Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:39:06 (2943226): wrapper (7.7.26015): starting
14:39:06 (2943226): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 14:39:06] Arguments: --nthreads 8
[2025-12-02 14:39:06] Threads: 8
[2025-12-02 14:39:06] Checking for CVMFS
[2025-12-02 14:39:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 14:39:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 14:39:07] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 14:39:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 14:39:09] 2.13.3.0 10223 39099 267140 153567 1 540 37433635 40960000 55575 16776704 0 502612726 99.742 336764763 49761 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-02 14:39:09] CVMFS is ok
[2025-12-02 14:39:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 14:39:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 14:39:09] Further information can be found at the LHC@home message board.
[2025-12-02 14:39:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 14:39:09] Checking for apptainer binary...
[2025-12-02 14:39:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 14:39:09] Running /usr/bin/apptainer --version
[2025-12-02 14:39:09] apptainer version 1.4.4-1.el9
[2025-12-02 14:39:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 14:39:09] c8-7-6.aglt2.org
[2025-12-02 14:39:09] apptainer works
[2025-12-02 14:39:10] Set ATHENA_PROC_NUMBER=8
[2025-12-02 14:39:10] Set ATHENA_CORE_NUMBER=8
[2025-12-02 14:39:10] Starting ATLAS job with PandaID=6897987113
[2025-12-02 14:39:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 00:15:44]  *** The last 200 lines of the pilot log: ***
[2025-12-03 00:15:44] 2025-12-03 05:14:54,294 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 00:15:44] 2025-12-03 05:14:55,352 | INFO     | time since job start (34459s) is within the limit (172800.0s)
[2025-12-03 00:15:44] 2025-12-03 05:14:56,815 | INFO     | monitor loop #1910: job 0:6897987113 is in state 'finished'
[2025-12-03 00:15:44] 2025-12-03 05:14:56,815 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 00:15:44] 2025-12-03 05:14:59,006 | INFO     | PID=2960563 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-03 00:15:44] 2025-12-03 05:14:59,006 | INFO     | .. there are 54 such processes running
[2025-12-03 00:15:44] 2025-12-03 05:14:59,458 | INFO     | monitor loop #1911: job 0:6897987113 is in state 'finished'
[2025-12-03 00:15:44] 2025-12-03 05:14:59,458 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 00:15:44] 2025-12-03 05:15:00,007 | INFO     | time since job start (34464s) is within the limit (172800.0s)
[2025-12-03 00:15:44] 2025-12-03 05:15:01,967 | INFO     | monitor loop #1912: job 0:6897987113 is in state 'finished'
[2025-12-03 00:15:44] 2025-12-03 05:15:01,967 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 00:15:44] 2025-12-03 05:15:02,015 | INFO     | time since job start (34466s) is within the limit (172800.0s)
[2025-12-03 00:15:44] 2025-12-03 05:15:04,032 | INFO     | time since job start (34468s) is within the limit (172800.0s)
[2025-12-03 00:15:44] 2025-12-03 05:15:04,472 | INFO     | monitor loop #1913: job 0:6897987113 is in state 'finished'
[2025-12-03 00:15:44] 2025-12-03 05:15:04,472 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 00:15:44] 2025-12-03 05:15:05,429 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-03 00:15:44] 2025-12-03 05:15:05,438 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3767.028328125
