Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:01:11 (1180657): wrapper (7.7.26015): starting
15:01:11 (1180657): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 15:01:11] Arguments: --nthreads 8
[2025-12-02 15:01:11] Threads: 8
[2025-12-02 15:01:11] Checking for CVMFS
[2025-12-02 15:01:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 15:01:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 15:01:12] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 15:01:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 15:01:14] 2.13.3.0 12357 39096 324184 153567 2 1000 22470300 32503808 61274 16776704 0 626248137 99.631 553139196 45346 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-02 15:01:14] CVMFS is ok
[2025-12-02 15:01:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 15:01:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 15:01:14] Further information can be found at the LHC@home message board.
[2025-12-02 15:01:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 15:01:14] Checking for apptainer binary...
[2025-12-02 15:01:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 15:01:14] Running /usr/bin/apptainer --version
[2025-12-02 15:01:14] apptainer version 1.4.4-1.el9
[2025-12-02 15:01:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 15:01:15] c8-7-2.aglt2.org
[2025-12-02 15:01:15] apptainer works
[2025-12-02 15:01:15] Set ATHENA_PROC_NUMBER=8
[2025-12-02 15:01:15] Set ATHENA_CORE_NUMBER=8
[2025-12-02 15:01:15] Starting ATLAS job with PandaID=6905332108
[2025-12-02 15:01:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 02:40:05]  *** The last 200 lines of the pilot log: ***
[2025-12-03 02:40:05] 2025-12-03 07:38:45,695 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 02:40:05] 2025-12-03 07:38:46,398 | INFO     | time since job start (41764s) is within the limit (172800.0s)
[2025-12-03 02:40:05] 2025-12-03 07:38:48,200 | INFO     | monitor loop #2117: job 0:6905332108 is in state 'finished'
[2025-12-03 02:40:05] 2025-12-03 07:38:48,200 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 02:40:05] 2025-12-03 07:38:48,405 | INFO     | time since job start (41766s) is within the limit (172800.0s)
[2025-12-03 02:40:05] 2025-12-03 07:38:50,412 | INFO     | time since job start (41768s) is within the limit (172800.0s)
[2025-12-03 02:40:05] 2025-12-03 07:38:50,705 | INFO     | monitor loop #2118: job 0:6905332108 is in state 'finished'
[2025-12-03 02:40:05] 2025-12-03 07:38:50,705 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 02:40:05] 2025-12-03 07:38:52,419 | INFO     | time since job start (41770s) is within the limit (172800.0s)
[2025-12-03 02:40:05] 2025-12-03 07:38:53,212 | INFO     | monitor loop #2119: job 0:6905332108 is in state 'finished'
[2025-12-03 02:40:05] 2025-12-03 07:38:53,212 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 02:40:05] 2025-12-03 07:38:55,761 | INFO     | monitor loop #2120: job 0:6905332108 is in state 'finished'
[2025-12-03 02:40:05] 2025-12-03 07:38:55,761 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 02:40:05] 2025-12-03 07:38:55,946 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-03 02:40:05] 2025-12-03 07:38:55,955 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3754.49021875
