Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:36:09 (1858398): wrapper (7.7.26015): starting
23:36:09 (1858398): wrapper: running run_atlas (--nthreads 12)
[2025-12-02 23:36:09] Arguments: --nthreads 12
[2025-12-02 23:36:09] Threads: 12
[2025-12-02 23:36:09] Checking for CVMFS
[2025-12-02 23:36:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 23:36:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 23:36:09] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 23:36:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 23:36:09] 2.13.3.0 9777 16305 110028 153571 3 68 3555928 4097025 1037 130560 0 12410653 99.930 1366503 1727 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://188.184.28.244:3128 1
[2025-12-02 23:36:09] CVMFS is ok
[2025-12-02 23:36:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 23:36:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 23:36:09] Further information can be found at the LHC@home message board.
[2025-12-02 23:36:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 23:36:09] Checking for apptainer binary...
[2025-12-02 23:36:09] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin)
[2025-12-02 23:36:09] apptainer is not installed, using version from CVMFS
[2025-12-02 23:36:09] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 23:36:09] pckelar6.cern.ch
[2025-12-02 23:36:09] apptainer works
[2025-12-02 23:36:09] Set ATHENA_PROC_NUMBER=12
[2025-12-02 23:36:09] Set ATHENA_CORE_NUMBER=12
[2025-12-02 23:36:09] Starting ATLAS job with PandaID=6895323868
[2025-12-02 23:36:09] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 11:36:38]  *** The last 200 lines of the pilot log: ***
[2025-12-03 11:36:38] 2025-12-03 10:35:48,297 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 11:36:38] 2025-12-03 10:35:49,809 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-03 11:36:38] 2025-12-03 10:35:49,815 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2799.889041666667
[2025-12-03 11:36:38] 2025-12-03 10:35:49,821 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6895323868/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 11:36:38] 2025-12-03 10:35:49,822 | INFO     | extracted standard info from prmon json
[2025-12-03 11:36:38] 2025-12-03 10:35:49,822 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 11:36:38] 2025-12-03 10:35:49,822 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 11:36:38] 2025-12-03 10:35:49,841 | INFO     | fitting pss+swap vs Time
[2025-12-03 11:36:38] 2025-12-03 10:35:49,843 | INFO     | sum of square deviations: 109580948403.7215
[2025-12-03 11:36:38] 2025-12-03 10:35:49,859 | INFO     | sum of deviations: 1578163213322.3152
[2025-12-03 11:36:38] 2025-12-03 10:35:49,859 | INFO     | mean x: 1764736544.980198
[2025-12-03 11:36:38] 2025-12-03 10:35:49,860 | INFO     | mean y: 3632932.451202263
[2025-12-03 11:36:38] 2025-12-03 10:35:49,860 | INFO     | intersect: -25411754843.100174
[2025-12-03 11:36:38] 2025-12-03 10:35:49,861 | INFO     | chi2: 5.4745311949174456
[2025-12-03 11:36:38] 2025-12-03 10:35:49,862 | INFO     | sum of square deviations: 107272642061.38469
[2025-12-03 11:36:38] 2025-12-03 10:35:49,868 | INFO     | time since job start (43169s) is within the limit (172800.0s)
[2025-12-03 11:36:38] 2025-12-03 10:35:49,879 | INFO     | sum of deviations: 1829717810253.3342
[2025-12-03 11:36:38] 2025-12-03 10:35:49,879 | INFO     | mean x: 1764736392.4871795