[2025-12-03 00:15:44] 2025-12-03 05:15:05,464 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6897987113/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 00:15:44] 2025-12-03 05:15:05,465 | INFO     | extracted standard info from prmon json
[2025-12-03 00:15:44] 2025-12-03 05:15:05,465 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 00:15:44] 2025-12-03 05:15:05,465 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 00:15:44] 2025-12-03 05:15:05,475 | INFO     | fitting pss+swap vs Time
[2025-12-03 00:15:44] 2025-12-03 05:15:05,481 | INFO     | sum of square deviations: 54745586674.72023
[2025-12-03 00:15:44] 2025-12-03 05:15:05,503 | INFO     | sum of deviations: 784977765729.6974
[2025-12-03 00:15:44] 2025-12-03 05:15:05,504 | INFO     | mean x: 1764721763.087344
[2025-12-03 00:15:44] 2025-12-03 05:15:05,504 | INFO     | mean y: 3210650.393939394
[2025-12-03 00:15:44] 2025-12-03 05:15:05,504 | INFO     | intersect: -25300515747.74781
[2025-12-03 00:15:44] 2025-12-03 05:15:05,504 | INFO     | chi2: 34.825869099835
[2025-12-03 00:15:44] 2025-12-03 05:15:05,505 | INFO     | sum of square deviations: 53295107302.73927
[2025-12-03 00:15:44] 2025-12-03 05:15:05,512 | INFO     | sum of deviations: 993295057128.4363
[2025-12-03 00:15:44] 2025-12-03 05:15:05,513 | INFO     | mean x: 1764721610.606115
[2025-12-03 00:15:44] 2025-12-03 05:15:05,513 | INFO     | mean y: 3232541.6366906473
[2025-12-03 00:15:44] 2025-12-03 05:15:05,542 | INFO     | intersect: -32887014644.950577
[2025-12-03 00:15:44] 2025-12-03 05:15:05,543 | INFO     | chi2: 31.335736722486093
[2025-12-03 00:15:44] 2025-12-03 05:15:05,543 | INFO     | current chi2=31.335736722486093 (change=10.021666271540216 %)
[2025-12-03 00:15:44] 2025-12-03 05:15:05,543 | INFO     | right removable region: 555
[2025-12-03 00:15:44] 2025-12-03 05:15:05,543 | INFO     | sum of square deviations: 53294392992.73931
[2025-12-03 00:15:44] 2025-12-03 05:15:05,570 | INFO     | sum of deviations: 514311821868.4251
[2025-12-03 00:15:44] 2025-12-03 05:15:05,570 | INFO     | mean x: 1764721915.606115
[2025-12-03 00:15:44] 2025-12-03 05:15:05,570 | INFO     | mean y: 3239095.0521582733
[2025-12-03 00:15:44] 2025-12-03 05:15:05,570 | INFO     | intersect: -17027020422.68303
[2025-12-03 00:15:44] 2025-12-03 05:15:05,571 | INFO     | chi2: 29.54117671032293
[2025-12-03 00:15:44] 2025-12-03 05:15:05,571 | INFO     | current chi2=29.54117671032293 (change=15.174617392497783 %)
[2025-12-03 00:15:44] 2025-12-03 05:15:05,571 | INFO     | left removable region: 10
[2025-12-03 00:15:44] 2025-12-03 05:15:05,571 | INFO     | sum of square deviations: 50193327158.96169
[2025-12-03 00:15:44] 2025-12-03 05:15:05,584 | INFO     | sum of deviations: 515811931452.8758
[2025-12-03 00:15:44] 2025-12-03 05:15:05,584 | INFO     | mean x: 1764721885.148624
[2025-12-03 00:15:44] 2025-12-03 05:15:05,584 | INFO     | mean y: 3293392.766972477
[2025-12-03 00:15:44] 2025-12-03 05:15:05,584 | INFO     | intersect: -18131878264.072475
[2025-12-03 00:15:44] 2025-12-03 05:15:05,585 | INFO     | chi2: 20.914838358320804
[2025-12-03 00:15:44] 2025-12-03 05:15:05,585 | INFO     | current memory leak: 10.28 B/s (using 545 data points, chi2=20.91)
[2025-12-03 00:15:44] 2025-12-03 05:15:05,585 | INFO     | could have reported an average CPU frequency of 3786 MHz (22 samples)
[2025-12-03 00:15:44] 2025-12-03 05:15:05,586 | INFO     | ..............................
