 00:41:56] -rw-r--r--. 1 boincer umatlas       620 Dec  3 00:41 runtime_log
[2025-12-03 00:41:56] -rw-------. 1 boincer umatlas   6574080 Dec  3 00:41 result.tar.gz
[2025-12-03 00:41:56] -rw-------. 1 boincer umatlas       665 Dec  3 00:41 UosMDmYxrg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm1qJKDmNScQLo.diag
[2025-12-03 00:41:56] -rw-r--r--. 1 boincer umatlas      9338 Dec  3 00:41 runtime_log.err
[2025-12-03 00:41:56] -rw-r--r--. 1 boincer umatlas     21835 Dec  3 00:41 stderr.txt
[2025-12-03 00:41:56] HITS file was successfully produced:
[2025-12-03 00:41:56] -rw-------. 1 boincer umatlas 915494264 Dec  3 00:38 shared/HITS.pool.root.1
[2025-12-03 00:41:56]  *** Contents of shared directory: ***
[2025-12-03 00:41:56] total 1301720
[2025-12-03 00:41:56] -rw-r--r--. 2 boincer umatlas 410270550 Dec  2 14:38 ATLAS.root_0
[2025-12-03 00:41:56] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 14:38 start_atlas.sh
[2025-12-03 00:41:56] -rw-r--r--. 2 boincer umatlas    590100 Dec  2 14:38 input.tar.gz
[2025-12-03 00:41:56] -rw-------. 1 boincer umatlas 915494264 Dec  3 00:38 HITS.pool.root.1
[2025-12-03 00:41:56] -rw-------. 1 boincer umatlas   6574080 Dec  3 00:41 result.tar.gz
00:41:57 (62589): run_atlas exited; CPU time 139299.928313
00:41:57 (62589): called boinc_finish(0)

</stderr_txt>
]]>

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