[2025-12-03 02:40:05] 2025-12-03 07:38:55,979 | INFO     | using path: /tmp/boinchome/slots/9/PanDA_Pilot-6905332108/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 02:40:05] 2025-12-03 07:38:55,979 | INFO     | extracted standard info from prmon json
[2025-12-03 02:40:05] 2025-12-03 07:38:55,979 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 02:40:05] 2025-12-03 07:38:55,979 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 02:40:05] 2025-12-03 07:38:55,987 | INFO     | fitting pss+swap vs Time
[2025-12-03 02:40:05] 2025-12-03 07:38:55,987 | INFO     | sum of square deviations: 97924542823.431
[2025-12-03 02:40:05] 2025-12-03 07:38:55,993 | INFO     | sum of deviations: 1421895182374.882
[2025-12-03 02:40:05] 2025-12-03 07:38:55,993 | INFO     | mean x: 1764726723.71953
[2025-12-03 02:40:05] 2025-12-03 07:38:55,993 | INFO     | mean y: 3324184.6328928047
[2025-12-03 02:40:05] 2025-12-03 07:38:55,993 | INFO     | intersect: -25621063270.404625
[2025-12-03 02:40:05] 2025-12-03 07:38:55,993 | INFO     | chi2: 22.32789339107883
[2025-12-03 02:40:05] 2025-12-03 07:38:55,994 | INFO     | sum of square deviations: 95783631908.53716
[2025-12-03 02:40:05] 2025-12-03 07:38:55,999 | INFO     | sum of deviations: 1709168037802.7253
[2025-12-03 02:40:05] 2025-12-03 07:38:55,999 | INFO     | mean x: 1764726571.2322485
[2025-12-03 02:40:05] 2025-12-03 07:38:55,999 | INFO     | mean y: 3344651.0399408285
[2025-12-03 02:40:05] 2025-12-03 07:38:55,999 | INFO     | intersect: -31486526748.819977
[2025-12-03 02:40:05] 2025-12-03 07:38:56,000 | INFO     | chi2: 18.8283370676567
[2025-12-03 02:40:05] 2025-12-03 07:38:56,000 | INFO     | current chi2=18.8283370676567 (change=15.673472916259923 %)
[2025-12-03 02:40:05] 2025-12-03 07:38:56,000 | INFO     | right removable region: 675
[2025-12-03 02:40:05] 2025-12-03 07:38:56,000 | INFO     | sum of square deviations: 95782917598.537
[2025-12-03 02:40:05] 2025-12-03 07:38:56,006 | INFO     | sum of deviations: 1084091136732.7827
[2025-12-03 02:40:05] 2025-12-03 07:38:56,006 | INFO     | mean x: 1764726876.2322485
[2025-12-03 02:40:05] 2025-12-03 07:38:56,006 | INFO     | mean y: 3348239.523668639
[2025-12-03 02:40:05] 2025-12-03 07:38:56,006 | INFO     | intersect: -19970200418.663498
[2025-12-03 02:40:05] 2025-12-03 07:38:56,006 | INFO     | chi2: 17.043976093089416
[2025-12-03 02:40:05] 2025-12-03 07:38:56,006 | INFO     | current chi2=17.043976093089416 (change=23.66509551725385 %)
[2025-12-03 02:40:05] 2025-12-03 07:38:56,006 | INFO     | left removable region: 10
[2025-12-03 02:40:05] 2025-12-03 07:38:56,007 | INFO     | sum of square deviations: 91182549250.98346
[2025-12-03 02:40:05] 2025-12-03 07:38:56,012 | INFO     | sum of deviations: 1118800934330.9097
[2025-12-03 02:40:05] 2025-12-03 07:38:56,012 | INFO     | mean x: 1764726845.7609022
[2025-12-03 02:40:05] 2025-12-03 07:38:56,012 | INFO     | mean y: 3396660.0120300753
[2025-12-03 02:40:05] 2025-12-03 07:38:56,012 | INFO     | intersect: -21649628618.340137
[2025-12-03 02:40:05] 2025-12-03 07:38:56,013 | INFO     | chi2: 8.203537616007422
[2025-12-03 02:40:05] 2025-12-03 07:38:56,013 | INFO     | current memory leak: 12.27 B/s (using 665 data points, chi2=8.20)
[2025-12-03 02:40:05] 2025-12-03 07:38:56,013 | INFO     | could have reported an average CPU frequency of 3794 MHz (26 samples)
[2025-12-03 02:40:05] 2025-12-03 07:38:56,013 | INFO     | ..............................