[2025-12-03 00:15:44] 2025-12-03 05:15:05,586 | INFO     | . Timing measurements:
[2025-12-03 00:15:44] 2025-12-03 05:15:05,604 | INFO     | . get job = 0 s
[2025-12-03 00:15:44] 2025-12-03 05:15:05,604 | INFO     | . initial setup = 5 s
[2025-12-03 00:15:44] 2025-12-03 05:15:05,604 | INFO     | . payload setup = 114 s
[2025-12-03 00:15:44] 2025-12-03 05:15:05,604 | INFO     | . stage-in = 0 s
[2025-12-03 00:15:44] 2025-12-03 05:15:05,604 | INFO     | . payload execution = 34218 s
[2025-12-03 00:15:44] 2025-12-03 05:15:05,604 | INFO     | . stage-out = 7 s
[2025-12-03 00:15:44] 2025-12-03 05:15:05,604 | INFO     | . log creation = 1 s
[2025-12-03 00:15:44] 2025-12-03 05:15:05,604 | INFO     | ..............................
[2025-12-03 00:15:44] 2025-12-03 05:15:05,879 | INFO     | 
[2025-12-03 00:15:44] 2025-12-03 05:15:05,879 | INFO     | job summary report
[2025-12-03 00:15:44] 2025-12-03 05:15:05,879 | INFO     | --------------------------------------------------
[2025-12-03 00:15:44] 2025-12-03 05:15:05,879 | INFO     | PanDA job id: 6897987113
[2025-12-03 00:15:44] 2025-12-03 05:15:05,879 | INFO     | task id: 47538121
[2025-12-03 00:15:44] 2025-12-03 05:15:05,879 | INFO     | errors: (none)
[2025-12-03 00:15:44] 2025-12-03 05:15:05,879 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 00:15:44] 2025-12-03 05:15:05,879 | INFO     | pilot state: finished 
[2025-12-03 00:15:44] 2025-12-03 05:15:05,879 | INFO     | transexitcode: 0
[2025-12-03 00:15:44] 2025-12-03 05:15:05,879 | INFO     | exeerrorcode: 0
[2025-12-03 00:15:44] 2025-12-03 05:15:05,879 | INFO     | exeerrordiag: 
[2025-12-03 00:15:44] 2025-12-03 05:15:05,879 | INFO     | exitcode: 0
[2025-12-03 00:15:44] 2025-12-03 05:15:05,879 | INFO     | exitmsg: OK
[2025-12-03 00:15:44] 2025-12-03 05:15:05,879 | INFO     | cpuconsumptiontime: 116397 s
[2025-12-03 00:15:44] 2025-12-03 05:15:05,880 | INFO     | nevents: 1000
[2025-12-03 00:15:44] 2025-12-03 05:15:05,880 | INFO     | neventsw: 0
[2025-12-03 00:15:44] 2025-12-03 05:15:05,880 | INFO     | pid: 3012722
[2025-12-03 00:15:44] 2025-12-03 05:15:05,880 | INFO     | pgrp: 3012722
[2025-12-03 00:15:44] 2025-12-03 05:15:05,880 | INFO     | corecount: 8
[2025-12-03 00:15:44] 2025-12-03 05:15:05,880 | INFO     | event service: False
[2025-12-03 00:15:44] 2025-12-03 05:15:05,880 | INFO     | sizes: {0: 2284224, 1: 2284479, 12: 2284479, 23: 2284507, 34: 2284535, 42: 2284825, 44: 2285009, 34337: 2343520, 34345: 2352514, 34346: 2352570, 34382: 2352816}
[2025-12-03 00:15:44] 2025-12-03 05:15:05,880 | INFO     | --------------------------------------------------
[2025-12-03 00:15:44] 2025-12-03 05:15:05,880 | INFO     | 
[2025-12-03 00:15:44] 2025-12-03 05:15:05,880 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-12-03 00:15:44] 2025-12-03 05:15:06,036 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 00:15:44] 2025-12-03 05:15:06,036 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 00:15:44] 2025-12-03 05:15:06,036 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 00:15:44] 2025-12-03 05:15:06,036 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 00:15:44] 2025-12-03 05:15:06,036 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 00:15:44] 2025-12-03 05:15:06,036 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 00:15:44] 2025-12-03 05:15:06,037 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 