[2025-12-03 11:36:38] 2025-12-03 10:35:49,879 | INFO     | mean y: 3649536.4814814813
[2025-12-03 11:36:38] 2025-12-03 10:35:49,880 | INFO     | intersect: -30096938513.622623
[2025-12-03 11:36:38] 2025-12-03 10:35:49,881 | INFO     | chi2: 3.0336399263227345
[2025-12-03 11:36:38] 2025-12-03 10:35:49,881 | INFO     | current chi2=3.0336399263227345 (change=44.58630669345413 %)
[2025-12-03 11:36:38] 2025-12-03 10:35:49,882 | INFO     | sum of square deviations: 104996901973.94821
[2025-12-03 11:36:38] 2025-12-03 10:35:49,898 | INFO     | sum of deviations: 1877998330213.0874
[2025-12-03 11:36:38] 2025-12-03 10:35:49,898 | INFO     | mean x: 1764736239.9913917
[2025-12-03 11:36:38] 2025-12-03 10:35:49,899 | INFO     | mean y: 3652756.681492109
[2025-12-03 11:36:38] 2025-12-03 10:35:49,899 | INFO     | intersect: -31560818667.367447
[2025-12-03 11:36:38] 2025-12-03 10:35:49,900 | INFO     | chi2: 2.7258290041505444
[2025-12-03 11:36:38] 2025-12-03 10:35:49,900 | INFO     | current chi2=2.7258290041505444 (change=10.146587256494447 %)
[2025-12-03 11:36:38] 2025-12-03 10:35:49,900 | INFO     | right removable region: 696
[2025-12-03 11:36:38] 2025-12-03 10:35:49,901 | INFO     | sum of square deviations: 107272262215.35707
[2025-12-03 11:36:38] 2025-12-03 10:35:49,917 | INFO     | sum of deviations: 1321487912268.3096
[2025-12-03 11:36:38] 2025-12-03 10:35:49,918 | INFO     | mean x: 1764736697.485755
[2025-12-03 11:36:38] 2025-12-03 10:35:49,918 | INFO     | mean y: 3649861.1809116807
[2025-12-03 11:36:38] 2025-12-03 10:35:49,918 | INFO     | intersect: -21736156551.980213
[2025-12-03 11:36:38] 2025-12-03 10:35:49,919 | INFO     | chi2: 3.13159897965045
[2025-12-03 11:36:38] 2025-12-03 10:35:49,919 | INFO     | current chi2=3.13159897965045 (change=42.7969470233757 %)
[2025-12-03 11:36:38] 2025-12-03 10:35:49,920 | INFO     | sum of square deviations: 104996399337.85648
[2025-12-03 11:36:38] 2025-12-03 10:35:49,936 | INFO     | sum of deviations: 1241405065838.4844
[2025-12-03 11:36:38] 2025-12-03 10:35:49,937 | INFO     | mean x: 1764736849.9856527
[2025-12-03 11:36:38] 2025-12-03 10:35:49,937 | INFO     | mean y: 3655225.948350072
[2025-12-03 11:36:38] 2025-12-03 10:35:49,937 | INFO     | intersect: -20861377091.918594
[2025-12-03 11:36:38] 2025-12-03 10:35:49,938 | INFO     | chi2: 3.037627854245226
[2025-12-03 11:36:38] 2025-12-03 10:35:49,938 | INFO     | current chi2=3.037627854245226 (change=3.0007394310657514 %)
[2025-12-03 11:36:38] 2025-12-03 10:35:49,938 | INFO     | left removable region: 20
[2025-12-03 11:36:38] 2025-12-03 10:35:49,940 | INFO     | sum of square deviations: 95789448508.99866
[2025-12-03 11:36:38] 2025-12-03 10:35:49,955 | INFO     | sum of deviations: 1434022682849.826
[2025-12-03 11:36:38] 2025-12-03 10:35:49,955 | INFO     | mean x: 1764736819.4985206
[2025-12-03 11:36:38] 2025-12-03 10:35:49,955 | INFO     | mean y: 3683083.326923077
[2025-12-03 11:36:38] 2025-12-03 10:35:49,955 | INFO     | intersect: -26415433717.240112
[2025-12-03 11:36:38] 2025-12-03 10:35:49,956 | INFO     | chi2: 0.234330130501588
[2025-12-03 11:36:38] 2025-12-03 10:35:49,957 | INFO     | current memory leak: 14.97 B/s (using 676 data points, chi2=0.23)
[2025-12-03 11:36:38] 2025-12-03 10:35:49,957 | INFO     | could have reported an average CPU frequency of 2802 MHz (27 samples)
[2025-12-03 11:36:38] 2025-12-03 10:35:49,958 | INFO     | ..............................