[2025-12-03 02:40:05] 2025-12-03 07:38:56,013 | INFO     | . Timing measurements:
[2025-12-03 02:40:05] 2025-12-03 07:38:56,013 | INFO     | . get job = 0 s
[2025-12-03 02:40:05] 2025-12-03 07:38:56,014 | INFO     | . initial setup = 5 s
[2025-12-03 02:40:05] 2025-12-03 07:38:56,014 | INFO     | . payload setup = 105 s
[2025-12-03 02:40:05] 2025-12-03 07:38:56,014 | INFO     | . stage-in = 0 s
[2025-12-03 02:40:05] 2025-12-03 07:38:56,014 | INFO     | . payload execution = 41553 s
[2025-12-03 02:40:05] 2025-12-03 07:38:56,014 | INFO     | . stage-out = 5 s
[2025-12-03 02:40:05] 2025-12-03 07:38:56,014 | INFO     | . log creation = 0 s
[2025-12-03 02:40:05] 2025-12-03 07:38:56,014 | INFO     | ..............................
[2025-12-03 02:40:05] 2025-12-03 07:38:56,217 | INFO     | 
[2025-12-03 02:40:05] 2025-12-03 07:38:56,217 | INFO     | job summary report
[2025-12-03 02:40:05] 2025-12-03 07:38:56,221 | INFO     | --------------------------------------------------
[2025-12-03 02:40:05] 2025-12-03 07:38:56,221 | INFO     | PanDA job id: 6905332108
[2025-12-03 02:40:05] 2025-12-03 07:38:56,221 | INFO     | task id: 47530725
[2025-12-03 02:40:05] 2025-12-03 07:38:56,221 | INFO     | errors: (none)
[2025-12-03 02:40:05] 2025-12-03 07:38:56,221 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 02:40:05] 2025-12-03 07:38:56,221 | INFO     | pilot state: finished 
[2025-12-03 02:40:05] 2025-12-03 07:38:56,221 | INFO     | transexitcode: 0
[2025-12-03 02:40:05] 2025-12-03 07:38:56,221 | INFO     | exeerrorcode: 0
[2025-12-03 02:40:05] 2025-12-03 07:38:56,221 | INFO     | exeerrordiag: 
[2025-12-03 02:40:05] 2025-12-03 07:38:56,221 | INFO     | exitcode: 0
[2025-12-03 02:40:05] 2025-12-03 07:38:56,221 | INFO     | exitmsg: OK
[2025-12-03 02:40:05] 2025-12-03 07:38:56,221 | INFO     | cpuconsumptiontime: 119158 s
[2025-12-03 02:40:05] 2025-12-03 07:38:56,221 | INFO     | nevents: 1000
[2025-12-03 02:40:05] 2025-12-03 07:38:56,221 | INFO     | neventsw: 0
[2025-12-03 02:40:05] 2025-12-03 07:38:56,221 | INFO     | pid: 1254363
[2025-12-03 02:40:05] 2025-12-03 07:38:56,221 | INFO     | pgrp: 1254363
[2025-12-03 02:40:05] 2025-12-03 07:38:56,221 | INFO     | corecount: 8
[2025-12-03 02:40:05] 2025-12-03 07:38:56,222 | INFO     | event service: False
[2025-12-03 02:40:05] 2025-12-03 07:38:56,222 | INFO     | sizes: {0: 2284228, 1: 2284427, 11: 2284427, 22: 2284455, 33: 2284801, 44: 2284801, 41664: 2347469, 41670: 2356463, 41671: 2356519, 41693: 2356765}
[2025-12-03 02:40:05] 2025-12-03 07:38:56,222 | INFO     | --------------------------------------------------
[2025-12-03 02:40:05] 2025-12-03 07:38:56,222 | INFO     | 
[2025-12-03 02:40:05] 2025-12-03 07:38:56,222 | INFO     | executing command: ls -lF /tmp/boinchome/slots/9
[2025-12-03 02:40:05] 2025-12-03 07:38:56,442 | INFO     | PID=1209402 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-03 02:40:05] 2025-12-03 07:38:56,442 | INFO     | .. there are 41 such processes running