00:15:44] 2025-12-03 05:15:06,037 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 00:15:44] 2025-12-03 05:15:06,037 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 00:15:44] 2025-12-03 05:15:06,037 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 00:15:44] 2025-12-03 05:15:06,037 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 00:15:44] 2025-12-03 05:15:06,037 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 00:15:44] 2025-12-03 05:15:06,037 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 00:15:44] 2025-12-03 05:15:06,037 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 00:15:44] 2025-12-03 05:15:06,037 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 00:15:44] 2025-12-03 05:15:06,037 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 00:15:44] 2025-12-03 05:15:06,037 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 00:15:44] 2025-12-03 05:15:06,037 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 00:15:44] 2025-12-03 05:15:06,037 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 00:15:44] 2025-12-03 05:15:06,037 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 00:15:44] 2025-12-03 05:15:06,037 | INFO     | job 6897987113 has completed (purged errors)
[2025-12-03 00:15:44] 2025-12-03 05:15:06,037 | INFO     | overall cleanup function is called
[2025-12-03 00:15:44] 2025-12-03 05:15:07,086 | INFO     | --- collectZombieJob: --- 10, [3012722]
[2025-12-03 00:15:44] 2025-12-03 05:15:07,086 | INFO     | zombie collector waiting for pid 3012722
[2025-12-03 00:15:44] 2025-12-03 05:15:07,086 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 00:15:44] 2025-12-03 05:15:07,086 | INFO     | collected zombie processes
[2025-12-03 00:15:44] 2025-12-03 05:15:07,086 | INFO     | will attempt to kill all subprocesses of pid=3012722
[2025-12-03 00:15:44] 2025-12-03 05:15:10,205 | INFO     | process IDs to be killed: [3012722] (in reverse order)
[2025-12-03 00:15:44] 2025-12-03 05:15:10,713 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 00:15:44] 2025-12-03 05:15:10,713 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 00:15:44] 2025-12-03 05:15:10,756 | INFO     | did not find any defunct processes belonging to 3012722
[2025-12-03 00:15:44] 2025-12-03 05:15:10,822 | INFO     | did not find any defunct processes belonging to 3012722
[2025-12-03 00:15:44] 2025-12-03 05:15:10,838 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 00:15:44] 2025-12-03 05:15:10,838 | INFO     | ready for new job
[2025-12-03 00:15:44] 2025-12-03 05:15:10,838 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 00:15:44] 2025-12-03 05:15:10,848 | INFO     | ***************************************
[2025-12-03 00:15:44] 2025-12-03 05:15:10,878 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 00:15:44] 2025-12-03 05:15:10,878 | INFO     | ***************************************
[2025-12-03 00:15:44] 2025-12-03 05:15:10,878 | INFO     | 
[2025-12-03 00:15:44] 2025-12-03 05:15:10,895 | INFO     | architecture information:
[2025-12-03 00:15:44] 2025-12-03 05:15:10,900 | INFO     | executing command: cat /etc/os-release
[2025-12-03 00:15:44] 2025-12-03 05:15:11,008 | INFO     | cat /etc/os-release:
[2025-12-03 00:15:44] NAME="CentOS Linux"
[2025-12-03 00:15:44] VERSION="7 (Core)"
[2025-12-03 00:15:44] ID="centos"
[2025-12-03 00:15:44] ID_LIKE="rhel fedora"