[2025-12-03 11:36:38] 2025-12-03 10:35:49,958 | INFO     | . Timing measurements:
[2025-12-03 11:36:38] 2025-12-03 10:35:49,958 | INFO     | . get job = 0 s
[2025-12-03 11:36:38] 2025-12-03 10:35:49,958 | INFO     | . initial setup = 1 s
[2025-12-03 11:36:38] 2025-12-03 10:35:49,958 | INFO     | . payload setup = 8 s
[2025-12-03 11:36:38] 2025-12-03 10:35:49,959 | INFO     | . stage-in = 0 s
[2025-12-03 11:36:38] 2025-12-03 10:35:49,959 | INFO     | . payload execution = 43129 s
[2025-12-03 11:36:38] 2025-12-03 10:35:49,959 | INFO     | . stage-out = 2 s
[2025-12-03 11:36:38] 2025-12-03 10:35:49,959 | INFO     | . log creation = 0 s
[2025-12-03 11:36:38] 2025-12-03 10:35:49,959 | INFO     | ..............................
[2025-12-03 11:36:38] 2025-12-03 10:35:50,168 | INFO     | 
[2025-12-03 11:36:38] 2025-12-03 10:35:50,169 | INFO     | job summary report
[2025-12-03 11:36:38] 2025-12-03 10:35:50,169 | INFO     | --------------------------------------------------
[2025-12-03 11:36:38] 2025-12-03 10:35:50,169 | INFO     | PanDA job id: 6895323868
[2025-12-03 11:36:38] 2025-12-03 10:35:50,169 | INFO     | task id: 47556149
[2025-12-03 11:36:38] 2025-12-03 10:35:50,169 | INFO     | errors: (none)
[2025-12-03 11:36:38] 2025-12-03 10:35:50,170 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 11:36:38] 2025-12-03 10:35:50,170 | INFO     | pilot state: finished 
[2025-12-03 11:36:38] 2025-12-03 10:35:50,170 | INFO     | transexitcode: 0
[2025-12-03 11:36:38] 2025-12-03 10:35:50,170 | INFO     | exeerrorcode: 0
[2025-12-03 11:36:38] 2025-12-03 10:35:50,170 | INFO     | exeerrordiag: 
[2025-12-03 11:36:38] 2025-12-03 10:35:50,170 | INFO     | exitcode: 0
[2025-12-03 11:36:38] 2025-12-03 10:35:50,171 | INFO     | exitmsg: OK
[2025-12-03 11:36:38] 2025-12-03 10:35:50,171 | INFO     | cpuconsumptiontime: 500517 s
[2025-12-03 11:36:38] 2025-12-03 10:35:50,171 | INFO     | nevents: 1000
[2025-12-03 11:36:38] 2025-12-03 10:35:50,171 | INFO     | neventsw: 0
[2025-12-03 11:36:38] 2025-12-03 10:35:50,171 | INFO     | pid: 1869773
[2025-12-03 11:36:38] 2025-12-03 10:35:50,171 | INFO     | pgrp: 1869773
[2025-12-03 11:36:38] 2025-12-03 10:35:50,171 | INFO     | corecount: 12
[2025-12-03 11:36:38] 2025-12-03 10:35:50,172 | INFO     | event service: False
[2025-12-03 11:36:38] 2025-12-03 10:35:50,172 | INFO     | sizes: {0: 2284084, 1: 2284339, 2: 2284339, 6: 2284629, 12: 2284657, 43141: 2328785, 43144: 2337779, 43146: 2337863, 43153: 2338109}
[2025-12-03 11:36:38] 2025-12-03 10:35:50,172 | INFO     | --------------------------------------------------
[2025-12-03 11:36:38] 2025-12-03 10:35:50,172 | INFO     | 
[2025-12-03 11:36:38] 2025-12-03 10:35:50,172 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-12-03 11:36:38] 2025-12-03 10:35:50,193 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 11:36:38] 2025-12-03 10:35:50,194 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 11:36:38] 2025-12-03 10:35:50,194 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 11:36:38] 2025-12-03 10:35:50,194 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 11:36:38] 2025-12-03 10:35:50,194 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 11:36:38] 2025-12-03 10:35:50,194 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 11:36:38] 2025-12-03 10:35:50,195 