[2025-12-03 02:40:05] 2025-12-03 07:38:56,462 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 02:40:05] 2025-12-03 07:38:56,462 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 02:40:05] 2025-12-03 07:38:56,462 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 02:40:05] 2025-12-03 07:38:56,462 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 02:40:05] 2025-12-03 07:38:56,462 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 02:40:05] 2025-12-03 07:38:56,462 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 02:40:05] 2025-12-03 07:38:56,463 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 02:40:05] 2025-12-03 07:38:56,463 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 02:40:05] 2025-12-03 07:38:56,463 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 02:40:05] 2025-12-03 07:38:56,463 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 02:40:05] 2025-12-03 07:38:56,463 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 02:40:05] 2025-12-03 07:38:56,463 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 02:40:05] 2025-12-03 07:38:56,463 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 02:40:05] 2025-12-03 07:38:56,463 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 02:40:05] 2025-12-03 07:38:56,463 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 02:40:05] 2025-12-03 07:38:56,463 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 02:40:05] 2025-12-03 07:38:56,463 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 02:40:05] 2025-12-03 07:38:56,463 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 02:40:05] 2025-12-03 07:38:56,463 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 02:40:05] 2025-12-03 07:38:56,463 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 02:40:05] 2025-12-03 07:38:56,463 | INFO     | job 6905332108 has completed (purged errors)
[2025-12-03 02:40:05] 2025-12-03 07:38:56,463 | INFO     | overall cleanup function is called
[2025-12-03 02:40:05] 2025-12-03 07:38:57,499 | INFO     | --- collectZombieJob: --- 10, [1254363]
[2025-12-03 02:40:05] 2025-12-03 07:38:57,499 | INFO     | zombie collector waiting for pid 1254363
[2025-12-03 02:40:05] 2025-12-03 07:38:57,499 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 02:40:05] 2025-12-03 07:38:57,499 | INFO     | collected zombie processes
[2025-12-03 02:40:05] 2025-12-03 07:38:57,499 | INFO     | will attempt to kill all subprocesses of pid=1254363
[2025-12-03 02:40:05] 2025-12-03 07:38:59,270 | INFO     | process IDs to be killed: [1254363] (in reverse order)
[2025-12-03 02:40:05] 2025-12-03 07:38:59,591 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 02:40:05] 2025-12-03 07:38:59,592 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 02:40:05] 2025-12-03 07:38:59,656 | INFO     | did not find any defunct processes belonging to 1254363
[2025-12-03 02:40:05] 2025-12-03 07:38:59,838 | INFO     | did not find any defunct processes belonging to 1254363
[2025-12-03 02:40:05] 2025-12-03 07:38:59,854 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 02:40:05] 2025-12-03 07:38:59,855 | INFO     | ready for new job
[2025-12-03 02:40:05] 2025-12-03 07:38:59,855 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 02:40:05] 2025-12-03 07:38:59,857 | INFO     | ***************************************
[2025-12-03 02:40:05] 2025-12-03 07:38:59,857 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 02:40:05] 2025-12-03 07:38:59,857 | INFO     | ***************************************
[2025-12-03 02:40:05] 2025-12-03 07:38:59,857 | INFO     | 
[2025-12-03 02:40:05] 2025-12-03 07:38:59,895 | INFO     | architecture information:
[2025-12-03 02:40:05] 2025-12-03 07:38:59,908 | INFO     | executing command: cat /etc/os-release
[2025-12-03 02:40:05] 2025-12-03 07:39:00,047 | INFO     | cat /etc/os-release:
[2025-12-03 02:40:05] NAME="CentOS Linux"