[2025-12-03 00:15:44] VERSION_ID="7"
[2025-12-03 00:15:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 00:15:44] ANSI_COLOR="0;31"
[2025-12-03 00:15:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 00:15:44] HOME_URL="https://www.centos.org/"
[2025-12-03 00:15:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 00:15:44] 
[2025-12-03 00:15:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 00:15:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 00:15:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 00:15:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 00:15:44] 
[2025-12-03 00:15:44] 2025-12-03 05:15:11,008 | INFO     | ***************************************
[2025-12-03 00:15:44] 2025-12-03 05:15:11,512 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-12-03 00:15:44] 2025-12-03 05:15:11,594 | INFO     | sufficient remaining disk space (163463561216 B)
[2025-12-03 00:15:44] 2025-12-03 05:15:11,594 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 00:15:44] 2025-12-03 05:15:11,594 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 00:15:44] 2025-12-03 05:15:11,594 | INFO     | update_server=False
[2025-12-03 00:15:44] 2025-12-03 05:15:11,595 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 00:15:44] 2025-12-03 05:15:11,595 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 00:15:44] 2025-12-03 05:15:12,010 | INFO     | all data control threads have been joined
[2025-12-03 00:15:44] 2025-12-03 05:15:12,010 | INFO     | all job control threads have been joined
[2025-12-03 00:15:44] 2025-12-03 05:15:12,035 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-03 00:15:44] 2025-12-03 05:15:12,035 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-03 00:15:44] 2025-12-03 05:15:12,035 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 00:15:44] 2025-12-03 05:15:12,035 | INFO     | will abort loop
[2025-12-03 00:15:44] 2025-12-03 05:15:12,157 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 00:15:44] 2025-12-03 05:15:12,370 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 00:15:44] 2025-12-03 05:15:12,607 | INFO     | [job] retrieve thread has finished
[2025-12-03 00:15:44] 2025-12-03 05:15:12,607 | INFO     | [job] queue monitor thread has finished
[2025-12-03 00:15:44] 2025-12-03 05:15:12,682 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 00:15:44] 2025-12-03 05:15:12,964 | INFO     | all payload control threads have been joined
[2025-12-03 00:15:44] 2025-12-03 05:15:13,017 | INFO     | [data] control thread has finished
[2025-12-03 00:15:44] 2025-12-03 05:15:13,017 | INFO     | [job] control thread has finished
[2025-12-03 00:15:44] 2025-12-03 05:15:13,060 | INFO     | [job] job monitor thread has finished
[2025-12-03 00:15:44] 2025-12-03 05:15:13,532 | INFO     | [payload] failed_post thread has finished
[2025-12-03 00:15:44] 2025-12-03 05:15:13,714 | INFO     | [data] copytool_in thread has finished
[2025-12-03 00:15:44] 2025-12-03 05:15:13,777 | INFO     | [job] validate thread has finished
[2025-12-03 00:15:44] 2025-12-03 05:15:13,777 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 00:15:44] 2025-12-03 05:15:13,778 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 00:15:44] 2025-12-03 05:15:13,778 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 00:15:44] 2025-12-03 05:15:13,970 | INFO     | [payload] control thread has finished