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 11:36:38] 2025-12-03 10:35:50,195 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 11:36:38] 2025-12-03 10:35:50,195 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 11:36:38] 2025-12-03 10:35:50,195 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 11:36:38] 2025-12-03 10:35:50,195 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 11:36:38] 2025-12-03 10:35:50,195 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 11:36:38] 2025-12-03 10:35:50,196 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 11:36:38] 2025-12-03 10:35:50,196 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 11:36:38] 2025-12-03 10:35:50,196 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 11:36:38] 2025-12-03 10:35:50,196 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 11:36:38] 2025-12-03 10:35:50,196 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 11:36:38] 2025-12-03 10:35:50,196 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 11:36:38] 2025-12-03 10:35:50,197 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 11:36:38] 2025-12-03 10:35:50,197 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 11:36:38] 2025-12-03 10:35:50,197 | INFO     | job 6895323868 has completed (purged errors)
[2025-12-03 11:36:38] 2025-12-03 10:35:50,197 | INFO     | overall cleanup function is called
[2025-12-03 11:36:38] 2025-12-03 10:35:51,219 | INFO     | --- collectZombieJob: --- 10, [1869773]
[2025-12-03 11:36:38] 2025-12-03 10:35:51,220 | INFO     | zombie collector waiting for pid 1869773
[2025-12-03 11:36:38] 2025-12-03 10:35:51,220 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 11:36:38] 2025-12-03 10:35:51,220 | INFO     | collected zombie processes
[2025-12-03 11:36:38] 2025-12-03 10:35:51,220 | INFO     | will attempt to kill all subprocesses of pid=1869773
[2025-12-03 11:36:38] 2025-12-03 10:35:51,411 | INFO     | process IDs to be killed: [1869773] (in reverse order)
[2025-12-03 11:36:38] 2025-12-03 10:35:51,472 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 11:36:38] 2025-12-03 10:35:51,473 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 11:36:38] 2025-12-03 10:35:51,480 | INFO     | did not find any defunct processes belonging to 1869773
[2025-12-03 11:36:38] 2025-12-03 10:35:51,486 | INFO     | did not find any defunct processes belonging to 1869773
[2025-12-03 11:36:38] 2025-12-03 10:35:51,488 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 11:36:38] 2025-12-03 10:35:51,488 | INFO     | ready for new job
[2025-12-03 11:36:38] 2025-12-03 10:35:51,488 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 11:36:38] 2025-12-03 10:35:51,491 | INFO     | ***************************************
[2025-12-03 11:36:38] 2025-12-03 10:35:51,491 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 11:36:38] 2025-12-03 10:35:51,491 | INFO     | ***************************************
[2025-12-03 11:36:38] 2025-12-03 10:35:51,491 | INFO     | 
[2025-12-03 11:36:38] 2025-12-03 10:35:51,493 | INFO     | architecture information:
[2025-12-03 11:36:38] 2025-12-03 10:35:51,493 | INFO     | executing command: cat /etc/os-release
[2025-12-03 11:36:38] 2025-12-03 10:35:51,506 | INFO     | cat /etc/os-release:
[2025-12-03 11:36:38] NAME="CentOS Linux"