[2025-12-03 02:40:05] VERSION="7 (Core)"
[2025-12-03 02:40:05] ID="centos"
[2025-12-03 02:40:05] ID_LIKE="rhel fedora"
[2025-12-03 02:40:05] VERSION_ID="7"
[2025-12-03 02:40:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 02:40:05] ANSI_COLOR="0;31"
[2025-12-03 02:40:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 02:40:05] HOME_URL="https://www.centos.org/"
[2025-12-03 02:40:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 02:40:05] 
[2025-12-03 02:40:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 02:40:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 02:40:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 02:40:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 02:40:05] 
[2025-12-03 02:40:05] 2025-12-03 07:39:00,047 | INFO     | ***************************************
[2025-12-03 02:40:05] 2025-12-03 07:39:00,551 | INFO     | executing command: df -mP /tmp/boinchome/slots/9
[2025-12-03 02:40:05] 2025-12-03 07:39:00,601 | INFO     | sufficient remaining disk space (89897566208 B)
[2025-12-03 02:40:05] 2025-12-03 07:39:00,601 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 02:40:05] 2025-12-03 07:39:00,602 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 02:40:05] 2025-12-03 07:39:00,602 | INFO     | update_server=False
[2025-12-03 02:40:05] 2025-12-03 07:39:00,602 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 02:40:05] 2025-12-03 07:39:00,818 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 02:40:05] 2025-12-03 07:39:00,823 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-03 02:40:05] 2025-12-03 07:39:00,823 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-03 02:40:05] 2025-12-03 07:39:00,823 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 02:40:05] 2025-12-03 07:39:00,823 | INFO     | will abort loop
[2025-12-03 02:40:05] 2025-12-03 07:39:01,079 | INFO     | all job control threads have been joined
[2025-12-03 02:40:05] 2025-12-03 07:39:01,232 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 02:40:05] 2025-12-03 07:39:01,293 | INFO     | all data control threads have been joined
[2025-12-03 02:40:05] 2025-12-03 07:39:01,518 | INFO     | all payload control threads have been joined
[2025-12-03 02:40:05] 2025-12-03 07:39:01,607 | INFO     | [job] retrieve thread has finished
[2025-12-03 02:40:05] 2025-12-03 07:39:01,829 | INFO     | [job] job monitor thread has finished
[2025-12-03 02:40:05] 2025-12-03 07:39:01,871 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 02:40:05] 2025-12-03 07:39:01,871 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 02:40:05] 2025-12-03 07:39:01,957 | INFO     | [job] validate thread has finished
[2025-12-03 02:40:05] 2025-12-03 07:39:02,085 | INFO     | [job] control thread has finished
[2025-12-03 02:40:05] 2025-12-03 07:39:02,138 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 02:40:05] 2025-12-03 07:39:02,206 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 02:40:05] 2025-12-03 07:39:02,238 | INFO     | [job] queue monitor thread has finished
[2025-12-03 02:40:05] 2025-12-03 07:39:02,299 | INFO     | [data] control thread has finished
[2025-12-03 02:40:05] 2025-12-03 07:39:02,332 | INFO     | [payload] validate_post thread has finished
[2025-12-03 02:40:05] 2025-12-03 07:39:02,348 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 02:40:05] 2025-12-03 07:39:02,382 | INFO     | [data] copytool_in thread has finished