[2025-12-03 00:15:44] 2025-12-03 05:15:14,001 | INFO     | [payload] validate_post thread has finished
[2025-12-03 00:15:44] 2025-12-03 05:15:14,164 | INFO     | [data] copytool_out thread has finished
[2025-12-03 00:15:44] 2025-12-03 05:15:16,395 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 00:15:44] 2025-12-03 05:15:36,521 | INFO     | [monitor] cgroup control has ended
[2025-12-03 00:15:44] 2025-12-03 05:15:36,956 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140492568155968)>', '<ExcThread(monitor, started 140491895056128)>']
[2025-12-03 00:15:44] 2025-12-03 05:15:39,132 | INFO     | PID=2960563 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-03 00:15:44] 2025-12-03 05:15:39,132 | INFO     | .. there are 54 such processes running
[2025-12-03 00:15:44] 2025-12-03 05:15:39,133 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 00:15:44] 2025-12-03 05:15:39,133 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 00:15:44] 2025-12-03 05:15:39,133 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 00:15:44] 2025-12-03 05:15:39,133 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 00:15:44] 2025-12-03 05:15:39,133 | INFO     | [monitor] control thread has ended
[2025-12-03 00:15:44] 2025-12-03 05:15:41,982 | INFO     | all workflow threads have been joined
[2025-12-03 00:15:44] 2025-12-03 05:15:41,982 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 00:15:44] 2025-12-03 05:15:41,982 | INFO     | traces error code: 0
[2025-12-03 00:15:44] 2025-12-03 05:15:41,982 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 00:15:44] 2025-12-03 05:15:43,262 [wrapper] ==== pilot stdout END ====
[2025-12-03 00:15:44] 2025-12-03 05:15:43,331 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 00:15:44] 2025-12-03 05:15:43,342 [wrapper] pilotpid: 2960563
[2025-12-03 00:15:44] 2025-12-03 05:15:43,353 [wrapper] Pilot exit status: 0
[2025-12-03 00:15:44] 2025-12-03 05:15:43,440 [wrapper] pandaids: 6897987113
[2025-12-03 00:15:44] 2025-12-03 05:15:43,738 [wrapper] cleanup supervisor_pilot 3632090 2960564
[2025-12-03 00:15:44] 2025-12-03 05:15:43,754 [wrapper] Test setup, not cleaning
[2025-12-03 00:15:44] 2025-12-03 05:15:43,778 [wrapper] apfmon messages muted
[2025-12-03 00:15:44] 2025-12-03 05:15:43,805 [wrapper] ==== wrapper stdout END ====
[2025-12-03 00:15:44] 2025-12-03 05:15:43,824 [wrapper] ==== wrapper stderr END ====
[2025-12-03 00:15:44]  *** Error codes and diagnostics ***
[2025-12-03 00:15:44]     "exeErrorCode": 0,
[2025-12-03 00:15:44]     "exeErrorDiag": "",
[2025-12-03 00:15:44]     "pilotErrorCode": 0,
[2025-12-03 00:15:44]     "pilotErrorDiag": "",
[2025-12-03 00:15:44]  *** Listing of results directory ***
[2025-12-03 00:15:44] total 1055244
[2025-12-03 00:15:44] -rw-r--r--. 1 boincer umatlas    576529 Nov 28 17:41 pilot3.tar.gz
[2025-12-03 00:15:44] -rw-r--r--. 1 boincer umatlas      5112 Nov 28 17:43 queuedata.json
[2025-12-03 00:15:44] -rwx------. 1 boincer umatlas     36292 Nov 28 17:44 runpilot2-wrapper.sh
[2025-12-03 00:15:44] -rw-r--r--. 1 boincer umatlas       100 Dec  2 14:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 00:15:44] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  2 14:39 run_atlas
[2025-12-03 00:15:44] -rw-r--r--. 1 boincer umatlas       105 Dec  2 14:39 job.xml
[2025-12-03 00:15:44] -rw-r--r--. 2 boincer umatlas 377363167 Dec  2 14:39 EVNT.47528880._000093.pool.root.1