[2025-12-03 11:36:38] VERSION="7 (Core)"
[2025-12-03 11:36:38] ID="centos"
[2025-12-03 11:36:38] ID_LIKE="rhel fedora"
[2025-12-03 11:36:38] VERSION_ID="7"
[2025-12-03 11:36:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 11:36:38] ANSI_COLOR="0;31"
[2025-12-03 11:36:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 11:36:38] HOME_URL="https://www.centos.org/"
[2025-12-03 11:36:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 11:36:38] 
[2025-12-03 11:36:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 11:36:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 11:36:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 11:36:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 11:36:38] 
[2025-12-03 11:36:38] 2025-12-03 10:35:51,506 | INFO     | ***************************************
[2025-12-03 11:36:38] 2025-12-03 10:35:52,009 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-12-03 11:36:38] 2025-12-03 10:35:52,028 | INFO     | sufficient remaining disk space (865472610304 B)
[2025-12-03 11:36:38] 2025-12-03 10:35:52,028 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 11:36:38] 2025-12-03 10:35:52,028 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 11:36:38] 2025-12-03 10:35:52,028 | INFO     | update_server=False
[2025-12-03 11:36:38] 2025-12-03 10:35:52,029 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 11:36:38] 2025-12-03 10:35:52,029 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 11:36:38] 2025-12-03 10:35:52,029 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 11:36:38] 2025-12-03 10:35:52,030 | INFO     | all data control threads have been joined
[2025-12-03 11:36:38] 2025-12-03 10:35:52,030 | INFO     | aborting loop
[2025-12-03 11:36:38] 2025-12-03 10:35:52,219 | INFO     | all payload control threads have been joined
[2025-12-03 11:36:38] 2025-12-03 10:35:52,276 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 11:36:38] 2025-12-03 10:35:52,914 | INFO     | all job control threads have been joined
[2025-12-03 11:36:38] 2025-12-03 10:35:53,034 | INFO     | [job] retrieve thread has finished
[2025-12-03 11:36:38] 2025-12-03 10:35:53,035 | INFO     | [job] queue monitor thread has finished
[2025-12-03 11:36:38] 2025-12-03 10:35:53,035 | INFO     | [data] control thread has finished
[2025-12-03 11:36:38] 2025-12-03 10:35:53,036 | INFO     | [job] job monitor thread has finished
[2025-12-03 11:36:38] 2025-12-03 10:35:53,224 | INFO     | [payload] control thread has finished
[2025-12-03 11:36:38] 2025-12-03 10:35:53,367 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 11:36:38] 2025-12-03 10:35:53,823 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 11:36:38] 2025-12-03 10:35:53,879 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 11:36:38] 2025-12-03 10:35:53,919 | INFO     | [job] control thread has finished
[2025-12-03 11:36:38] 2025-12-03 10:35:53,963 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 11:36:38] 2025-12-03 10:35:54,052 | INFO     | [payload] validate_post thread has finished
[2025-12-03 11:36:38] 2025-12-03 10:35:54,099 | INFO     | [data] copytool_in thread has finished
[2025-12-03 11:36:38] 2025-12-03 10:35:54,159 | INFO     | [payload] failed_post thread has finished
[2025-12-03 11:36:38] 2025-12-03 10:35:54,244 | INFO     | [job] validate thread has finished