[2025-12-03 02:40:05] 2025-12-03 07:39:02,508 | INFO     | [payload] failed_post thread has finished
[2025-12-03 02:40:05] 2025-12-03 07:39:02,524 | INFO     | [payload] control thread has finished
[2025-12-03 02:40:05] 2025-12-03 07:39:02,825 | INFO     | [data] copytool_out thread has finished
[2025-12-03 02:40:05] 2025-12-03 07:39:06,147 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 02:40:05] 2025-12-03 07:39:30,548 | INFO     | PID=1209402 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-03 02:40:05] 2025-12-03 07:39:30,549 | INFO     | .. there are 42 such processes running
[2025-12-03 02:40:05] 2025-12-03 07:39:30,549 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 02:40:05] 2025-12-03 07:39:30,549 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 02:40:05] 2025-12-03 07:39:30,573 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 02:40:05] 2025-12-03 07:39:58,630 | INFO     | [monitor] cgroup control has ended
[2025-12-03 02:40:05] 2025-12-03 07:39:58,963 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140518493976384)>', '<ExcThread(monitor, started 140518143014656)>']
[2025-12-03 02:40:05] 2025-12-03 07:39:59,767 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 02:40:05] 2025-12-03 07:39:59,767 | INFO     | [monitor] control thread has ended
[2025-12-03 02:40:05] 2025-12-03 07:40:03,989 | INFO     | all workflow threads have been joined
[2025-12-03 02:40:05] 2025-12-03 07:40:03,989 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 02:40:05] 2025-12-03 07:40:03,989 | INFO     | traces error code: 0
[2025-12-03 02:40:05] 2025-12-03 07:40:03,990 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 02:40:05] 2025-12-03 07:40:04,559 [wrapper] ==== pilot stdout END ====
[2025-12-03 02:40:05] 2025-12-03 07:40:04,588 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 02:40:05] 2025-12-03 07:40:04,749 [wrapper] pilotpid: 1209402
[2025-12-03 02:40:05] 2025-12-03 07:40:04,779 [wrapper] Pilot exit status: 0
[2025-12-03 02:40:05] 2025-12-03 07:40:04,896 [wrapper] pandaids: 6905332108
[2025-12-03 02:40:05] 2025-12-03 07:40:05,270 [wrapper] cleanup supervisor_pilot 3330538 1209403
[2025-12-03 02:40:05] 2025-12-03 07:40:05,278 [wrapper] Test setup, not cleaning
[2025-12-03 02:40:05] 2025-12-03 07:40:05,285 [wrapper] apfmon messages muted
[2025-12-03 02:40:05] 2025-12-03 07:40:05,313 [wrapper] ==== wrapper stdout END ====
[2025-12-03 02:40:05] 2025-12-03 07:40:05,323 [wrapper] ==== wrapper stderr END ====
[2025-12-03 02:40:05]  *** Error codes and diagnostics ***
[2025-12-03 02:40:05]     "exeErrorCode": 0,
[2025-12-03 02:40:05]     "exeErrorDiag": "",
[2025-12-03 02:40:05]     "pilotErrorCode": 0,
[2025-12-03 02:40:05]     "pilotErrorDiag": "",
[2025-12-03 02:40:05]  *** Listing of results directory ***
[2025-12-03 02:40:05] total 1070172
[2025-12-03 02:40:05] -rwx------. 1 boincer umatlas     36292 Nov 29 19:20 runpilot2-wrapper.sh
[2025-12-03 02:40:05] -rw-r--r--. 1 boincer umatlas    576529 Nov 29 19:24 pilot3.tar.gz
[2025-12-03 02:40:05] -rw-r--r--. 1 boincer umatlas      5112 Nov 29 19:24 queuedata.json
[2025-12-03 02:40:05] -rw-r--r--. 1 boincer umatlas       100 Dec  2 15:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 02:40:05] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  2 15:01 run_atlas
[2025-12-03 02:40:05] -rw-r--r--. 1 boincer umatlas       105 Dec  2 15:01 job.xml
[2025-12-03 02:40:05] -rw-r--r--. 2 boincer umatlas 378499267 Dec  2 15:01 EVNT.47530720._000041.pool.root.1