[2025-12-03 00:15:44] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 14:39 start_atlas.sh
[2025-12-03 00:15:44] drwxrwx--x. 2 boincer umatlas      4096 Dec  2 14:39 shared
[2025-12-03 00:15:44] -rw-r--r--. 2 boincer umatlas    590131 Dec  2 14:39 input.tar.gz
[2025-12-03 00:15:44] -rw-r--r--. 1 boincer umatlas         0 Dec  2 14:39 boinc_lockfile
[2025-12-03 00:15:44] -rw-r--r--. 1 boincer umatlas      2880 Dec  2 14:39 pandaJob.out
[2025-12-03 00:15:44] -rw-------. 1 boincer umatlas        57 Dec  2 14:39 setup.sh.local
[2025-12-03 00:15:44] -rw-------. 1 boincer umatlas    989224 Dec  2 14:40 agis_schedconf.cvmfs.json
[2025-12-03 00:15:44] drwx------. 5 boincer umatlas      4096 Dec  2 14:40 pilot3
[2025-12-03 00:15:44] -rw-r--r--. 1 boincer umatlas       533 Dec  2 23:51 boinc_task_state.xml
[2025-12-03 00:15:44] -rw-r--r--. 1 boincer umatlas      7173 Dec  3 00:12 init_data.xml
[2025-12-03 00:15:44] -rw-------. 1 boincer umatlas 687209598 Dec  3 00:13 HITS.47538121._000927.pool.root.1
[2025-12-03 00:15:44] -rw-------. 1 boincer umatlas      1071 Dec  3 00:14 memory_monitor_summary.json
[2025-12-03 00:15:44] -rw-------. 1 boincer umatlas   1516240 Dec  3 00:14 agis_ddmendpoints.agis.ALL.json
[2025-12-03 00:15:44] -rw-------. 1 boincer umatlas   1883285 Dec  3 00:14 log.47538121._000927.job.log.tgz.1
[2025-12-03 00:15:44] -rw-------. 1 boincer umatlas     27118 Dec  3 00:15 heartbeat.json
[2025-12-03 00:15:44] -rw-------. 1 boincer umatlas        95 Dec  3 00:15 pilot_heartbeat.json
[2025-12-03 00:15:44] -rw-r--r--. 1 boincer umatlas      8192 Dec  3 00:15 boinc_mmap_file
[2025-12-03 00:15:44] -rw-r--r--. 1 boincer umatlas        29 Dec  3 00:15 wrapper_checkpoint.txt
[2025-12-03 00:15:44] -rw-------. 1 boincer umatlas      5011 Dec  3 00:15 pilotlog.txt
[2025-12-03 00:15:44] -rw-------. 1 boincer umatlas   4139521 Dec  3 00:15 log.47538121._000927.job.log.1
[2025-12-03 00:15:44] -rw-------. 1 boincer umatlas       353 Dec  3 00:15 output.list
[2025-12-03 00:15:44] -rw-r--r--. 1 boincer umatlas       620 Dec  3 00:15 runtime_log
[2025-12-03 00:15:44] -rw-------. 1 boincer umatlas   6062080 Dec  3 00:15 result.tar.gz
[2025-12-03 00:15:44] -rw-r--r--. 1 boincer umatlas      9333 Dec  3 00:15 runtime_log.err
[2025-12-03 00:15:44] -rw-------. 1 boincer umatlas       664 Dec  3 00:15 IPZNDmRNMj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmCZLKDmd3RwSo.diag
[2025-12-03 00:15:44] -rw-r--r--. 1 boincer umatlas     21874 Dec  3 00:15 stderr.txt
[2025-12-03 00:15:44] HITS file was successfully produced:
[2025-12-03 00:15:44] -rw-------. 1 boincer umatlas 687209598 Dec  3 00:13 shared/HITS.pool.root.1
[2025-12-03 00:15:44]  *** Contents of shared directory: ***
[2025-12-03 00:15:44] total 1046148
[2025-12-03 00:15:44] -rw-r--r--. 2 boincer umatlas 377363167 Dec  2 14:39 ATLAS.root_0
[2025-12-03 00:15:44] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 14:39 start_atlas.sh
[2025-12-03 00:15:44] -rw-r--r--. 2 boincer umatlas    590131 Dec  2 14:39 input.tar.gz
[2025-12-03 00:15:44] -rw-------. 1 boincer umatlas 687209598 Dec  3 00:13 HITS.pool.root.1
[2025-12-03 00:15:44] -rw-------. 1 boincer umatlas   6062080 Dec  3 00:15 result.tar.gz
00:15:46 (2943226): run_atlas exited; CPU time 117162.091320
00:15:46 (2943226): called boinc_finish(0)

</stderr_txt>
]]>

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