[2025-12-03 11:36:38] 2025-12-03 10:35:54,282 | INFO     | [data] copytool_out thread has finished
[2025-12-03 11:36:38] 2025-12-03 10:35:54,483 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 11:36:38] 2025-12-03 10:35:57,969 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 11:36:38] 2025-12-03 10:36:23,199 | INFO     | PID=1862242 has CPU usage=7.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-03 11:36:38] 2025-12-03 10:36:23,200 | INFO     | .. there are 2 such processes running
[2025-12-03 11:36:38] 2025-12-03 10:36:23,201 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 11:36:38] 2025-12-03 10:36:23,201 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 11:36:38] 2025-12-03 10:36:23,201 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 11:36:38] 2025-12-03 10:36:29,246 [wrapper] supervise_pilot (15 min periods counter: 49)
[2025-12-03 11:36:38] 2025-12-03 10:36:32,456 | INFO     | [monitor] cgroup control has ended
[2025-12-03 11:36:38] 2025-12-03 10:36:33,721 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140569487296320)>', '<ExcThread(monitor, started 140568927639296)>']
[2025-12-03 11:36:38] 2025-12-03 10:36:34,256 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 11:36:38] 2025-12-03 10:36:34,256 | INFO     | [monitor] control thread has ended
[2025-12-03 11:36:38] 2025-12-03 10:36:38,746 | INFO     | all workflow threads have been joined
[2025-12-03 11:36:38] 2025-12-03 10:36:38,747 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 11:36:38] 2025-12-03 10:36:38,747 | INFO     | traces error code: 0
[2025-12-03 11:36:38] 2025-12-03 10:36:38,747 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 11:36:38] 2025-12-03 10:36:38,854 [wrapper] ==== pilot stdout END ====
[2025-12-03 11:36:38] 2025-12-03 10:36:38,857 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 11:36:38] 2025-12-03 10:36:38,860 [wrapper] pilotpid: 1862242
[2025-12-03 11:36:38] 2025-12-03 10:36:38,862 [wrapper] Pilot exit status: 0
[2025-12-03 11:36:38] 2025-12-03 10:36:38,873 [wrapper] pandaids: 6895323868
[2025-12-03 11:36:38] 2025-12-03 10:36:38,912 [wrapper] cleanup supervisor_pilot 2130765 1862243
[2025-12-03 11:36:38] 2025-12-03 10:36:38,915 [wrapper] Test setup, not cleaning
[2025-12-03 11:36:38] 2025-12-03 10:36:38,918 [wrapper] apfmon messages muted
[2025-12-03 11:36:38] 2025-12-03 10:36:38,921 [wrapper] ==== wrapper stdout END ====
[2025-12-03 11:36:38] 2025-12-03 10:36:38,923 [wrapper] ==== wrapper stderr END ====
[2025-12-03 11:36:38]  *** Error codes and diagnostics ***
[2025-12-03 11:36:38]     "exeErrorCode": 0,
[2025-12-03 11:36:38]     "exeErrorDiag": "",
[2025-12-03 11:36:38]     "pilotErrorCode": 0,
[2025-12-03 11:36:38]     "pilotErrorDiag": "",
[2025-12-03 11:36:38]  *** Listing of results directory ***
[2025-12-03 11:36:39] total 1320756
[2025-12-03 11:36:39] -rw-r--r--. 1 boinc boinc    576529 Nov 21 14:51 pilot3.tar.gz
[2025-12-03 11:36:39] -rw-r--r--. 1 boinc boinc      5112 Nov 21 15:10 queuedata.json
[2025-12-03 11:36:39] -rwx------. 1 boinc boinc     36292 Nov 21 15:11 runpilot2-wrapper.sh
[2025-12-03 11:36:39] -rw-r--r--. 1 boinc boinc       100 Dec  2 23:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 11:36:39] -rwxr-xr-x. 1 boinc boinc      7986 Dec  2 23:36 run_atlas