[2025-12-03 02:40:05] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 15:01 start_atlas.sh
[2025-12-03 02:40:05] drwxrwx--x. 2 boincer umatlas      4096 Dec  2 15:01 shared
[2025-12-03 02:40:05] -rw-r--r--. 2 boincer umatlas    590130 Dec  2 15:01 input.tar.gz
[2025-12-03 02:40:05] -rw-r--r--. 1 boincer umatlas         0 Dec  2 15:01 boinc_lockfile
[2025-12-03 02:40:05] -rw-r--r--. 1 boincer umatlas      2878 Dec  2 15:01 pandaJob.out
[2025-12-03 02:40:05] -rw-------. 1 boincer umatlas        57 Dec  2 15:01 setup.sh.local
[2025-12-03 02:40:05] -rw-------. 1 boincer umatlas    989224 Dec  2 15:02 agis_schedconf.cvmfs.json
[2025-12-03 02:40:05] drwx------. 5 boincer umatlas      4096 Dec  2 15:02 pilot3
[2025-12-03 02:40:05] -rw-r--r--. 1 boincer umatlas       532 Dec  3 02:25 boinc_task_state.xml
[2025-12-03 02:40:05] -rw-r--r--. 1 boincer umatlas      7171 Dec  3 02:37 init_data.xml
[2025-12-03 02:40:05] -rw-------. 1 boincer umatlas 700024756 Dec  3 02:37 HITS.47530725._001851.pool.root.1
[2025-12-03 02:40:05] -rw-------. 1 boincer umatlas      1060 Dec  3 02:38 memory_monitor_summary.json
[2025-12-03 02:40:05] -rw-------. 1 boincer umatlas   1516240 Dec  3 02:38 agis_ddmendpoints.agis.ALL.json
[2025-12-03 02:40:05] -rw-------. 1 boincer umatlas   1940062 Dec  3 02:38 log.47530725._001851.job.log.tgz.1
[2025-12-03 02:40:05] -rw-------. 1 boincer umatlas     27812 Dec  3 02:38 heartbeat.json
[2025-12-03 02:40:05] -rw-------. 1 boincer umatlas        95 Dec  3 02:39 pilot_heartbeat.json
[2025-12-03 02:40:05] -rw-r--r--. 1 boincer umatlas      8192 Dec  3 02:40 boinc_mmap_file
[2025-12-03 02:40:05] -rw-r--r--. 1 boincer umatlas        29 Dec  3 02:40 wrapper_checkpoint.txt
[2025-12-03 02:40:05] -rw-------. 1 boincer umatlas      5010 Dec  3 02:40 pilotlog.txt
[2025-12-03 02:40:05] -rw-------. 1 boincer umatlas   4744146 Dec  3 02:40 log.47530725._001851.job.log.1
[2025-12-03 02:40:05] -rw-------. 1 boincer umatlas       353 Dec  3 02:40 output.list
[2025-12-03 02:40:05] -rw-r--r--. 1 boincer umatlas       620 Dec  3 02:40 runtime_log
[2025-12-03 02:40:05] -rw-------. 1 boincer umatlas   6727680 Dec  3 02:40 result.tar.gz
[2025-12-03 02:40:05] -rw-r--r--. 1 boincer umatlas      9333 Dec  3 02:40 runtime_log.err
[2025-12-03 02:40:05] -rw-------. 1 boincer umatlas       661 Dec  3 02:40 pSENDmZMkj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmiEMKDm45mIUn.diag
[2025-12-03 02:40:05] -rw-r--r--. 1 boincer umatlas     21861 Dec  3 02:40 stderr.txt
[2025-12-03 02:40:05] HITS file was successfully produced:
[2025-12-03 02:40:05] -rw-------. 1 boincer umatlas 700024756 Dec  3 02:37 shared/HITS.pool.root.1
[2025-12-03 02:40:05]  *** Contents of shared directory: ***
[2025-12-03 02:40:05] total 1060428
[2025-12-03 02:40:05] -rw-r--r--. 2 boincer umatlas 378499267 Dec  2 15:01 ATLAS.root_0
[2025-12-03 02:40:05] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 15:01 start_atlas.sh
[2025-12-03 02:40:05] -rw-r--r--. 2 boincer umatlas    590130 Dec  2 15:01 input.tar.gz
[2025-12-03 02:40:05] -rw-------. 1 boincer umatlas 700024756 Dec  3 02:37 HITS.pool.root.1
[2025-12-03 02:40:05] -rw-------. 1 boincer umatlas   6727680 Dec  3 02:40 result.tar.gz
02:40:07 (1180657): run_atlas exited; CPU time 120102.241437
02:40:07 (1180657): called boinc_finish(0)

</stderr_txt>
]]>

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