[2025-12-03 11:36:39] -rw-r--r--. 1 boinc boinc       105 Dec  2 23:36 job.xml
[2025-12-03 11:36:39] -rw-r--r--. 2 boinc boinc 410265224 Dec  2 23:36 EVNT.47483658._001016.pool.root.1
[2025-12-03 11:36:39] -rw-r--r--. 1 boinc boinc      6293 Dec  2 23:36 init_data.xml
[2025-12-03 11:36:39] -rw-r--r--. 2 boinc boinc     15847 Dec  2 23:36 start_atlas.sh
[2025-12-03 11:36:39] drwxrwx--x. 2 boinc boinc        68 Dec  2 23:36 shared
[2025-12-03 11:36:39] -rw-r--r--. 2 boinc boinc    590101 Dec  2 23:36 input.tar.gz
[2025-12-03 11:36:39] -rw-r--r--. 1 boinc boinc         0 Dec  2 23:36 boinc_lockfile
[2025-12-03 11:36:39] -rw-r--r--. 1 boinc boinc      2784 Dec  2 23:36 pandaJob.out
[2025-12-03 11:36:39] -rw-------. 1 boinc boinc    989292 Dec  2 23:36 agis_schedconf.cvmfs.json
[2025-12-03 11:36:39] drwx------. 5 boinc boinc      4096 Dec  2 23:36 pilot3
[2025-12-03 11:36:39] -rw-r--r--. 1 boinc boinc       533 Dec  3 11:24 boinc_task_state.xml
[2025-12-03 11:36:39] -rw-------. 1 boinc boinc 921547920 Dec  3 11:34 HITS.47556149._000029.pool.root.1
[2025-12-03 11:36:39] -rw-------. 1 boinc boinc      1036 Dec  3 11:35 memory_monitor_summary.json
[2025-12-03 11:36:39] -rw-------. 1 boinc boinc   1516240 Dec  3 11:35 agis_ddmendpoints.agis.ALL.json
[2025-12-03 11:36:39] -rw-------. 1 boinc boinc   2398334 Dec  3 11:35 log.47556149._000029.job.log.tgz.1
[2025-12-03 11:36:39] -rw-------. 1 boinc boinc      8623 Dec  3 11:35 heartbeat.json
[2025-12-03 11:36:39] -rw-r--r--. 1 boinc boinc      8192 Dec  3 11:36 boinc_mmap_file
[2025-12-03 11:36:39] -rw-r--r--. 1 boinc boinc        29 Dec  3 11:36 wrapper_checkpoint.txt
[2025-12-03 11:36:39] -rw-------. 1 boinc boinc        95 Dec  3 11:36 pilot_heartbeat.json
[2025-12-03 11:36:39] -rw-------. 1 boinc boinc      4824 Dec  3 11:36 pilotlog.txt
[2025-12-03 11:36:39] -rw-------. 1 boinc boinc   5968522 Dec  3 11:36 log.47556149._000029.job.log.1
[2025-12-03 11:36:39] -rw-------. 1 boinc boinc       353 Dec  3 11:36 output.list
[2025-12-03 11:36:39] -rw-r--r--. 1 boinc boinc       620 Dec  3 11:36 runtime_log
[2025-12-03 11:36:39] -rw-------. 1 boinc boinc   8386560 Dec  3 11:36 result.tar.gz
[2025-12-03 11:36:39] -rw-r--r--. 1 boinc boinc      8842 Dec  3 11:36 runtime_log.err
[2025-12-03 11:36:39] -rw-------. 1 boinc boinc       665 Dec  3 11:36 hmgNDmS2gg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmgeHKDmr7A0an.diag
[2025-12-03 11:36:39] -rw-r--r--. 1 boinc boinc     21435 Dec  3 11:36 stderr.txt
[2025-12-03 11:36:39] HITS file was successfully produced:
[2025-12-03 11:36:39] -rw-------. 1 boinc boinc 921547920 Dec  3 11:34 shared/HITS.pool.root.1
[2025-12-03 11:36:39]  *** Contents of shared directory: ***
[2025-12-03 11:36:39] total 1309392
[2025-12-03 11:36:39] -rw-r--r--. 2 boinc boinc 410265224 Dec  2 23:36 ATLAS.root_0
[2025-12-03 11:36:39] -rw-r--r--. 2 boinc boinc     15847 Dec  2 23:36 start_atlas.sh
[2025-12-03 11:36:39] -rw-r--r--. 2 boinc boinc    590101 Dec  2 23:36 input.tar.gz
[2025-12-03 11:36:39] -rw-------. 1 boinc boinc 921547920 Dec  3 11:34 HITS.pool.root.1
[2025-12-03 11:36:39] -rw-------. 1 boinc boinc   8386560 Dec  3 11:36 result.tar.gz
11:36:40 (1858398): run_atlas exited; CPU time 500805.707068
11:36:40 (1858398): called boinc_finish(0)

</stderr_txt>
]]>

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